BAC Information

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BAC

Clone NameB6Ng01-310M13
Chromosome16 (Build37)
Map Location 47,364,712 - 47,440,904
singlet/doubletdoublet
Overlap genenone
Upstream genePvrl3, LOC628757
Downstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310M13.bB6Ng01-310M13.g
ACCGA102667GA102668
length990952
definitionB6Ng01-310M13.b B6Ng01-310M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,364,712 - 47,365,506)(47,440,351 - 47,440,904)
sequence
gaattcagagattttcaatggtcatatccactgctgatctccatgaatca
agcattatttcctcagagaaaactctgctgtgtgataaatcactcacctc
aatttctcctgagttgttgaagcaagagtgtgtgaatatgtgactgcttt
acatctctgctgaccccatatcttcttgaactgttgaacaaattgttgga
gctggtcttcaacaatataggaagaacatccaaatgagttttcaataatt
gaacaatatgtaaaattatgggtttgtttcaactttaaaacagatgaagt
caatggcttttctgtacccaaaggataaacaggctgagaaagaaattagg
gaaactacatctcaatagtcacaaataatataaaataccttggtgtgact
ctaactaaggaagtgaaagttctgtatgataaaaacttgaagtctctgaa
gaaagaaataaaagaagatctcagaagatggaaagatctatgctcatgga
ttgacagaatcaatatagtaaaaatggctatcctgccaaaagcaatctac
agattcaatgcaatacccatcaaaattataactcagttcttcaacgaatt
agaaagggcaatcagcagattcatctggaataacaaaaaacctaggatag
caaaaactcttctcaaggataaaagaacctctggtgaaatcaccatgcct
gacttaaagctgtactacagagcaattgtgattaaaaactgcatgctact
ggtatagtgacagacaagtagaccaatggaatagaattgaagaccgtgag
atgaacccacactcctatggtcacttgatctttgacaagggagctaaaac
catccagtggaaaaaaacagcattttcaacaaatggtgctggcacaactg
gtggttatcatgtagaagaatgagaattgatccattcctatctccttgta
ctaaggtcaatctaagtggattaaggagctcctcataaaa

gaattccacatgtatcctgtgtcaaacaaatgtgtggccttcccagcctt
gagctggccctttccagccttgagcagcctgaacagactttgaacacttg
acacaatggaccttatcagatcttggtggagtcaactacttcggctgcac
ttgccttggtggagtgagtcatctgccttggttgcatgtgcaagttccca
caggaacttagaagattagactgccatgctgaattttctttgcaaaaagg
gacaaaaaaggatgagttcagtggaatttcactatatatacatgcagtgc
tgaatattaaacttagagccttgatcagaaccatgccttggtttcattat
tctcttgatcccttcttctttatcattcccaggccctctttcaggcaaac
ccagtttgttcttggccactggatggatacacaaatgtacacacagacac
acacatgcatgcacaaataaacacacacacaccatatagtaaaatttaaa
tgtgcattttaaaatgtaaaatgccaaagcctttattaggagcatgtctg
tgaaactcaatgtaggagggagacaaggaagttagaagagctatgagaaa
acatttcatgaaaatgagaaggaaggcagttcagtgaaattgtcttaaat
ttttatgaaacacaatcgagtactgttaggacttagaaagaattctctgg
ctaatattgcctattagaagaatctctgtcttccataggcatgttaactt
tataacgacaatacttatgccttgactgggtctattgtggaatacatgcc
cttagagataagaagggtgcattctgtgcactgtagctggggattttagc
caagatttttagagttggtctgcaagatacactgccatggttgacatagc
atatcctggtcatatttttctttccattgagtaatttattcagtctgata
ta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_47364712_47365506
seq2: B6Ng01-310M13.b_46_840

seq1  GAATTCAGAGATTTTCAATGGTCATATCCACTGCTGATCTCCATGAATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGATTTTCAATGGTCATATCCACTGCTGATCTCCATGAATCA  50

seq1  AGCATTATTTCCTCAGAGAAAACTCTGCTGTGTGATAAATCACTCACCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATTTCCTCAGAGAAAACTCTGCTGTGTGATAAATCACTCACCTC  100

seq1  AATTTCTCCTGAGTTGTTGAAGCAAGAGTGTGTGAATATGTGACTGCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTCCTGAGTTGTTGAAGCAAGAGTGTGTGAATATGTGACTGCTTT  150

seq1  ACATCTCTGCTGACCCCATATCTTCTTGAACTGTTGAACAAATTGTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCTGCTGACCCCATATCTTCTTGAACTGTTGAACAAATTGTTGGA  200

seq1  GCTGGTCTTCAACAATATAGGAAGAACATCCAAATGAGTTTTCAATAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTCTTCAACAATATAGGAAGAACATCCAAATGAGTTTTCAATAATT  250

