BAC Information

Click to search

BAC

Clone NameB6Ng01-310K23
Chromosome16 (Build37)
Map Location 72,763,222 - 72,914,212
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310K23.bB6Ng01-310K23.g
ACCGA102597GA102598
length1,138570
definitionB6Ng01-310K23.b B6Ng01-310K23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,913,075 - 72,914,212)(72,763,222 - 72,763,795)
sequence
gaattcatttgatagatataagaattaaaaagaaacttatgcagaataaa
taacttccataggctcatgagtgtaaatattgaattctgggatttataat
ttggtcttatgatgcccacacatgtgttttactcttttgatgttttccta
ttataaaatttgaaaactaagaaattagattagacacaaatttatttata
attgatttgtataatactatcacatatattgattttactcgtgcttaagt
cacgagtaaaatttatttttgaaggaacaatgcacatagtgtgcattaac
tacatgtaagatggacaggaagacatctatttgtggcttgccaccctagc
ttcctttgacctttctgttagagcactacctatttattttacaggaactc
aaatttaacttctcagggaagtggggctctacatcctcagctgtggtaca
tccaaggatttcctctagaagagaaggggacaggaagcaatggacattga
acaatgaaggaactaaagaacagaggagaaaactgactgaaggaagggag
gagcagatggctcaggaaggagacatatgggaattggaggagaggaagcc
attggcaaggagtggcgggatgccaagtctgcgaaggatctagaggacac
tggggatttggatgggatgtgagtcagctgctttttacccaaatatcaca
ccaacacggaaaaaatcaaagaaaccctcaaagacgtacaggatgcagaa
cggggctggaaaaagttatgacatgcctcatcccagcaattctgcctcat
taacatggggtgggaagtgctaaagaagtgtttgaatgaataaccaaatg
tgttcatggctgcattattgatactttcaaatcttaatttcgcttgtgga
agaaataaaacagatagaccttctatttatctttagtcaattttcctaat
ctgtggtgctgattctgttaatgagtaaaaccattcccttcaaccactag
gattcagttattttcttagattggataggtttccaaggggaggatttcac
ggctacatattcaggaagagttcagagccaattcgtgcttgatggctcgt
catcctctataaggtaaatcaatacaaaaccgataaat

tcagctgcgtttgacagatgaatgtgctgagttaaactctcagaattgag
tttgtggggacttttgggagaccctgatgatgtgcctgaacctacatgac
atcatttgattacacatgctagagtgattactacctcgtatagtaattgc
ataactgagcacctgttagcatacagcatgggcagaaatggccattgtac
agataaagagtcatagttatgaacctcagtgggagagaatatgcgcagcc
ctgctgggactagatgtagtccccaagggggacttccccttctctgagga
gaggggaggaggtaccaggggggggatgacttgcaagggtgggagatgaa
ggatcagagggagggggtgctctgatctggatgcagagtgaataaataaa
taattgagagagagagagagaaagaaaaaaagaaggcagtcattgattcc
cttagaatttttgattttatttttgttgttgttgttgttgttgtttggaa
tctgtacgaacttaattcttgaaagtcagggtgtggtttttattaaacca
taagtgcaaagggaaagaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72913075_72914212
seq2: B6Ng01-310K23.b_46_1183 (reverse)

seq1  ATTTATGGGTTTTTGTAATGATTTACCTTATAGATGATGACGAGCCATC-  49
      |||||| || ||||||| |||||||||||||||| |||||||||||||| 
seq2  ATTTATCGG-TTTTGTATTGATTTACCTTATAGAGGATGACGAGCCATCA  49

seq1  AGCACG-ATTTGCTCTGGACTC-TCCTG-ATATGTAGCCGTGGAAATCCT  96
      |||||| ||| |||||| |||| ||||| |||||||||||| ||||||||
seq2  AGCACGAATTGGCTCTGAACTCTTCCTGAATATGTAGCCGT-GAAATCCT  98

