BAC Information

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BAC

Clone NameB6Ng01-305C05
Chromosome16 (Build37)
Map Location 87,576,950 - 87,684,042
singlet/doubletdoublet
Overlap geneORF63
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486
Downstream geneBach1, LOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-305C05.bB6Ng01-305C05.g
ACCGA098505GA098506
length540880
definitionB6Ng01-305C05.b B6Ng01-305C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,683,497 - 87,684,042)(87,576,950 - 87,577,829)
sequence
agtgataggggattctacaagtgccaggtatgtctcctttcattccccag
ggaagaaagtcacgcaggtggggctagtttcctgcctcttcataactaga
attacgcaagatttaggagacaaatgtgccagccaggaaaggatgaggcg
aatcactctagccaattttaaaagtcaaggaggcgctgtagaattatcta
gatctttacttctgcccaagatggcatggcaggaataagacttcctgctc
taccacaaccaggcaaacactttaaaaaaggagtgcaaatttatcatgga
gtcctttacatcttggagtctagggacatgggacaatgttcccccaaaga
ggaaatccacaagggatatatacatcttgtgagcatgcgctctctattgc
acagacagaattcccaggcagaaccaaggggttgagctgaagtagttaga
gctaatgatctaggaaaaccaagatagctggaattcacttaatacaaaat
aagggagcagggaaatgggaggggcgggggaagggggatg
gaattcagtacggagcctgggatacttttgaactgtttgttggttttctc
tctctgtccttcaaggactggggttccaggtgtgcatcatacctggaaga
agctgatacttttattccccaaagttactgttttccctctagctgtacta
ggaatccttgtaaattatactttagctgagcatgtattaaacaggcttgc
aaaccagttaaatcatagatgactggctttaagcctactggtggtttgtt
ttgttttgttttgttttaattttacacatgtatttgtttattttgttttg
ttttgttttaagccccagcaagttttcactaagacttttcctggtctact
tttccgtgctgctgtgcttctaatgataggagaatcacctggatcagcga
cagccagtgtgctcatgatgtagtagctccatgtgctgtgttcattcaat
actctcgctgctgtagtggtggccacaagctttggccaacacaacggtca
tattctatttcagagttcctcaaagctgggcagtcggcaaggacgagtga
tcccctctcctccaagtgctcatcttcagagtcatgaattttccagtttt
tataacaagttagagcttggaattgatcaactccaaagactttttaattc
cccacccctggccccccagacaccatattcctgccttggtgtgcaagcaa
gagctggtagctttgttttaaaactataaatcatgtttggatgttaggga
catatgttcttttaatttagtgagcactgctggtcacagcgactctagga
aggccagagtgaacggcccatcagagagagagagaggagagaggaaagag
agagaggagagagaggagagagagggagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87683497_87684042
seq2: B6Ng01-305C05.b_47_592 (reverse)

seq1  CATCCCCCTTCCCCCGCCCCTCCCATTTCCCTGCTCCCTTATTTTGTATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCTTCCCCCGCCCCTCCCATTTCCCTGCTCCCTTATTTTGTATT  50

seq1  AAGTGAATTCCAGCTATCTTGGTTTTCCTAGATCATTAGCTCTAACTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAATTCCAGCTATCTTGGTTTTCCTAGATCATTAGCTCTAACTACT  100

seq1  TCAGCTCAACCCCTTGGTTCTGCCTGGGAATTCTGTCTGTGCAATAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCAACCCCTTGGTTCTGCCTGGGAATTCTGTCTGTGCAATAGAGA  150

seq1  GCGCATGCTCACAAGATGTATATATCCCTTGTGGATTTCCTCTTTGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCATGCTCACAAGATGTATATATCCCTTGTGGATTTCCTCTTTGGGGG  200

seq1  AACATTGTCCCATGTCCCTAGACTCCAAGATGTAAAGGACTCCATGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGTCCCATGTCCCTAGACTCCAAGATGTAAAGGACTCCATGATAA  250

seq1  ATTTGCACTCCTTTTTTAAAGTGTTTGCCTGGTTGCGGTAGAGCAGGAAG  300
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATTTGCACTCCTTTTTTAAAGTGTTTGCCTGGTTGTGGTAGAGCAGGAAG  300

seq1  TCTTATTCCTGCCATGCCATCTTGGGCAGAAGTAAAGATCTAGATAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTCCTGCCATGCCATCTTGGGCAGAAGTAAAGATCTAGATAATTC  350

seq1  TACAGCGCCTCCTTGACTTTTAAAATTGGCTAGAGTGATTCGCCTCATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCGCCTCCTTGACTTTTAAAATTGGCTAGAGTGATTCGCCTCATCC  400