seq1  GAACAATATGTAAAATTATGGGTTTGTTTCAACTTTAAAACAGATGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATATGTAAAATTATGGGTTTGTTTCAACTTTAAAACAGATGAAGT  300

seq1  CAATGGCTTTTCTGTACCCAAAGGATAAACAGGCTGAGAAAGAAATTAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGCTTTTCTGTACCCAAAGGATAAACAGGCTGAGAAAGAAATTAGG  350

seq1  GAAACTACATCTCAATAGTCACAAATAATATAAAATACCTTGGTGTGACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTACATCTCAATAGTCACAAATAATATAAAATACCTTGGTGTGACT  400

seq1  CTAACTAAGGAAGTGAAAGTTCTGTATGATAAAAACTTGAAGTCTCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTAAGGAAGTGAAAGTTCTGTATGATAAAAACTTGAAGTCTCTGAA  450

seq1  GAAAGAAATAAAAGAAGATCTCAGAAGATGGAAAGATCTATGCTCATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAATAAAAGAAGATCTCAGAAGATGGAAAGATCTATGCTCATGGA  500

seq1  TTGACAGAATCAATATAGTAAAAATGGCTATCCTGCCAAAAGCAATCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAGAATCAATATAGTAAAAATGGCTATCCTGCCAAAAGCAATCTAC  550

seq1  AGATTCAATGCAATACCCATCAAAATTATAACTCAGTTCTTCAACGAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAATGCAATACCCATCAAAATTATAACTCAGTTCTTCAACGAATT  600

seq1  AGAAAGGGCAATCAGCAGATTCATCTGGAATAACAAAAAACCTAGGATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGGCAATCAGCAGATTCATCTGGAATAACAAAAAACCTAGGATAG  650

seq1  CAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGAAATCACCATGCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGAAATCACCATGCCT  700

seq1  GACTTAAAGCTGTACTACAGAGCAATTGTGATTAAAAACTGCATGCTACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAAGCTGTACTACAGAGCAATTGTGATTAAAAACTGCATGCTACT  750

seq1  GGTATAGTGACAGACAAGTAGACCAATGGAATAGAATTGAAGACC  795
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATAGTGACAGACAAGTAGACCAATGGAATAGAATTGAAGACC  795


seq1: chr16_47440351_47440904
seq2: B6Ng01-310M13.g_68_621 (reverse)

seq1  TTCACAGACATGCTCCTAATAAAGGCTTTGGCATTTTACATTTTAAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGACATGCTCCTAATAAAGGCTTTGGCATTTTACATTTTAAAATG  50

seq1  CACATTTAAATTTTACTATATGGTGTGTGTGTGTTTATTTGTGCATGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTAAATTTTACTATATGGTGTGTGTGTGTTTATTTGTGCATGCAT  100

seq1  GTGTGTGTCTGTGTGTACATTTGTGTATCCATCCAGTGGCCAAGAACAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTCTGTGTGTACATTTGTGTATCCATCCAGTGGCCAAGAACAAA  150

seq1  CTGGGTTTGCCTGAAAGAGGGCCTGGGAATGATAAAGAAGAAGGGATCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTTTGCCTGAAAGAGGGCCTGGGAATGATAAAGAAGAAGGGATCAA  200

seq1  GAGAATAATGAAACCAAGGCATGGTTCTGATCAAGGCTCTAAGTTTAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATAATGAAACCAAGGCATGGTTCTGATCAAGGCTCTAAGTTTAATA  250

seq1  TTCAGCACTGCATGTATATATAGTGAAATTCCACTGAACTCATCCTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCACTGCATGTATATATAGTGAAATTCCACTGAACTCATCCTTTTT  300

seq1  TGTCCCTTTTTGCAAAGAAAATTCAGCATGGCAGTCTAATCTTCTAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTTTTTGCAAAGAAAATTCAGCATGGCAGTCTAATCTTCTAAGTT  350

seq1  CCTGTGGGAACTTGCACATGCAACCAAGGCAGATGACTCACTCCACCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGGAACTTGCACATGCAACCAAGGCAGATGACTCACTCCACCAAG  400

seq1  GCAAGTGCAGCCGAAGTAGTTGACTCCACCAAGATCTGATAAGGTCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGTGCAGCCGAAGTAGTTGACTCCACCAAGATCTGATAAGGTCCATT  450

seq1  GTGTCAAGTGTTCAAAGTCTGTTCAGGCTGCTCAAGGCTGGAAAGGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAGTGTTCAAAGTCTGTTCAGGCTGCTCAAGGCTGGAAAGGGCCA  500

seq1  GCTCAAGGCTGGGAAGGCCACACATTTGTTTGACACAGGATACATGTGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAAGGCTGGGAAGGCCACACATTTGTTTGACACAGGATACATGTGGA  550

seq1  ATTC  554
      ||||
seq2  ATTC  554


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