seq1  CCCCTTGGAAACCTATCCAATCTAAGAAAATAACTGAATCCTAGTTGGTT  146
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCCCTTGGAAACCTATCCAATCTAAGAAAATAACTGAATCCTAG-TGGTT  147

seq1  GAAGGGAATGGTTTTACTCATTAACAGAATCAGCACCACAGATTAGGAAA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAATGGTTTTACTCATTAACAGAATCAGCACCACAGATTAGGAAA  197

seq1  ATTGACTAAAGATAAATAGAAGGTCTTATCTGTTTTATTTCTTCCACAAG  246
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATTGACTAAAGATAAATAGAAGGTC-TATCTGTTTTATTTCTTCCACAAG  246

seq1  CGAAATTAAGATTTGAAAGTATCAATAATGCAGCCATGAACACATTTGGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAATTAAGATTTGAAAGTATCAATAATGCAGCCATGAACACATTTGGT  296

seq1  TATTCATTCAAACACTTCTTTAGCACTTCCCACCCCATGTTAATGAGGCA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCAAACACTTCTTTAGCACTTCCCACCCCATGTTAATGAGGCA  346

seq1  GAATTGCTGGGATGAGGCATGTCATAACTTTTTCCAGCCCCGTTCTGCAT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTGGGATGAGGCATGTCATAACTTTTTCCAGCCCCGTTCTGCAT  396

seq1  CCTGTACGTCTTTGAGGGTTTCTTTGATTTTTTCCGTGTTGGTGTGATAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTACGTCTTTGAGGGTTTCTTTGATTTTTTCCGTGTTGGTGTGATAT  446

seq1  TTGGGTAAAAAGCAGCTGACTCACATCCCATCCAAATCCCCAGTGTCCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTAAAAAGCAGCTGACTCACATCCCATCCAAATCCCCAGTGTCCTC  496

seq1  TAGATCCTTCGCAGACTTGGCATCCCGCCACTCCTTGCCAATGGCTTCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCTTCGCAGACTTGGCATCCCGCCACTCCTTGCCAATGGCTTCCT  546

seq1  CTCCTCCAATTCCCATATGTCTCCTTCCTGAGCCATCTGCTCCTCCCTTC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCAATTCCCATATGTCTCCTTCCTGAGCCATCTGCTCCTCCCTTC  596

seq1  CTTCAGTCAGTTTTCTCCTCTGTTCTTTAGTTCCTTCATTGTTCAATGTC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGTCAGTTTTCTCCTCTGTTCTTTAGTTCCTTCATTGTTCAATGTC  646

seq1  CATTGCTTCCTGTCCCCTTCTCTTCTAGAGGAAATCCTTGGATGTACCAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTTCCTGTCCCCTTCTCTTCTAGAGGAAATCCTTGGATGTACCAC  696

seq1  AGCTGAGGATGTAGAGCCCCACTTCCCTGAGAAGTTAAATTTGAGTTCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAGGATGTAGAGCCCCACTTCCCTGAGAAGTTAAATTTGAGTTCCT  746

seq1  GTAAAATAAATAGGTAGTGCTCTAACAGAAAGGTCAAAGGAAGCTAGGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATAAATAGGTAGTGCTCTAACAGAAAGGTCAAAGGAAGCTAGGGT  796

seq1  GGCAAGCCACAAATAGATGTCTTCCTGTCCATCTTACATGTAGTTAATGC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGCCACAAATAGATGTCTTCCTGTCCATCTTACATGTAGTTAATGC  846

seq1  ACACTATGTGCATTGTTCCTTCAAAAATAAATTTTACTCGTGACTTAAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTATGTGCATTGTTCCTTCAAAAATAAATTTTACTCGTGACTTAAGC  896

