BAC Information

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BAC

Clone NameB6Ng01-311M12
Chromosome16 (Build37)
Map Location 71,940,713 - 72,081,035
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039231
Downstream geneRobo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-311M12.bB6Ng01-311M12.g
ACCGA103415GA103416
length1,0121,024
definitionB6Ng01-311M12.b B6Ng01-311M12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,080,331 - 72,081,035)(71,940,713 - 71,941,732)
sequence
gaattcaccccaaaataagataactatgctgtcttttataacttaaagaa
tatggagtattttatttcatttaagccacaggataaatgtctcatttttt
tcactgtaagccacaaaactttaatgatgtaaatatgtacctgaatatgt
aaagcccatgattatttatgtcatttatgacttgatattcttcctacatt
actaaaatgtgagcaaaaaatatttgggaagtatacatatgtctgacttt
cacaaacatgcacacatagacaaacaggcacattgtcctagttatttgaa
aataggaaccaaaattaagaaaatgtgtccatgtgtctgcctgtaggaaa
gtctctgtgtacattttcttgattaatgattgaggatgactgtcccagga
caaaacccatgcatatatgagtcagggctgtagatgaatgttaactgaat
aagccaaggagaacaagtcaagaagaacccatccatgccctctgcttcaa
ttcctggtttcagattcctgccttgagtttctgctttggcttccctttat
gatggctataaaatataaagtaaaataaaccttccccccacccatgttgc
tttggccatgttgtttatcacatcagtagaaacctaactagaatgcacag
aaacaatagacatgtgtactcatacacacataatttagaaatattaaatt
taatgagctatggcttttccgtatgagtgcaaggcaggacagcattcata
aaaggacttaggcacagatcagattgttataaattttgtaactccttgca
tatttgtgacaagtgtagactaaacatccaaatgaaagagcatgcaggag
ctggacataggtcttcatgtgggttccctgacaactggagctggggttct
ctcttactgtgttgcctgccattggattctcttcccatgcctggttggcg
acagagggattattgtgagagccaggcctcaatcgagtgcgtgccgtgag
cattcgccatta
gaattcagcattaagtcatttcagtctttccttaagttataacttttcta
ttaaaaccacattgaaactatgtgattttttaaaatttatgattatgatt
agctatctatagtaatcttctacctattgggggttaatcacatacaaagt
gatgcagtcacatggcaagaatgttgagaaagggtaataaaataatttat
ctaaaatatcagagtctgggcatcatatatatatacacacatatatatga
atgaagcatttatatataaatttatgttatatatttacatatatttatat
atataaatacattttgaaatcatcttcaggtatatgtttaaagcatggct
tttctcatttagatattacattgctgttaaggagggcaagatagggaata
aaagcagctatccattgggtgcaatgtcttattttgtaacagaatgctgt
agactaaataataagtaaccagtagatatttattgcttataattttgaag
catagggaatccgaaaatcacggactgagagacctgccaggatgaagaat
gacttccttgtttacagtagccgcatttggttggttccttatacattgaa
gacatatcctctgtgtctctattatgaaaaaactagtactaattgtgaga
ataaatttccattacttaatcaccaaatccccctccacctcctaacacca
tctaatttataattcaaaattcaccttataaaaattgtaaggtagactaa
catacatgcaaccatagcagccagtcaagtcaatttttttttctacttaa
tttggatttttttccattttttattaggtatttagctcatttacatttcc
aaagctataccaaaagtcccccatacccacccacccccacttcccctacc
caccactccccctttttggccctggcgtcccatgtactggggcatataaa
gttttgcgtgatccactggacctctcgttccagtggatggccgactagac
aatcttttgatacataatgcagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72080331_72081035
seq2: B6Ng01-311M12.b_45_749 (reverse)

seq1  CATTAAATTTAATATTTCTAAATTATGTGTGTATGAGTACACATGTCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATTTAATATTTCTAAATTATGTGTGTATGAGTACACATGTCTAT  50

seq1  TGTTTCTGTGCATTCTAGTTAGGTTTCTACTGATGTGATAAACAACATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTGTGCATTCTAGTTAGGTTTCTACTGATGTGATAAACAACATGG  100

seq1  CCAAAGCAACATGGGTGGGGGGAAGGTTTATTTTACTTTATATTTTATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAACATGGGTGGGGGGAAGGTTTATTTTACTTTATATTTTATAG  150

seq1  CCATCATAAAGGGAAGCCAAAGCAGAAACTCAAGGCAGGAATCTGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCATAAAGGGAAGCCAAAGCAGAAACTCAAGGCAGGAATCTGAAACC  200

seq1  AGGAATTGAAGCAGAGGGCATGGATGGGTTCTTCTTGACTTGTTCTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGAAGCAGAGGGCATGGATGGGTTCTTCTTGACTTGTTCTCCTT  250

seq1  GGCTTATTCAGTTAACATTCATCTACAGCCCTGACTCATATATGCATGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATTCAGTTAACATTCATCTACAGCCCTGACTCATATATGCATGGG  300

seq1  TTTTGTCCTGGGACAGTCATCCTCAATCATTAATCAAGAAAATGTACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCCTGGGACAGTCATCCTCAATCATTAATCAAGAAAATGTACACA  350

seq1  GAGACTTTCCTACAGGCAGACACATGGACACATTTTCTTAATTTTGGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTTCCTACAGGCAGACACATGGACACATTTTCTTAATTTTGGTTC  400

seq1  CTATTTTCAAATAACTAGGACAATGTGCCTGTTTGTCTATGTGTGCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTCAAATAACTAGGACAATGTGCCTGTTTGTCTATGTGTGCATGT  450

