BAC Information

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BAC

Clone NameB6Ng01-313M02
Chromosome16 (Build37)
Map Location 88,827,783 - 88,970,631
singlet/doubletdoublet
Overlap geneKrtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10
Upstream geneLOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14
Downstream geneEG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313M02.bB6Ng01-313M02.g
ACCGA104879GA104880
length1,1921,156
definitionB6Ng01-313M02.b B6Ng01-313M02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,827,783 - 88,828,992)(88,969,468 - 88,970,631)
sequence
gaattctcgtaacagaaatctgattcagtaattcctggaaccctagaaga
acagctcatttttcaaactttgtccttaaattttagaccaagtaatcata
acttttcatgaaattagtctcagctcattttcactgtgtaatttgtgctg
agaacaatggcatacaatgtctttccatttctccaaggttacttaggcaa
tttcctgtaccagtgaaccatctctacagtaagctatgctgcaccttgtg
gaagagtacagaaacatcttaacacttcattttctgggaagaatatatat
gctaattgatagatacacaacataagcaactccaaaataatgtcttcaca
tttccatctcacttgatacctttccctacccatgtgctgtacctaagggt
catttgtaaccatgagttctaagtcttaaacctttcatgacattgacaca
agacagatattcttcacattctttaataatgtttaaaccatgtgcaataa
aaattaaataaaaagaaaagaaaagcagtatggctatacgataacttttc
agaacttgctactttgttgcctgggacaccagtaccaccagctggaaaag
agatgtatcctatgaagacaaagatattttgtttcgataatgaagcttat
taagtttgttaataacttccaccataaagcaatgaaggtgtggggacaca
agattctaattaaaatataaaaaggttggccacatatcccagggtggtag
agcacacatgggtccacaaaattgttatccaggagaaaagaatggaaaag
aggagaaaaaaaaaagaagaaaagagaaagactacaaagggattctgtga
tgtaaatattttacagtctaatgttctataagcactcatgtaaacaatgg
tcctctcagccttatatagtttgtaacataattcacaaattgtgttataa
aacattgaacgtgaatctttttctcccaaggattagcattgcactgtcca
ctcataacatccacaacatttagaggagacatgtaaaaggggatttattt
ctttctattttcacaagctctaactgaacatcaattttcttcagaataca
aacttttgtagagtgtgacaagccagattattgctgcactatcaatcatc
aattagagctggcaataaataaagcactctattctttaaaga
gaattctttagcactcattatcccccttgtgctttaatgaaaccacataa
accctgttccacaatcactctttgaaatttatattgagatctaatattct
tgccattgaaagcatttgaataatttccaagacactctgaggaatatttc
ttaatctttaaagtccttcatttcttggactaaactatgacataaatttt
actgtttaatcctttgtagtttcatagttagttatctggcattaaataga
cttatattgccttgccaccaacccaggtgtgtttatctcaagaatatgga
acaatgatttgaatttgtttattactcatattcctatataatgaatggcc
ctgccagtatgccgattgaaggtatcttttcattttaggctgtaagttta
catactgctttgactaatctttctaactacagacttcattagatgtcagt
taagagtttgtcttctacttcactaatatttctctctgttttttttcttt
tcttagacacatgcttattattctgattattttctgatattatccagtgt
catccattatgtttttacttgactctgctattcctcagctgcactggaat
ttagtgttcatacagatgtgatttggacacttttagctatttcctataat
tttaaattaactttattcttttatttatttttactcttattctttgaatt
tttaaagtatttgttccatttttaattcgtgtgtgtgtatgtgtgtgcat
acttgcatacatgcatgtatcatgtttgagtatatgaattgtatgtgcca
ttaacatggaatcctgaagaagtggttgtattccatagagatggaattca
atgtattggtgtgtcacttaatatggatactgggaattgatccctgactc
ctgaacagtcagcaagtgctcttaataccgagccagctcatgtcttcaca
cctgattttgaatatgtgcatgcaatgatccttgccttttctatcttctt
tcttctcctgaattacactaactagtgattcttttctatttgttttacct
cataataactttgtgcaatgagaattatttgcatttctggtcattaaagt
tcatcataggcgctgtctataagtatttggtatgaatctaagacatcagt
tcatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88827783_88828992
seq2: B6Ng01-313M02.b_45_1236