seq1  ACGAGTAAAATCAATATATGTGATAGTATTATACAAATCAATTATAAATA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTAAAATCAATATATGTGATAGTATTATACAAATCAATTATAAATA  946

seq1  AATTTGTGTCTAATCTAATTTCTTAGTTTTCAAATTTTATAATAGGAAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGTCTAATCTAATTTCTTAGTTTTCAAATTTTATAATAGGAAAA  996

seq1  CATCAAAAGAGTAAAACACATGTGTGGGCATCATAAGACCAAATTATAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAAAGAGTAAAACACATGTGTGGGCATCATAAGACCAAATTATAAA  1046

seq1  TCCCAGAATTCAATATTTACACTCATGAGCCTATGGAAGTTATTTATTCT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAATTCAATATTTACACTCATGAGCCTATGGAAGTTATTTATTCT  1096

seq1  GCATAAGTTTCTTTTTAATTCTTATATCTATCAAATGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAGTTTCTTTTTAATTCTTATATCTATCAAATGAATTC  1138


seq1: chr16_72763222_72763795
seq2: B6Ng01-310K23.g_63_638

seq1  GAATTCTCAGCTGCGTTTGACAGATGAATGTGCTGAGTTAAACTCTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTGCGTTTGACAGATGAATGTGCTGAGTTAAACTCTCAGA  50

seq1  ATTGAGTTTGTGGGGACTTTTGGGAGACCCTGATGATGTGCCTGAACCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTTTGTGGGGACTTTTGGGAGACCCTGATGATGTGCCTGAACCTA  100

seq1  CATGACATCATTTGATTACACATGCTAGAGTGATTACTACCTCGTATAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACATCATTTGATTACACATGCTAGAGTGATTACTACCTCGTATAGT  150

seq1  AATTGCATAACTGAGCACCTGTTAGCATACAGCATGGGCAGAAATGGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCATAACTGAGCACCTGTTAGCATACAGCATGGGCAGAAATGGCCA  200

seq1  TTGTACAGATAAAGAGTCATAGTTATGAACCTCAGTGGGAGAGAATATGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACAGATAAAGAGTCATAGTTATGAACCTCAGTGGGAGAGAATATGC  250

seq1  GCAGCCCTGCTGGGACTAGATGTAGTCCCCAAGGGGGACTTCCCCTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCCCTGCTGGGACTAGATGTAGTCCCCAAGGGGGACTTCCCCTTCTC  300

seq1  TGAGGAGAGGGGAGGAGGTACCAGGGGGGGGATGACTTGCAAGGGTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAGAGGGGAGGAGGTACCAGGGGGGGGATGACTTGCAAGGGTGGGA  350

seq1  GATGAAGGATCAGAGGGAGGGGGTGCTCTGATCTGGATGCAGAGTGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAAGGATCAGAGGGAGGGGGTGCTCTGATCTGGATGCAGAGTGAATA  400

seq1  AATAAATAATTGAGAGAGAGAGAGAGAAAGAAAAAAAGAAGGCAGTCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAATTGAGAGAGAGAGAGAGAAAGAAAAAAAGAAGGCAGTCATT  450

seq1  GATTCCCTTAGAATTTTTGATTTTATTTTTGTTGTTGTTGTTGTTGTTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCCTTAGAATTTTTGATTTTATTTTTGTTGTTGTTGTTGTTGTTGT  500

seq1  TTGGAAGCTGTACAAACTTAATTCTTGAAAGTCAGGGTGTGG-CTTTATT  549
      |||||| |||||| ||||||||||||||||||||||||||||  ||||||
seq2  TTGGAATCTGTACGAACTTAATTCTTGAAAGTCAGGGTGTGGTTTTTATT  550

seq1  ATAACATAAGTGCAAA-GGAAAGAAG  574
      | | |||||||||||| |||||||||
seq2  AAACCATAAGTGCAAAGGGAAAGAAG  576


| Home | SequenceCutter | Blast | Download |