BAC Information

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BAC

Clone NameB6Ng01-302H17
Chromosome16 (Build37)
Map Location 12,560,360 - 12,701,099
singlet/doubletdoublet
Overlap genenone
Upstream gene4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
Downstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-302H17.bB6Ng01-302H17.g
ACCGA096517GA096518
length1,20792
definitionB6Ng01-302H17.b B6Ng01-302H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,699,926 - 12,701,099)(12,560,360 - 12,560,451)
sequence
gaattcaagtatccagatatgggcttgctggatggaaaagtgattgttgc
tgtcaccctcctcagcttatattcttgcagccttttatgtgtgtgtctac
ttccttgagacagggtctctcacaaagctggaagctcccattctcaacta
ggctagctggacagttaattatgatccttctgcctctgagggtggagtta
cacagtcatgccagcttcctataagggtgctggggatttgaactcaggtc
ctcaaacttgcacagcagatgctcttacctacttagccacctccctggcc
ctttttccagtctcctttactttgcagaattgaaattgtttaataggttt
tttcttttttacccatttcaatgtatcaaaaatcacttgtaccttttttt
gagaaatacatttattaatgattacagattattacgattcatttaacagt
ttcttacttttggtaaatatttggattgcttctgactcgtacaatttaga
gaaactcaaatgtggaaagcaggctagagaataggaatgcttctttactg
gcacagacctgaattgtctattgtcgcttcatacctatggcgtgtttcaa
atatctagtgccatgcacaccgtggatctgtaacagttgagggaagcagt
gaatgaatgaagggaagcatgcagtcctatcatccgacagggtgctgacg
catggccatacaataagcgctcgcagaatgaatgaatgcactccaaaggg
tacattaaaacacacttagccatggctcggctgttccaggaggctggttc
taaaacatgatgtacctcttcccggtgcaagaagccaagctctattgcct
acaaatacttcacaaagtgaggggctaacggcataatttgctctcagtaa
ggtttcagggaaattaattgttccatttcttaaagacccttttctgtgca
ataattaaaggaaaaaaccgtccgccatagcaattatctgtaattactaa
tgaaaacaggtggtctcaatgggcttttccaaattgagaacatggaatgg
ttcattatcggtcacaggcaactggcggattatcccaattttcaatggag
aatgcctggagagatccaaacatggaggtgaacgatggattcagggaaac
acaagaagggagatatcttggctcaattagagggagcttgggcagagagg
gggcagg

atcagctttctttacttgatatggttggagtaaaagtgggtgcctcacaa
cagaaaggctaggaaggggaattgggaagggaggagaggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_12699926_12701099
seq2: B6Ng01-302H17.b_46_1252 (reverse)

seq1  CCTGCC----CTCTGCCC-AGCTCCCTCTAA-TGAGC--AG-TATCTCCC  41
      ||||||    |||||||| |||||||||||| |||||  || ||||||||
seq2  CCTGCCCCCTCTCTGCCCAAGCTCCCTCTAATTGAGCCAAGATATCTCCC  50

seq1  T--CTGTGTTTCCCTGA--TCATCCTTCACCT-CATGTTT-GATCTCAGC  85
      |   |||||||||||||   |||| ||||||| ||||||| ||||||  |
seq2  TTCTTGTGTTTCCCTGAATCCATCGTTCACCTCCATGTTTGGATCTCTCC  100

seq1  A-----TCT-CATTGAAAATT-GGATA--TCGGCAGTTGCCTGTGA-CGA  125
      |     ||| ||||||||||| |||||   || ||||||||||||| |||
seq2  AGGCATTCTCCATTGAAAATTGGGATAATCCGCCAGTTGCCTGTGACCGA  150

seq1  TAATGAACCATT-CATG-TCTCAATTT-GAAAAGCCATTTGAGA-CACCT  171
      |||||||||||| |||| ||||||||| ||||||||  |||||| |||||
seq2  TAATGAACCATTCCATGTTCTCAATTTGGAAAAGCCCATTGAGACCACCT  200

seq1  GTTTTCATTAGTAATTACAGATAATTGCTATGGCGGACGGTTTTTT-CTT  220
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTTTCATTAGTAATTACAGATAATTGCTATGGCGGACGGTTTTTTCCTT  250

seq1  TAATTATTGCACAGAAAA-GGTCTTTAAGAAATGGAACAATTAATTT-CC  268
      |||||||||||||||||| |||||||||||||||||||||||||||| ||
seq2  TAATTATTGCACAGAAAAGGGTCTTTAAGAAATGGAACAATTAATTTCCC  300

seq1  TGAAACCTTACTGAGAGCAAATTATGCCGTTAG-CCCTCACTTTGTGAAG  317
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGAAACCTTACTGAGAGCAAATTATGCCGTTAGCCCCTCACTTTGTGAAG  350