seq1  GAATTCTCGTAACAGAAATCTGATTCAGTAATTCCTGGAACCCTAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGTAACAGAAATCTGATTCAGTAATTCCTGGAACCCTAGAAGA  50

seq1  ACAGCTCATTTTTCAAACTTTGTCCTTAAATTTTAGACCAAGTAATCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCATTTTTCAAACTTTGTCCTTAAATTTTAGACCAAGTAATCATA  100

seq1  ACTTTTCATGAAATTAGTCTCAGCTCATTTTCACTGTGTAATTTGTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCATGAAATTAGTCTCAGCTCATTTTCACTGTGTAATTTGTGCTG  150

seq1  AGAACAATGGCATACAATGTCTTTCCATTTCTCCAAGGTTACTTAGGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATGGCATACAATGTCTTTCCATTTCTCCAAGGTTACTTAGGCAA  200

seq1  TTTCCTGTACCAGTGAACCATCTCTACAGTAAGCTATGCTGCACCTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTACCAGTGAACCATCTCTACAGTAAGCTATGCTGCACCTTGTG  250

seq1  GAAGAGTACAGAAACATCTTAACACTTCATTTTCTGGGAAGAATATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTACAGAAACATCTTAACACTTCATTTTCTGGGAAGAATATATAT  300

seq1  GCTAATTGATAGATACACAACATAAGCAACTCCAAAATAATGTCTTCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAATTGATAGATACACAACATAAGCAACTCCAAAATAATGTCTTCACA  350

seq1  TTTCCATCTCACTTGATACCTTTCCCTACCCATGTGCTGTACCTAAGGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATCTCACTTGATACCTTTCCCTACCCATGTGCTGTACCTAAGGGT  400

seq1  CATTTGTAACCATGAGTTCTAAGTCTTAAACCTTTCATGACATTGACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTAACCATGAGTTCTAAGTCTTAAACCTTTCATGACATTGACACA  450

seq1  AGACAGATATTCTTCACATTCTTTAATAATGTTTAAACCATGTGCAATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGATATTCTTCACATTCTTTAATAATGTTTAAACCATGTGCAATAA  500

seq1  AAATTAAATAAAAAGAAAAGAAAAGCAGTATGGCTATACGATAACTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAATAAAAAGAAAAGAAAAGCAGTATGGCTATACGATAACTTTTC  550

seq1  AGAACTTGCTACTTTGTTGCCTGGGACACCAGTACCACCAGCTGGAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTGCTACTTTGTTGCCTGGGACACCAGTACCACCAGCTGGAAAAG  600

seq1  AGATGTATCCTATGAAGACAAAGATATTTTGTTTCGATAATGAAGCTTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTATCCTATGAAGACAAAGATATTTTGTTTCGATAATGAAGCTTAT  650

seq1  TAAGTTTGTTAATAACTTCCACCATAAAGCAATGAAGGTGTGGGGACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGTTAATAACTTCCACCATAAAGCAATGAAGGTGTGGGGACACA  700

seq1  AGATTCTAATTAAAATATAAAAAGGTTGGCCACATATCCCAGGGTGGTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTAATTAAAATATAAAAAGGTTGGCCACATATCCCAGGGTGGTAG  750

seq1  AGCACACATGGGTCCACAAAATTGTTATCCAGGAGAAAAGAATGGAAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACATGGGTCCACAAAATTGTTATCCAGGAGAAAAGAATGGAAAAG  800

seq1  AGGAGAAAAAAAAAAGAAGAAAAGAGAAAGACTACAAAGGGATTCTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAAAAAAAAAGAAGAAAAGAGAAAGACTACAAAGGGATTCTGTGA  850

