BAC Information

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BAC

Clone NameB6Ng01-310M09
Chromosome16 (Build37)
Map Location 21,442,812 - 21,583,066
singlet/doubletdoublet
Overlap geneVps8
Upstream geneEif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274, EG625060, LOC625123, LOC676915, 2310042E22Rik, Ephb3, 6430590I03Rik
Downstream gene2510009E07Rik, Ehhadh, LOC100043489, LOC546659, Map3k13, LOC624037, Tmem41a, Liph, Senp2, EG239760, Igf2bp2, EG545152, EG666421, Sfrs10, LOC100043507, Etv5, Dgkg, LOC671242
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310M09.bB6Ng01-310M09.g
ACCGA102659GA102660
length1,1891,099
definitionB6Ng01-310M09.b B6Ng01-310M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,581,884 - 21,583,066)(21,442,812 - 21,443,907)
sequence
gaattctcaacagaggaatctctaatggccaagaagcatttttaaacatg
ttcaatatccttagtcatcaggaaaatgcaaatcaaaatgattccatctt
acatccccatcagaaaggccaagatcaaaaattcaagtgatacacatgct
ggcgaggatgtggagtaaggggaacactcctccattgctggtgggagagc
aaactatacaaccattttgaaaatcaagttggcggtttctcagaaagttg
ggaatagttctaccccaagacacagctatatcactactgggcatatactc
aaaagatatcccactatatcataaggacgctttctcaactatgttcatag
cagctttatttatagtagtcagaaaatggaaacaacctagatgtccctca
actgaagaatggataaagaaaatgtggttcctctacacaatgaaacagta
ttcagctatcagaatgtaaagtgaataaataaatgaaaaaaaaacctggg
caaatatgaatattaatgacaaaaaaggaattcctattattggcatatag
atatgctaaattgtgatctagaagagaagcccatgatgaaattgtccctg
gctttggttcagtgctccagagaaaactgataaaacaaagtagtgtaaca
ggcctgagttttctgtcagaaatggaggtcagctgggggctgtgtgatac
cgaggggacagcaagacgcagtaacggtgttcagcagtcaagacacagtt
ctatgaacttctcatttaaccccctccgttgtcacgttgtgttctcctca
aacccacagagcagcagacagcactctgctctgctgcctctttaaaaaat
gctgcaaaataaatatagttgatacattccccatctccatgagcaacgaa
gcttctgaaatgaacactctgcaccatgttctttaaaggaaagaagacat
acgcagagcatgtgagtagcaccttgcctgtcaccagctccaagagtgat
gattcccgtctcttgccatgtgggtgctaatcagtgctgccgtgcgcctc
atcggtcgctgctgtcccgccatcctggagaatgtacctattcttagctt
ctctggctggctgacctgggcctaagcctctcaaggcttgaaacaggttc
actcacttgttcagtacctggaccgagagaaccgactct
gaattcttcatttccttggagcagtttcagaggagactctcagagatgat
taaaagtcaggggaaaaggcttcgaactctaaataacttcagtttgggct
gttttcacgttccagattcttgtgagaacctgaagtgttctttcgtgaga
ggcgtggaggaagcgcagcgtgacccgctttattgaatccacgtgtggct
ggactgctgcccacgtgctcggcgctcctcctcgtagattcctcttgtgt
cagggctgtattcctgaggctgccatcttggacagggatccttgtagggg
tgcccacctcctcattatagcttagtgctttgcgaacagactgatgtctt
tgatggcctgaattccctgtttaaaagccatggtgttctcttctgacctt
ttgatattgtcacaggttctcactttgagaaccatgcaacttaggtgaaa
aaaaggtcacacccacataatctcgtcagggcttgaacagcctcctgatt
ttgtgtgaactgtgttggtggtgctcctgggcaggagttggacgtgactg
gaacttgatagccagaagtcctgggtggtatcagtcctggcaccgttagc
acttggagcctgtctatgcctgtttgtggtcgtttccccacactgtgtcc
tgacatcctcatccatctgggactggacagctctttcctggtagctgtgc
ctcatagcttccaataagcaggatacattctccatttgcatggcattcac
agttctgtgctctcgtctttatgagctgtctatcagctcctgctaggcta
agggatcctagtagggcggcctctgacttctcattcttggatcagcagag
cacacttttactctgaatgggaacaccccattaatgtgtggtaaaagttt
aaggatccctttaggatggcggagggaaaggagccatagcagagcaacag
agcgagtgacagtgtggtgagggcgttgggaaggtgttccaagttgtcaa
cagtttaggggggaggaaggaggactgaggcctgtaagctagtaagtgat
gtgaacctagccagatgggaggacttgcctgtactctgtcaggtgggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_21581884_21583066
seq2: B6Ng01-310M09.b_46_1234 (reverse)