seq1  TATTTGTAGGCAATAGAGCTTGGCTTCTTGCACCGGGAAGAGGTACATCA  367
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTAGGCAATAGAGCTTGGCTTCTTGCACCGGGAAGAGGTACATCA  400

seq1  TGTTTTAGAACCAGCCTCCTGGAACAGCCGAGCCATGGCTAAGTGTGTTT  417
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGAACCAGCCTCCTGGAACAGCCGAGCCATGGCTAAGTGTGTTT  450

seq1  TAATGTACCCTTTGGAGTGCATTCATTCATTCTGCGAGCGCTTATTGTAT  467
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTACCCTTTGGAGTGCATTCATTCATTCTGCGAGCGCTTATTGTAT  500

seq1  GGCCATGCGTCAGCACCCTGTCGGATGATAGGACTGCATGCTTCCCTTCA  517
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATGCGTCAGCACCCTGTCGGATGATAGGACTGCATGCTTCCCTTCA  550

seq1  TTCATTCACTGCTTCCCTCAACTGTTACAGATCCACGGTGTGCATGGCAC  567
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCACTGCTTCCCTCAACTGTTACAGATCCACGGTGTGCATGGCAC  600

seq1  TAGATATTTGAAACACGCCATAGGTATGAAGCGACAATAGACAATTCAGG  617
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATATTTGAAACACGCCATAGGTATGAAGCGACAATAGACAATTCAGG  650

seq1  TCTGTGCCAGTAAAGAAGCATTCCTATTCTCTAGCCTGCTTTCCACATTT  667
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCAGTAAAGAAGCATTCCTATTCTCTAGCCTGCTTTCCACATTT  700

seq1  GAGTTTCTCTAAATTGTACGAGTCAGAAGCAATCCAAATATTTACCAAAA  717
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTCTAAATTGTACGAGTCAGAAGCAATCCAAATATTTACCAAAA  750

seq1  GTAAGAAACTGTTAAATGAATCGTAATAATCTGTAATCATTAATAAATGT  767
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAAACTGTTAAATGAATCGTAATAATCTGTAATCATTAATAAATGT  800

seq1  ATTTCTCAAAAAAAGGTACAAGTGATTTTTGATACATTGAAATGGGTAAA  817
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCAAAAAAAGGTACAAGTGATTTTTGATACATTGAAATGGGTAAA  850

seq1  AAAGAAAAAACCTATTAAACAATTTCAATTCTGCAAAGTAAAGGAGACTG  867
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAAACCTATTAAACAATTTCAATTCTGCAAAGTAAAGGAGACTG  900

seq1  GAAAAAGGGCCAGGGAGGTGGCTAAGTAGGTAAGAGCATCTGCTGTGCAA  917
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGGCCAGGGAGGTGGCTAAGTAGGTAAGAGCATCTGCTGTGCAA  950

seq1  GTTTGAGGACCTGAGTTCAAATCCCCAGCACCCTTATAGGAAGCTGGCAT  967
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGAGGACCTGAGTTCAAATCCCCAGCACCCTTATAGGAAGCTGGCAT  1000

seq1  GACTGTGTAACTCCACCCTCAGAGGCAGAAGGATCATAATTAACTGTCCA  1017
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTGTAACTCCACCCTCAGAGGCAGAAGGATCATAATTAACTGTCCA  1050

seq1  GCTAGCCTAGTTGAGAATGGGAGCTTCCAGCTTTGTGAGAGACCCTGTCT  1067
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCTAGTTGAGAATGGGAGCTTCCAGCTTTGTGAGAGACCCTGTCT  1100

seq1  CAAGGAAGTAGACACACACATAAAAGGCTGCAAGAATATAAGCTGAGGAG  1117
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGTAGACACACACATAAAAGGCTGCAAGAATATAAGCTGAGGAG  1150

seq1  GGTGACAGCAACAATCACTTTTCCATCCAGCAAGCCCATATCTGGATACT  1167
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACAGCAACAATCACTTTTCCATCCAGCAAGCCCATATCTGGATACT  1200

seq1  TGAATTC  1174
      |||||||
seq2  TGAATTC  1207


seq1: chr16_12560360_12560451
seq2: B6Ng01-302H17.g_73_164

seq1  ATCAGCTTTCTTTACTTGATATGGTTGGAGTAAAAGTGGGTGCCTCACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTTTCTTTACTTGATATGGTTGGAGTAAAAGTGGGTGCCTCACAA  50

seq1  CAGAAAGGCTAGGAAGGGGAATTGGGAAGGGAGGAGAGGGGG  92
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGCTAGGAAGGGGAATTGGGAAGGGAGGAGAGGGGG  92


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