seq1  TGTAAATATTTTACAGTCTAATGTTCTATAAGCACTCATGTAAACAATGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATATTTTACAGTCTAATGTTCTATAAGCACTCATGTAAACAATGG  900

seq1  TCCTCTCAGCCTTATATAGTTTGTAACATAATTCACAAATTGTGTTAT-A  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCCTCTCAGCCTTATATAGTTTGTAACATAATTCACAAATTGTGTTATAA  950

seq1  AACATTGAACGTGAATCTTTTTTCTCCCAAGGATTAGCATTGCACTGTTC  999
      ||||||||||||||||| ||||||||||||||||||||||||||||| ||
seq2  AACATTGAACGTGAATC-TTTTTCTCCCAAGGATTAGCATTGCACTG-TC  998

seq1  CACTCATAACATCCACAACATTTAGAGGGAGACATGTAAAAAGGGGATTT  1049
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  CACTCATAACATCCACAACATTTAGA-GGAGACATGT-AAAAGGGGATTT  1046

seq1  ATTTCTTTCTATTTTCAACCAAGCTTCTAAACTTGGAACATCAAATTTTT  1099
      |||||||||||||||||  ||||| ||| ||||  |||||||||  ||||
seq2  ATTTCTTTCTATTTTCA--CAAGC-TCT-AACT--GAACATCAA--TTTT  1088

seq1  CTTTCCAGAATACAAACTTTTGTAGAGTGTTGAACCAGGCAGGATTATTG  1149
      |||  |||||||||||||||||||||||| |||  || ||  ||||||||
seq2  CTT--CAGAATACAAACTTTTGTAGAGTG-TGA--CAAGCCAGATTATTG  1133

seq1  CTGCATCATCCATTTCATCACATTTTGAAGCCTGGGATAAATAAAGCA-T  1198
      |||||  ||| |  ||||||    ||  |||  |  |||||||||||| |
seq2  CTGCACTATCAA--TCATCA---ATTAGAGCTGGCAATAAATAAAGCACT  1178

seq1  CTAT--CTTAAAGA  1210
      ||||   |||||||
seq2  CTATTCTTTAAAGA  1192

seq1: chr16_88969468_88970631
seq2: B6Ng01-313M02.g_66_1221 (reverse)

seq1  ATATGGAAACTGAATGTCTTAAGACTCAATACAAATAACTTATAGACAGC  50
      |||||  ||||| ||||||| ||| || |||| ||  |||||||||||||
seq2  ATATG--AACTG-ATGTCTT-AGATTC-ATACCAAATACTTATAGACAGC  45

seq1  G-CTATGATGAACTTTTAATGACCAGAAATGCAAATAATCTTCATTTGCA  99
      | ||||||||||| |||||||||||||||||||||||||  ||| |||||
seq2  GCCTATGATGAAC-TTTAATGACCAGAAATGCAAATAATTCTCA-TTGCA  93

seq1  CAAAG-TATTATGA-GTAAAACAAATAGAAAAG-ATCACTAGTTAGTTGG  146
      ||||| |||||||| |||||||||||||||||| |||||||||||||  |
seq2  CAAAGTTATTATGAGGTAAAACAAATAGAAAAGAATCACTAGTTAGT--G  141

seq1  TAATTTCAGGGAGAGAAAG-AGATAG-AGAGGCAAGGATCATTGCATGCA  194
      ||| ||||||   |||||| |||||| | |||||||||||||||||||||
seq2  TAA-TTCAGGAGAAGAAAGAAGATAGAAAAGGCAAGGATCATTGCATGCA  190

seq1  CCAATATTCAAAATCAGGTGGTGAAGACATGAGCTGGCTCGGTTATTAAG  244
      |  |||||||||||||||| |||||||||||||||||||||| |||||||
seq2  C--ATATTCAAAATCAGGT-GTGAAGACATGAGCTGGCTCGG-TATTAAG  236