seq1  AGAGTCTGTTCTCTCTGCTCA-GTACTGACAAAGTGATGAAACCTG-TTC  48
      |||||| |||||||| |  || |||||||  ||||||   |||||| |||
seq2  AGAGTCGGTTCTCTCGGTCCAGGTACTGAACAAGTGAGTGAACCTGTTTC  50

seq1  AGCCCTTGAGAAGCTTGGAGCCCAGGTCAG-CAG-CAGAGAAGCTAAG-A  95
      |  |||||||| |||| | ||||||||||| ||| ||||||||||||| |
seq2  AAGCCTTGAGAGGCTTAG-GCCCAGGTCAGCCAGCCAGAGAAGCTAAGAA  99

seq1  TAGGTACATTCTCAGGGATGGCGGGACAGCAGCGACCGATGA-GCGCACG  144
      |||||||||||||  ||||||||||||||||||||||||||| |||||||
seq2  TAGGTACATTCTCCAGGATGGCGGGACAGCAGCGACCGATGAGGCGCACG  149

seq1  GCAGCACTGATTAGCACCCACATGGCAAGAGACGGGAATCATCACTCTTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACTGATTAGCACCCACATGGCAAGAGACGGGAATCATCACTCTTG  199

seq1  GAGCTGGTGACAGGCAAGGTGCTACTCACATGCTCTGCGTATGTCTTCTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGGTGACAGGCAAGGTGCTACTCACATGCTCTGCGTATGTCTTCTT  249

seq1  TCC-TTAAAGAACATGGTGCAGAGTGTTCATTTCAGAAGCTTCGTTGCTC  293
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTAAAGAACATGGTGCAGAGTGTTCATTTCAGAAGCTTCGTTGCTC  299

seq1  ATGGAGATGGGGAATGTATCAACTATATTTATTTTGCAGCATTTTTTAAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATGGGGAATGTATCAACTATATTTATTTTGCAGCATTTTTTAAA  349

seq1  GAGGCAGCAGAGCAGAGTGCTGTCTGCTGCTCTGTGGGTTTGAGGAGAAC  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGCAGAGCAGAGTGCTGTCTGCTGCTCTGTGGGTTTGAGGAGAAC  399

seq1  ACAACGTGACAACGGAGGGGGTTAAATGAGAAGTTCATAGAACTGTGTCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTGACAACGGAGGGGGTTAAATGAGAAGTTCATAGAACTGTGTCT  449

seq1  TGACTGCTGAACACCGTTACTGCGTCTTGCTGTCCCCTCGGTATCACACA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGCTGAACACCGTTACTGCGTCTTGCTGTCCCCTCGGTATCACACA  499

seq1  GCCCCCAGCTGACCTCCATTTCTGACAGAAAACTCAGGCCTGTTACACTA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCCAGCTGACCTCCATTTCTGACAGAAAACTCAGGCCTGTTACACTA  549

seq1  CTTTGTTTTATCAGTTTTCTCTGGAGCACTGAACCAAAGCCAGGGACAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTTATCAGTTTTCTCTGGAGCACTGAACCAAAGCCAGGGACAAT  599

seq1  TTCATCATGGGCTTCTCTTCTAGATCACAATTTAGCATATCTATATGCCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATGGGCTTCTCTTCTAGATCACAATTTAGCATATCTATATGCCA  649

