BAC Information

Click to search

BAC

Clone NameB6Ng01-301A23
Chromosome16 (Build37)
Map Location 79,622,361 - 79,762,082
singlet/doubletdoublet
Overlap genenone
Upstream gene4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik, LOC621365
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-301A23.bB6Ng01-301A23.g
ACCGA095473GA095474
length1,1031,079
definitionB6Ng01-301A23.b B6Ng01-301A23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,760,980 - 79,762,082)(79,622,361 - 79,623,219)
sequence
gaattctttttttttcttttttcatattgaaaagaagaatgtgttattcc
ttacattttcattttgtcttgtctggacttgtggtactgagcatttactt
catgtggatttagtctgatcatcaccaagttgggtcaagcatagctacag
tgcttgggcaacaattgaggctgctggatgttagataagaattcacatag
atcatgtagttatttgcatgctaaatcgaattacagaagcatctgaattt
ctgtttataacatttcaaagggtgctccctacaaattctaacaatataat
cacaataaaatttattttaaccaataagaaaagacaggtaatggttaata
taaatatcaactattcaatatccattcaaattattatgtagaaaaaggta
atacagaatacatctggtgaacaaaaagaaatgaaaccttagaaaattaa
acctttagtaaatctaaatgcaaccttgccaaatgtctcattacacttcc
gtgttctgagctatgtatgttagccaccggccttattagagaggttttcc
tacctcccgtgtcccctctggtactgtctgctctgtgatatgaaagactt
tagttcactctctgaatctcttcctgatccaggggcccagcatggtattt
gtttcaactctgttctacctatatttcacacagaaaaagattaaagtttc
attaaatatatatcaaaattttgaagcattataagacattgtaagagaca
aaacagttacttgaatctctgaagattattatggaaaggccaaatcaata
ctgaaatagattccaaaacccttggtataggagaaagtgacctaaaaata
gagtgaaataaataaaaatgaagtgtgatagacttccgtaacattacctt
ctacataaaaagactttaagtcaaggcttatccacctataagttagaagg
aatgggagtacaccgctatataccacctgaatatgagtttcagagataaa
ctaaaatcctctgaggagttcatccacagaaatcaaagtagttgaatggc
ctacacgaaatgaagtaatggtatagtgagagaacctctctcaaatatca
cca
gaattctttggatattatccttctgtaggaataatgaagatattttccca
atctgtaggctgcagttttgtccccttgacagtgacctttgccttaaaga
agcttttccatttcatgaggtcccatttatcaatttttatcttagggcct
ggtccactggtgttctgttcaggaaagttgagaattgttctttcaaggta
tataaaaaaaattgtgttggaatttttatagggattgcattaaatctgta
aatgacttctggtaagatgaccattctcactatgttaatcctacaaattc
ctgagcatggtagatcgttctatcttctgatacctccttcaatttccttc
ttcagggtcttgtagttcttgtcactcagatctttgacttgattagtcat
agttacacctagataatttgaaggacattgtttccttaatttctttctca
gcctgaacatcatttctaaaatggagggataatgatttatttaagttaat
tttatatccaggcattttataaaagattgaatttgtttatcagccgtagg
aggtctctattagaattttgaggattgcttatatattttgaccatgcata
gtaatacctctattttttcctttccaaattgtattccattgatctccttt
tgttgtttcattgctctggctagaacttcaagaagtacattgaataaaga
gggaaagcaacatattcagacgtaaaatcgtccctttcaactatgatatt
ttcttaaaactttttcttgttataaaaaaaatcagctatttaatctgtac
tacttatgatcctgtttctactatatgcattattttatgtaaatacacat
ttcatagtgatttccaagcacaataaacagacctgtatagttaatatcat
ggctatcctgtgctctaacctggattcaaaccatgaagctattgtagtgg
aggagactttgacttttattagaggaaaggtagcattgtgttactactcc
tctaatctcaagtatattcacttacacaaacactaacaatgcccttacac
acaattaataatataataattatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_79760980_79762082
seq2: B6Ng01-301A23.b_45_1147 (reverse)

seq1  TGGTGATATTTGAGAAAGTTTCTCTCACTATACATTTACTTTCATTTC-T  49
      ||||||||||||||| || ||||||||||||||  |||| |||||||| |
seq2  TGGTGATATTTGAGAGAGGTTCTCTCACTATACCATTAC-TTCATTTCGT  49

seq1  GTA-GCCATTC-ACTACTTTGATTTCTGT-GATGAACTTCCTCAGA-GAT  95
      ||| ||||||| ||||||||||||||||| ||||||| |||||||| |||
seq2  GTAGGCCATTCAACTACTTTGATTTCTGTGGATGAAC-TCCTCAGAGGAT  98