seq1  AGCACTTGCTGACTGTTCAGGAGTCAGGGATCAATTCCCAGTATCCATAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTGCTGACTGTTCAGGAGTCAGGGATCAATTCCCAGTATCCATAT  286

seq1  TAAGTGACACACCAATACATTGAATTCCATCTCTATGGAATACAACCACT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGACACACCAATACATTGAATTCCATCTCTATGGAATACAACCACT  336

seq1  TCTTCAGGATTCCATGTTAATGGCACATACAATTCATATACTCAAACATG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGATTCCATGTTAATGGCACATACAATTCATATACTCAAACATG  386

seq1  ATACATGCATGTATGCAAGTATGCACACACATACACACACACGAATTAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCATGTATGCAAGTATGCACACACATACACACACACGAATTAAA  436

seq1  AATGGAACAAATACTTTAAAAATTCAAAGAATAAGAGTAAAAATAAATAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAACAAATACTTTAAAAATTCAAAGAATAAGAGTAAAAATAAATAA  486

seq1  AAGAATAAAGTTAATTTAAAATTATAGGAAATAGCTAAAAGTGTCCAAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATAAAGTTAATTTAAAATTATAGGAAATAGCTAAAAGTGTCCAAAT  536

seq1  CACATCTGTATGAACACTAAATTCCAGTGCAGCTGAGGAATAGCAGAGTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTATGAACACTAAATTCCAGTGCAGCTGAGGAATAGCAGAGTC  586

seq1  AAGTAAAAACATAATGGATGACACTGGATAATATCAGAAAATAATCAGAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAACATAATGGATGACACTGGATAATATCAGAAAATAATCAGAA  636

seq1  TAATAAGCATGTGTCTAAGAAAAGAAAAAAAACAGAGAGAAATATTAGTG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAGCATGTGTCTAAGAAAAGAAAAAAAACAGAGAGAAATATTAGTG  686

seq1  AAGTAGAAGACAAACTCTTAACTGACATCTAATGAAGTCTGTAGTTAGAA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAGACAAACTCTTAACTGACATCTAATGAAGTCTGTAGTTAGAA  736

seq1  AGATTAGTCAAAGCAGTATGTAAACTTACAGCCTAAAATGAAAAGATACC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGTCAAAGCAGTATGTAAACTTACAGCCTAAAATGAAAAGATACC  786

seq1  TTCAATCGGCATACTGGCAGGGCCATTCATTATATAGGAATATGAGTAAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCGGCATACTGGCAGGGCCATTCATTATATAGGAATATGAGTAAT  836

seq1  AAACAAATTCAAATCATTGTTCCATATTCTTGAGATAAACACACCTGGGT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTCAAATCATTGTTCCATATTCTTGAGATAAACACACCTGGGT  886

seq1  TGGTGGCAAGGCAATATAAGTCTATTTAATGCCAGATAACTAACTATGAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCAAGGCAATATAAGTCTATTTAATGCCAGATAACTAACTATGAA  936

seq1  ACTACAAAGGATTAAACAGTAAAATTTATGTCATAGTTTAGTCCAAGAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAAAGGATTAAACAGTAAAATTTATGTCATAGTTTAGTCCAAGAAA  986

seq1  TGAAGGACTTTAAAGATTAAGAAATATTCCTCAGAGTGTCTTGGAAATTA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGACTTTAAAGATTAAGAAATATTCCTCAGAGTGTCTTGGAAATTA  1036

seq1  TTCAAATGCTTTCAATGGCAAGAATATTAGATCTCAATATAAATTTCAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAATGCTTTCAATGGCAAGAATATTAGATCTCAATATAAATTTCAAA  1086

seq1  GAGTGATTGTGGAACAGGGTTTATGTGGTTTCATTAAAGCACAAGGGGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATTGTGGAACAGGGTTTATGTGGTTTCATTAAAGCACAAGGGGGA  1136

seq1  TAATGAGTGCTAAAGAATTC  1164
      ||||||||||||||||||||
seq2  TAATGAGTGCTAAAGAATTC  1156