seq1  TTGTGAAAGTCAGACATATGTATACTTCCCAAATATTTTTTGCTCACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAAAGTCAGACATATGTATACTTCCCAAATATTTTTTGCTCACATT  500

seq1  TTAGTAATGTAGGAAGAATATCAAGTCATAAATGACATAAATAATCATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAATGTAGGAAGAATATCAAGTCATAAATGACATAAATAATCATGG  550

seq1  GCTTTACATATTCAGGTACATATTTACATCATTAAAGTTTTGTGGCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACATATTCAGGTACATATTTACATCATTAAAGTTTTGTGGCTTAC  600

seq1  AGTGAAAAAAATGAGACATTTATCCTGTGGCTTAAATGAAATAAAATACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAAAATGAGACATTTATCCTGTGGCTTAAATGAAATAAAATACT  650

seq1  CCATATTCTTTAAGTTATAAAAGACAGCATAGTTATCTTATTTTGGGGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTCTTTAAGTTATAAAAGACAGCATAGTTATCTTATTTTGGGGTG  700

seq1  AATTC  705
      |||||
seq2  AATTC  705

seq1: chr16_71940713_71941732
seq2: B6Ng01-311M12.g_65_1088

seq1  GAATTCAGCATTAAGTCATTTCAGTCTTTCCTTAAGTTATAACTTTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATTAAGTCATTTCAGTCTTTCCTTAAGTTATAACTTTTCTA  50

seq1  TTAAAACCACATTGAAACTATGTGATTTTTTAAAATTTATGATTATGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCACATTGAAACTATGTGATTTTTTAAAATTTATGATTATGATT  100

seq1  AGCTATCTATAGTAATCTTCTACCTATTGGGGGTTAATCACATACAAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCTATAGTAATCTTCTACCTATTGGGGGTTAATCACATACAAAGT  150

seq1  GATGCAGTCACATGGCAAGAATGTTGAGAAAGGGTAATAAAATAATTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGTCACATGGCAAGAATGTTGAGAAAGGGTAATAAAATAATTTAT  200

seq1  CTAAAATATCAGAGTCTGGGCATCATATATATATACACACATATATATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATATCAGAGTCTGGGCATCATATATATATACACACATATATATGA  250

seq1  ATGAAGCATTTATATATAAATTTATGTTATATATTTACATATATTTATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGCATTTATATATAAATTTATGTTATATATTTACATATATTTATAT  300

seq1  ATATAAATACATTTTGAAATCATCTTCAGGTATATGTTTAAAGCATGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATACATTTTGAAATCATCTTCAGGTATATGTTTAAAGCATGGCT  350

seq1  TTTCTCATTTAGATATTACATTGCTGTTAAGGAGGGCAAGATAGGGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCATTTAGATATTACATTGCTGTTAAGGAGGGCAAGATAGGGAATA  400

seq1  AAAGCAGCTATCCATTGGGTGCAATGTCTTATTTTGTAACAGAATGCTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGCTATCCATTGGGTGCAATGTCTTATTTTGTAACAGAATGCTGT  450

seq1  AGACTAAATAATAAGTAACCAGTAGATATTTATTGCTTATAATTTTGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAATAATAAGTAACCAGTAGATATTTATTGCTTATAATTTTGAAG  500

seq1  CATAGGGAATCCGAAAATCACGGACTGAGAGACCTGCCAGGATGAAGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGAATCCGAAAATCACGGACTGAGAGACCTGCCAGGATGAAGAAT  550

seq1  GACTTCCTTGTTTACAGTAGCCGCATTTGGTTGGTTCCTTATACATTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCCTTGTTTACAGTAGCCGCATTTGGTTGGTTCCTTATACATTGAA  600

seq1  GAAATATCCTCTGTGTCTCTATTATGAAAAAACTAGTACTAATTGTGAGA  650
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATATCCTCTGTGTCTCTATTATGAAAAAACTAGTACTAATTGTGAGA  650

seq1  ATAAATTTCCATTACTTAATCACCAAATCCCCCTCCACCTCCTAACACCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTCCATTACTTAATCACCAAATCCCCCTCCACCTCCTAACACCA  700

seq1  TCTAATTTATAATTCAAAATTCACCTTATAAAAATTGTAAGGTAGACTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTTATAATTCAAAATTCACCTTATAAAAATTGTAAGGTAGACTAA  750

seq1  CATACATGCAACCATAGCAGCCAGTCAAGTCAA-TTTTTTTTCTACTTAA  799
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CATACATGCAACCATAGCAGCCAGTCAAGTCAATTTTTTTTTCTACTTAA  800

seq1  TTTGGATTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATTTTTTTCCATTTTTTATTAGGTATTTAGCTCATTTACATTTCC  850

seq1  AAAGCTATACCAAAAGTCCCCCATACCCACCCACCCCCAC-TCCCCTACC  898
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTTCCCCTACC  900

seq1  CACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATA  948
      || ||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  CA-CCACTCCCCCTTTTTGGCCCTGGCG-TCCCATGTACTGGGGCATATA  948

seq1  AAG-TTTGCGTG-TCCAATGGGCCTCTCTTTCCAGT-GATGGCCGACTAG  995
      ||| |||||||| |||| ||| |||||| ||||||| |||||||||||||
seq2  AAGTTTTGCGTGATCCACTGGACCTCTCGTTCCAGTGGATGGCCGACTAG  998

seq1  ACCATCTTTTGATACAT-ATGCAGCT  1020
      || |||||||||||||| ||||||||
seq2  ACAATCTTTTGATACATAATGCAGCT  1024