seq1  TTTAGTTTTAATCTCTGAAACTTCATATTCA-GTGGTATATAGCCGTGTA  144
      ||||||||  ||||||||||| ||||||||| |||||||||||| |||||
seq2  TTTAGTTT--ATCTCTGAAAC-TCATATTCAGGTGGTATATAGCGGTGTA  145

seq1  CTTCCCATTCCCTTCTAACTTATAGGT-GATAAGCCTTGACTTAAAGTC-  192
      | ||||||| ||||||||||||||||| ||||||||||||||||||||| 
seq2  C-TCCCATT-CCTTCTAACTTATAGGTGGATAAGCCTTGACTTAAAGTCT  193

seq1  TTTTATGTAGAAGGTAATGTTACGGAAGTCTATCACACTTCATTTTTATT  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGTAGAAGGTAATGTTACGGAAGTCTATCACACTTCATTTTTATT  243

seq1  TATTTCACCTCTATTTTTAGGTCACTTTCTCCTATACCAAGGGTTTTGGA  292
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCA-CTCTATTTTTAGGTCACTTTCTCCTATACCAAGGGTTTTGGA  292

seq1  ATCTATTTCAGTATTGATTTGGCCTTTCCATAATAATCTTCAGAGATTCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTCAGTATTGATTTGGCCTTTCCATAATAATCTTCAGAGATTCA  342

seq1  AGTAACTGTTTTGTCTCTTACAATGTCTTATAATGCTTCAAAATTTTGAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTGTTTTGTCTCTTACAATGTCTTATAATGCTTCAAAATTTTGAT  392

seq1  ATATATTTAATGAAACTTTAATCTTTTTCTGTGTGAAATATAGGTAGAAC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTAATGAAACTTTAATCTTTTTCTGTGTGAAATATAGGTAGAAC  442

seq1  AGAGTTGAAACAAATACCATGCTGGGCCCCTGGATCAGGAAGAGATTCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAAACAAATACCATGCTGGGCCCCTGGATCAGGAAGAGATTCAG  492

seq1  AGAGTGAACTAAAGTCTTTCATATCACAGAGCAGACAGTACCAGAGGGGA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAACTAAAGTCTTTCATATCACAGAGCAGACAGTACCAGAGGGGA  542

seq1  CACGGGAGGTAGGAAAACCTCTCTAATAAGGCCGGTGGCTAACATACATA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGGAGGTAGGAAAACCTCTCTAATAAGGCCGGTGGCTAACATACATA  592

seq1  GCTCAGAACACGGAAGTGTAATGAGACATTTGGCAAGGTTGCATTTAGAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAACACGGAAGTGTAATGAGACATTTGGCAAGGTTGCATTTAGAT  642

seq1  TTACTAAAGGTTTAATTTTCTAAGGTTTCATTTCTTTTTGTTCACCAGAT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAAAGGTTTAATTTTCTAAGGTTTCATTTCTTTTTGTTCACCAGAT  692

seq1  GTATTCTGTATTACCTTTTTCTACATAATAATTTGAATGGATATTGAATA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTGTATTACCTTTTTCTACATAATAATTTGAATGGATATTGAATA  742

seq1  GTTGATATTTATATTAACCATTACCTGTCTTTTCTTATTGGTTAAAATAA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATATTTATATTAACCATTACCTGTCTTTTCTTATTGGTTAAAATAA  792

seq1  ATTTTATTGTGATTATATTGTTAGAATTTGTAGGGAGCACCCTTTGAAAT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGTGATTATATTGTTAGAATTTGTAGGGAGCACCCTTTGAAAT  842

seq1  GTTATAAACAGAAATTCAGATGCTTCTGTAATTCGATTTAGCATGCAAAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAACAGAAATTCAGATGCTTCTGTAATTCGATTTAGCATGCAAAT  892

seq1  AACTACATGATCTATGTGAATTCTTATCTAACATCCAGCAGCCTCAATTG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATGATCTATGTGAATTCTTATCTAACATCCAGCAGCCTCAATTG  942

seq1  TTGCCCAAGCACTGTAGCTATGCTTGACCCAACTTGGTGATGATCAGACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAAGCACTGTAGCTATGCTTGACCCAACTTGGTGATGATCAGACT  992

seq1  AAATCCACATGAAGTAAATGCTCAGTACCACAAGTCCAGACAAGACAAAA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCACATGAAGTAAATGCTCAGTACCACAAGTCCAGACAAGACAAAA  1042

