BAC Information

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BAC

Clone NameB6Ng01-310N04
Chromosome16 (Build37)
Map Location 7,490,081 - 7,583,728
singlet/doubletdoublet
Overlap genenone
Upstream geneA2bp1
Downstream gene4930511J11Rik, BC024814, Abat
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-310N04.bB6Ng01-310N04.g
ACCGA102697GA102698
length3451,150
definitionB6Ng01-310N04.b B6Ng01-310N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,490,081 - 7,490,425)(7,582,561 - 7,583,728)
sequence
ttgcacacacactatcaacactctgtcctgaagcaggctttgcaatgccc
ccttagcctcactggagaaaggtactgccactaccttggagctaaggcat
tgggctctttacatgactgtggccacttgaatcacacagtttgctccagt
tccccccttccttctacagtgtagaaagtgcaagcactgagaaaactggc
cagccaggaggaagattatgggtcaattccagattgctttctctatatcc
tgcagccaaagtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtcactgatttttcagaaacctg

gaattctcttattgcactgagttgttggacaaagaaccttccccttcaaa
agccaccaaagaaaatgagcagtgagcattctcctgaggagaatggcatg
aactgaaagaccacccactcagatcagaggatctctgcagcggtctagat
attgctccctggcatctcggagagtcctggctttcaaacaggagataaat
aatgaggaatggaagcaaaggaagaatgaggaatgaaacatgagcagaga
gagagaagttgattcttcatgctatggcaaagcttacctcagagaggtta
gaaaccaagaccctcagcacacggaatgactgtattctagacacatatgc
aactattgttacctggaagtagaagccataatcctaaatggtttagaagg
ctggtgtggatggataattctttctgtttgctttatttttatttttattt
ttatatttgttcttatttttgagactgaatctcttgtagcctaggttggc
ctcaagctttattcataactgagaaatacccttatcctcccacctcagtt
tcctaactgctgagaattcagatgagtacttccaggcctggttttgtgtc
tcatactttcaatgtctggttaaaataatgatctaggaatcatcaaggaa
aacatacaagtatttgaggttataaagtcttttctgccttgagaggttgg
gaggcatcattcctccccatctccttggatatgaaagcaaagcaaagagc
tgcatatgttttttttttttagaaatgctcatgtactctacattatttct
tttttaaaattttttattaggtattttcctcatttacatttccaatgcaa
tcccaaaagtcccccatacttaccccccactcccctacccacccactccc
ccttttggccctggcattcccctgtactggggcatataaagtttgcaagt
ccaatgggcctctctttcagtgatggccgactaggcatcttttgaaacat
atgcagcttagacaggagcctcccgggtactggttagtcatatgttgtcc
actaaggatgcagttccatatacttgatgccttctctagcttctcatgga
gaccttggtatccattcaatgctgactgtgacatccttctggtttgctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_7490081_7490425
seq2: B6Ng01-310N04.b_51_395

seq1  TTGCACACACACTATCAACACTCTGTCCTGAAGCAGGCTTTGCAATGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACACACACTATCAACACTCTGTCCTGAAGCAGGCTTTGCAATGCCC  50

seq1  CCTTAGCCTCACTGGAGAAAGGTACTGCCACTACCTTGGAGCTAAGGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCCTCACTGGAGAAAGGTACTGCCACTACCTTGGAGCTAAGGCAT  100

seq1  TGGGCTCTTTACATGACTGTGGCCACTTGAATCACACAGTTTGCTCCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCTTTACATGACTGTGGCCACTTGAATCACACAGTTTGCTCCAGT  150

seq1  TCCCCCCTTCCTTCTACAGTGTAGAAAGTGCAAGCACTGAGAAAACTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCTTCCTTCTACAGTGTAGAAAGTGCAAGCACTGAGAAAACTGGC  200

seq1  CAGCCAGGAGGAAGATTATGGGTCAATTCCAGATTGCTTTCTCTATATCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGGAGGAAGATTATGGGTCAATTCCAGATTGCTTTCTCTATATCC  250

seq1  TGCAGCCAAAGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCAAAGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  300

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGATTTTTCAGAAACCTG  345
      ||||||||||||||||||||||||   ||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTCACTGATTTTTCAGAAACCTG  345


seq1: chr16_7582561_7583728
seq2: B6Ng01-310N04.g_67_1216 (reverse)

seq1  CTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGAATGGAT-CAC  49
      ||||||||| |||||  ||||| ||||||||||| ||||||||||| |  
seq2  CTAGCAAAC-CAGAA--GGATG-TCACAGTCAGC-ATTGAATGGATACCA  45

seq1  AGGTCTCCCAATGGAGAAGCTAGAGAAAGCACCCAAGGAAATAAAGGGAA  99
      ||||||||  || |||||||||||||| ||| |     || || | ||||
seq2  AGGTCTCC--AT-GAGAAGCTAGAGAAGGCATC-----AAGTATATGGAA  87