seq1  ATAATAGGAATTCCTTTTTTGTCATTAATATTCATATTTGCCCAGGTTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGGAATTCCTTTTTTGTCATTAATATTCATATTTGCCCAGGTTTT  699

seq1  TTTTTCATTTATTTATTCACTTTACATTCTGATAGCTGAATACTGTTTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATTTATTTATTCACTTTACATTCTGATAGCTGAATACTGTTTCA  749

seq1  TTGTGTAGAGGAACCACATTTTCTTTATCCATTCTTCAGTTGAGGGACAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGAGGAACCACATTTTCTTTATCCATTCTTCAGTTGAGGGACAT  799

seq1  CTAGGTTGTTTCCATTTTCTGACTACTATAAATAAAGCTGCTATGAACAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTGTTTCCATTTTCTGACTACTATAAATAAAGCTGCTATGAACAT  849

seq1  AGTTGAGAAAGCGTCCTTATGATATAGTGGGATATCTTTTGAGTATATGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGAGAAAGCGTCCTTATGATATAGTGGGATATCTTTTGAGTATATGC  899

seq1  CCAGTAGTGATATAGCTGTGTCTTGGGGTAGAACTATTCCCAACTTTCTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAGTGATATAGCTGTGTCTTGGGGTAGAACTATTCCCAACTTTCTG  949

seq1  AGAAACCGCCAACTTGATTTTCAAAATGGTTGTATAGTTTGCTCTCCCAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACCGCCAACTTGATTTTCAAAATGGTTGTATAGTTTGCTCTCCCAC  999

seq1  CAGCAATGGAGGAGTGTTCCCCTTACTCCACATCCTCGCCAGCATGTGTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATGGAGGAGTGTTCCCCTTACTCCACATCCTCGCCAGCATGTGTA  1049

seq1  TCACTTGAATTTTTGATCTTGGCCTTTCTGATGGGGATGTAAGATGGAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTGAATTTTTGATCTTGGCCTTTCTGATGGGGATGTAAGATGGAAT  1099

seq1  CATTTTGATTTGCATTTTCCTGATGACTAAGGATATTGAACATGTTTAAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGATTTGCATTTTCCTGATGACTAAGGATATTGAACATGTTTAAA  1149

seq1  AATGCTTCTTGGCCATTAGAGATTCCTCTGTTGAGAATTC  1183
      ||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTTCTTGGCCATTAGAGATTCCTCTGTTGAGAATTC  1189

seq1: chr16_21442812_21443907
seq2: B6Ng01-310M09.g_65_1163

seq1  GAATTCTTCATTTCCTTGGAGCAGTTTCAGAGGAGACTCTCAGAGATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATTTCCTTGGAGCAGTTTCAGAGGAGACTCTCAGAGATGAT  50

seq1  TAAAAGTCAGGGGAAAAGGCTTCGAACTCTAAATAACTTCAGTTTGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTCAGGGGAAAAGGCTTCGAACTCTAAATAACTTCAGTTTGGGCT  100

seq1  GTTTTCACGTTCCAGATTCTTGTGAGAACCTGAAGTGTTCTTTCGTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCACGTTCCAGATTCTTGTGAGAACCTGAAGTGTTCTTTCGTGAGA  150

seq1  GGCGTGGAGGAAGCGCAGCGTGACCCGCTTTATTGAATCCACGTGTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGGAGGAAGCGCAGCGTGACCCGCTTTATTGAATCCACGTGTGGCT  200

seq1  GGACTGCTGCCCACGTGCTCGGCGCTCCTCCTCGTAGATTCCTCTTGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGCTGCCCACGTGCTCGGCGCTCCTCCTCGTAGATTCCTCTTGTGT  250

seq1  CAGGGCTGTATTCCTGAGGCTGCCATCTTGGACAGGGATCCTTGTAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGTATTCCTGAGGCTGCCATCTTGGACAGGGATCCTTGTAGGGG  300