seq1  TTTCCTGGCTGGCACATTTGTCTCCTAAATCTTGCGTAATTCTAGTTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGCTGGCACATTTGTCTCCTAAATCTTGCGTAATTCTAGTTATG  450

seq1  AAGAGGCAGGAAACTAGCCCCACCTGCGTGACTTTCTTCCCTGGGGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCAGGAAACTAGCCCCACCTGCGTGACTTTCTTCCCTGGGGAATG  500

seq1  AAAGGAGACATACCTGGCACTTGTAGAATCCCCTATCACTGAATTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAGACATACCTGGCACTTGTAGAATCCCCTATCACTGAATTC  546

seq1: chr16_87576950_87577829
seq2: B6Ng01-305C05.g_70_949

seq1  GAATTCAGTACGGAGCCTGGGATACTTTTGAACTGTTTGTTGGTTTTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACGGAGCCTGGGATACTTTTGAACTGTTTGTTGGTTTTCTC  50

seq1  TCTCTGTCCTTCAAGGACTGGGGTTCCAGGTGTGCATCATACCTGGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCCTTCAAGGACTGGGGTTCCAGGTGTGCATCATACCTGGAAGA  100

seq1  AGCTGATACTTTTATTCCCCAAAGTTACTGTTTTCCCTCTAGCTGTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGATACTTTTATTCCCCAAAGTTACTGTTTTCCCTCTAGCTGTACTA  150

seq1  GGAATCCTTGTAAATTATACTTTAGCTGAGCATGTATTAAACAGGCTTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCTTGTAAATTATACTTTAGCTGAGCATGTATTAAACAGGCTTGC  200

seq1  AAACCAGTTAAATCATAGATGACTGGCTTTAAGCCTACTGGTGGTTTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAGTTAAATCATAGATGACTGGCTTTAAGCCTACTGGTGGTTTGTT  250

seq1  TTGTTTTGTTTTGTTTTAATTTTACACATGTATTTGTTTATTTTGTTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTAATTTTACACATGTATTTGTTTATTTTGTTTTG  300

seq1  TTTTGTTTTAAGCCCCAGCAAGTTTTCACTAAGACTTTTCCTGGTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTAAGCCCCAGCAAGTTTTCACTAAGACTTTTCCTGGTCTACT  350

seq1  TTTCCGTGCTGCTGTGCTTCTAATGATAGGAGAATCACCTGGATCAGCGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCGTGCTGCTGTGCTTCTAATGATAGGAGAATCACCTGGATCAGCGA  400

seq1  CAGCCAGTGTGCTCATGATGTAGTAGCTCCATGTGCTGTGTTCATTCAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGTGTGCTCATGATGTAGTAGCTCCATGTGCTGTGTTCATTCAAT  450

seq1  ACTCTCGCTGCTGTAGTGGTGGCCACAAGCTTTGGCCAACACAACGGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCGCTGCTGTAGTGGTGGCCACAAGCTTTGGCCAACACAACGGTCA  500

seq1  TATTCTATTTCAGAGTTCCTCAAAGCTGGGCAGTCGGCAAGGACGAGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTATTTCAGAGTTCCTCAAAGCTGGGCAGTCGGCAAGGACGAGTGA  550

seq1  TCCCCTCTCCTCCAAGTGCTCATCTTCAGAGTCATGAATTTTCCAGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTCCTCCAAGTGCTCATCTTCAGAGTCATGAATTTTCCAGTTTT  600

seq1  TATAACAAGTTAGAGCTTGGAATTGATCAACTCCAAAGACTTTTTAATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAAGTTAGAGCTTGGAATTGATCAACTCCAAAGACTTTTTAATTC  650

seq1  CCCACCCCTGGCCCCCCAGACACCATATTCCTGCCTTGGTGTGCAAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCCCTGGCCCCCCAGACACCATATTCCTGCCTTGGTGTGCAAGCAA  700

seq1  GAGCTGGTAGCTTTGTTTTAAAACTATAAATCATGTTTGGATGTTAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGTAGCTTTGTTTTAAAACTATAAATCATGTTTGGATGTTAGGGA  750

seq1  CATATGTTCTTTTAATTTAGTGAGCACTGCTGGTCACAGCGACTCTAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTCTTTTAATTTAGTGAGCACTGCTGGTCACAGCGACTCTAGGA  800

seq1  AGGCCAGAGTGAACGG-CCATCAGAGAGAGAGAGAGGAGAGAGGAAAGAG  849
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGCCAGAGTGAACGGCCCATCAGAGAGAGAGAGAGGAGAGAGGAAAGAG  850

seq1  AGAGAGGAGAGAGAGGAGAGAGAGGAGAGAG  880
      ||||||||||||||||||||||||| |||||
seq2  AGAGAGGAGAGAGAGGAGAGAGAGG-GAGAG  880