seq1  CTGCAACCCTAGGTGGAACAACAATATGAACTAACCAGTACCCGGGA-GC  148
      ||||| || || |||| ||||| ||||| |||||||||||||||||| ||
seq2  CTGCATCCTTA-GTGG-ACAAC-ATATG-ACTAACCAGTACCCGGGAGGC  133

seq1  TCCTGTCTTTAGCTGCATATGTATCAAAAGATGGCCTAGTCGGCCATCAC  198
      ||||||| | |||||||||||| ||||||||| |||||||||||||||||
seq2  TCCTGTC-TAAGCTGCATATGTTTCAAAAGAT-GCCTAGTCGGCCATCAC  181

seq1  TGGAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGG  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  T-GAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTACAGG  230

seq1  GGAATGCCAGGGCCAAAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGGT  298
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGAATGCCAGGGCC-AAAAGGGGGAGTGGGTGGGTAGGGGAGTGGGGGGT  279

seq1  AAGTATGGGGGACTTTTGGGATTGCATTGGAAATGTAAATGAGGAAAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGGGGGACTTTTGGGATTGCATTGGAAATGTAAATGAGGAAAATA  329

seq1  CCTAATAAAAAATTTTAAAAAAGAAATAATGTAGAGTACATGAGCATTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATAAAAAATTTTAAAAAAGAAATAATGTAGAGTACATGAGCATTTC  379

seq1  T-AAAAAAAAAAACATATGCAGCTCTTTGCTTTGCTTTCATATCCAAGGA  447
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAACATATGCAGCTCTTTGCTTTGCTTTCATATCCAAGGA  429

seq1  GATGGGGAGGAATGATGCCTCCCAACCTCTCAAGGCAGAAAAGACTTTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGAGGAATGATGCCTCCCAACCTCTCAAGGCAGAAAAGACTTTAT  479

seq1  AACCTCAAATACTTGTATGTTTTCCTTGATGATTCCTAGATCATTATTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAAATACTTGTATGTTTTCCTTGATGATTCCTAGATCATTATTTT  529

seq1  AACCAGACATTGAAAGTATGAGACACAAAACCAGGCCTGGAAGTACTCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGACATTGAAAGTATGAGACACAAAACCAGGCCTGGAAGTACTCAT  579

seq1  CTGAATTCTCAGCAGTTAGGAAACTGAGGTGGGAGGATAAGGGTATTTCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTCTCAGCAGTTAGGAAACTGAGGTGGGAGGATAAGGGTATTTCT  629

seq1  CAGTTATGAATAAAGCTTGAGGCCAACCTAGGCTACAAGAGATTCAGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGAATAAAGCTTGAGGCCAACCTAGGCTACAAGAGATTCAGTCT  679

seq1  CAAAAATAAGAACAAATATAAAAATAAAAATAAAAATAAAGCAAACAGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAATAAGAACAAATATAAAAATAAAAATAAAAATAAAGCAAACAGAA  729

seq1  AGAATTATCCATCCACACCAGCCTTCTAAACCATTTAGGATTATGGCTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTATCCATCCACACCAGCCTTCTAAACCATTTAGGATTATGGCTTC  779

seq1  TACTTCCAGGTAACAATAGTTGCATATGTGTCTAGAATACAGTCATTCCG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCAGGTAACAATAGTTGCATATGTGTCTAGAATACAGTCATTCCG  829

seq1  TGTGCTGAGGGTCTTGGTTTCTAACCTCTCTGAGGTAAGCTTTGCCATAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAGGGTCTTGGTTTCTAACCTCTCTGAGGTAAGCTTTGCCATAG  879

seq1  CATGAAGAATCAACTTCTCTCTCTCTGCTCATGTTTCATTCCTCATTCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGAATCAACTTCTCTCTCTCTGCTCATGTTTCATTCCTCATTCTT  929

seq1  CCTTTGCTTCCATTCCTCATTATTTATCTCCTGTTTGAAAGCCAGGACTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTTCCATTCCTCATTATTTATCTCCTGTTTGAAAGCCAGGACTC  979

seq1  TCCGAGATGCCAGGGAGCAATATCTAGACCGCTGCAGAGATCCTCTGATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGATGCCAGGGAGCAATATCTAGACCGCTGCAGAGATCCTCTGATC  1029

seq1  TGAGTGGGTGGTCTTTCAGTTCATGCCATTCTCCTCAGGAGAATGCTCAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGGGTGGTCTTTCAGTTCATGCCATTCTCCTCAGGAGAATGCTCAC  1079

seq1  TGCTCATTTTCTTTGGTGGCTTTTGAAGGGGAAGGTTCTTTGTCCAACAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTTTCTTTGGTGGCTTTTGAAGGGGAAGGTTCTTTGTCCAACAA  1129

seq1  CTCAGTGCAATAAGAGAATTC  1168
      |||||||||||||||||||||
seq2  CTCAGTGCAATAAGAGAATTC  1150


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