seq1  TGCCCACCTCCTCATTATAGCTTAGTGCTTTGCGAACAGACTGATGTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACCTCCTCATTATAGCTTAGTGCTTTGCGAACAGACTGATGTCTT  350

seq1  TGATGGCCTGAATTCCCTGTTTAAAAGCCATGGTGTTCTCTTCTGACCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCCTGAATTCCCTGTTTAAAAGCCATGGTGTTCTCTTCTGACCTT  400

seq1  TTGATATTGTCACAGGTTCTCACTTTGAGAACCATGCAACTTAGGTGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTGTCACAGGTTCTCACTTTGAGAACCATGCAACTTAGGTGAAA  450

seq1  AAAAGGTCACACCCACATAATCTCGTCAGGGCTTGAACAGCCTCCTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTCACACCCACATAATCTCGTCAGGGCTTGAACAGCCTCCTGATT  500

seq1  TTGTGTGAACTGTGTTGGTGGTGCTCCTGGGCAGGAGTTGGACGTGACTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGAACTGTGTTGGTGGTGCTCCTGGGCAGGAGTTGGACGTGACTG  550

seq1  GAACTTGATAGCCAGAAGTCCTGGGTGGTATCAGTCCTGGCACCGTTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGATAGCCAGAAGTCCTGGGTGGTATCAGTCCTGGCACCGTTAGC  600

seq1  ACTTGGAGCCTGTCTATGCCTGTTTGTGGTCGTTTCCCCACACTGTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGAGCCTGTCTATGCCTGTTTGTGGTCGTTTCCCCACACTGTGTCC  650

seq1  TGACATCCTCATCCATCTGGGACTGGACAGCTCTTTCCTGGTAGCTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATCCTCATCCATCTGGGACTGGACAGCTCTTTCCTGGTAGCTGTGC  700

seq1  CTCATAGCTTCCAATAAGCAGGATACATTCTCCATTTGCATGGCATTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATAGCTTCCAATAAGCAGGATACATTCTCCATTTGCATGGCATTCAC  750

seq1  AGTTCTGTGCTCTCGTCTTTATGAGCTGTCTATCAGCTCCTGCTAGGCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTGCTCTCGTCTTTATGAGCTGTCTATCAGCTCCTGCTAGGCTA  800

seq1  AGGGATCCTAGTAGGGCGGCCTCTGACTTCTCATTCTTGGATCAGCAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCCTAGTAGGGCGGCCTCTGACTTCTCATTCTTGGATCAGCAGAG  850

seq1  CACACTTTTACTCTGAATGGGAACACCCCATTAATGTGTGGTAAAAGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTTTTACTCTGAATGGGAACACCCCATTAATGTGTGGTAAAAGTTT  900

seq1  AAGGATCCCTTTAGGATGGCGGAGGGAAAGGAGCCATAAGCAGGAGCAAC  950
      ||||||||||||||||||||||||||||||||||||| |||| |||||||
seq2  AAGGATCCCTTTAGGATGGCGGAGGGAAAGGAGCCAT-AGCA-GAGCAAC  948

seq1  AGAGCGAGTGACAAGTGTGGGTGAGGGCGTTGGGAAGGTGTTCCAAGTTG  1000
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  AGAGCGAGTGAC-AGTGT-GGTGAGGGCGTTGGGAAGGTGTTCCAAGTTG  996

seq1  TC-ACAGTT--AGGGGGAGGAAGGAGGACAGAGGCCCTGAGGCAAGCAGG  1047
      || ||||||   ||||||||||||||||| ||||||   | || || | |
seq2  TCAACAGTTTAGGGGGGAGGAAGGAGGACTGAGGCCTGTAAGCTAGTAAG  1046

seq1  TGATGCAGACTCAGCAGCA--GGAGGAC-TGCCTG-ATTCTGTCAGGTGG  1093
      |||||   ||  |||   |  ||||||| |||||| | ||||||||||||
seq2  TGATGTGAACCTAGCCAGATGGGAGGACTTGCCTGTACTCTGTCAGGTGG  1096

seq1  GCA  1096
      |||
seq2  GCA  1099