seq1  TGAAAATGTAAGGAATAACACATTCTTCTTTTCAATATGAAAAAAGAAAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATGTAAGGAATAACACATTCTTCTTTTCAATATGAAAAAAGAAAA  1092

seq1  AAAAAGAATTC  1103
      |||||||||||
seq2  AAAAAGAATTC  1103

seq1: chr16_79622361_79623219
seq2: B6Ng01-301A23.g_276_1146

seq1  AAATTGTGTTGGAATTTTTATAGGGATTGCATTAAATCTGTAAATGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTGTTGGAATTTTTATAGGGATTGCATTAAATCTGTAAATGACTT  50

seq1  CTGGTAAGATGACCATTCTCACTATGTTAATCCTACAAATTCCTGAGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAGATGACCATTCTCACTATGTTAATCCTACAAATTCCTGAGCAT  100

seq1  GGTAGATCGTTCTATCTTCTGATACCTCCTTCAATTTCCTTCTTCAGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGATCGTTCTATCTTCTGATACCTCCTTCAATTTCCTTCTTCAGGGT  150

seq1  CTTGTAGTTCTTGTCACTCAGATCTTTGACTTGATTAGTCATAGTTACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAGTTCTTGTCACTCAGATCTTTGACTTGATTAGTCATAGTTACAC  200

seq1  CTAGATAATTTGAAGGACATTGTTTCCTTAATTTCTTTCTCAGCCTGAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATAATTTGAAGGACATTGTTTCCTTAATTTCTTTCTCAGCCTGAAC  250

seq1  ATCATTTCTAAAATGGAGGGATAATGATTTATTTAAGTTAATTTTATATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTAAAATGGAGGGATAATGATTTATTTAAGTTAATTTTATATC  300

seq1  CAGGCATTTTATAAAAGATTGAATTTGTTTATCAGCCGTAGGAGGTCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATTTTATAAAAGATTGAATTTGTTTATCAGCCGTAGGAGGTCTCT  350

seq1  ATTAGAATTTTGAGGATTGCTTATATATTTTGACCATGCATAGTAATACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATTTTGAGGATTGCTTATATATTTTGACCATGCATAGTAATACC  400

seq1  TCTATTTTTTCCTTTCCAAATTGTATTCCATTGATCTCCTTTTGTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTTTCCTTTCCAAATTGTATTCCATTGATCTCCTTTTGTTGTTT  450

seq1  CATTGCTCTGGCTAGAACTTCAAGAAGTACATTGAATAAAGAGGGAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCTGGCTAGAACTTCAAGAAGTACATTGAATAAAGAGGGAAAGC  500

seq1  AACATATTCAGACGTAAAATCGTCCCTTTCAACTATGATATTTTCTTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATTCAGACGTAAAATCGTCCCTTTCAACTATGATATTTTCTTAAA  550

seq1  ACTTTTTCTTGTTATAAAAAAAATCAGCTATTTAATCTGTACTACTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTTGTTATAAAAAAAATCAGCTATTTAATCTGTACTACTTATG  600

seq1  ATCCTGTTTCTACTATATGCATTATTTTATGTAAATACACATTTCATAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTTCTACTATATGCATTATTTTATGTAAATACACATTTCATAGT  650

seq1  GATTTCCAAGCACAATAAACAGACCTGTATAGTT-ATATCATGGCTATCC  699
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GATTTCCAAGCACAATAAACAGACCTGTATAGTTAATATCATGGCTATCC  700

seq1  TGTGCTCTAACCTGGATTCAAACCATGAAGCTA-TGTAGTGGAGGAAGAC  748
      ||||||||||||||||||||||||||||||||| ||||||||||| ||||
seq2  TGTGCTCTAACCTGGATTCAAACCATGAAGCTATTGTAGTGGAGG-AGAC  749

seq1  TTTGAACTTTTAATTAGAGGAAAGGTAGGCATGTGTTACTACT-CTCTAA  797
      |||| |||||| ||||||||||||||||   |||||||||||| ||||||
seq2  TTTG-ACTTTT-ATTAGAGGAAAGGTAGCATTGTGTTACTACTCCTCTAA  797

seq1  TCTCAAAGTATAATTCAC-TACACAAACACTACACCATGCCCCTACACAC  846
      |||| |||||| |||||| ||||||||||||| || |||||| |||||||
seq2  TCTC-AAGTAT-ATTCACTTACACAAACACTA-ACAATGCCCTTACACAC  844

seq1  A--------------AATTATATATAT  859
      |              ||||||||||||
seq2  AATTAATAATATAATAATTATATATAT  871