BAC Information

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BAC

Clone NameB6Ng01-316H14
Chromosome16 (Build37)
Map Location 90,925,865 - 91,108,013
singlet/doubletdoublet
Overlap gene1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863
Downstream geneH3f3a-ps2, Olig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316H14.bB6Ng01-316H14.g
ACCGA106861GA106862
length1,0121,107
definitionB6Ng01-316H14.b B6Ng01-316H14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,107,020 - 91,108,013)(90,925,865 - 90,926,963)
sequence
gaattcttggcatagcggatcacagtggaccacgggcgcgtccaaccagc
aaggtgttttatgtggtgttttttggttagcctaggacctgccagcagca
gcagcaaacatcaagctaactttctcagaagcatcctagtcttcgaaggt
gggggagaagttgttccttgggagatcccctgagtatcttaattgatggg
tgcattcagcactcagatacaacacatttctatttcttacaaagggtgac
tagagaggtggcccagtggtgacaaacgctggctgctctttcagggacca
gagttctattcctagcactcatatgaaagctgggaatccataattccggg
tctagtgactccaatgccctctgctggcacataagtggcagacagttatc
tctgcgggcaaaacgcccatacacacaaaatgaaaatattcaaaagggtg
aaaagagacacaaagggggcgcctgtcactgtaacaggaatcccgcagaa
aaacacagcacctttgagatcaccctcagcaaggtgttcaacctcagcag
gcactgacgaccggaggcgatccgcaaaaccacatacgtgtggaatgaga
aaattccacacatctctctctctctctctctctctctctctctctctctc
tctcttacacacacacacacacacacacttaaaaaaaaagagttttggaa
attctccgaaaccaaagatgaaagtaactactaagaagtataaacaggag
gattagccaaaacctaaatgtgcaaaattaagtacttttttataatagaa
aatacggagctataattttaatttaaaaatggaaatgcaaggaagagaaa
acattttcgaggaggaaaaagaaagaaagaaaaaaaaaaagatgttatag
ctacattccagaggcagaaatggcaagcatcttggggtgctaaattgcct
accatggcttgagaaaaaatattcctccgttaaagcagggcagaaattgc
caagagaaaaag
gaattcaacccatccacatggagaatgacaagactgcagccagcggcctc
tagtggccatgacggctgagttccacatcagctacggaccagctggctat
cttgctacagaggaaactcagatccactccaacacaggcacacacaaggt
aagggacaggaaagacatggctctcatgacaccaacaagttaagtcctta
gatgtgacacagctgtcctaaaacattctcttttgaatgtgtatttatta
agttctaaaactgtgaatgacttatttcaaaaattcaaactaaaggaaaa
ccaggaaggtaggaatttggtgggttgaggttctgacagtcaagtgttgg
cttcacctgggccgccactttatgtcttttacgccatgaaaatgtctttt
caaagccgtgttgtcagcccacggggagttcagacaggagtcatcgtcat
tctcttccagtttctggaaataaacgcgccttactcaggacaacacttca
gaggtagttcatatagactgagggaaggacccgggtcacttcctgccacc
ccagcacgcccctgccagtagtgggacccccacggtctaacactggagac
agccttggagagctggaaggccttccccagcactgtgtggatggatggta
gagggcccggcccgtgggggaggcacgggatgcacggtgtgcccagctcc
actgcccctgccacccaatggctaccttgagctcctcctgtcttctgtgg
tagaacagcatcagctgcttgtgttcttcactgctgatgacaggctcccg
ggctggggcaccctgccctctctgcaaaggcaaagggcagagtcaacagg
gcgccaagacattctctttgcagggacatcagagagtaacaggtttattc
tatagctgtctctgctaacagctaagatgatgggcctgctaagccactgt
ggggtcgggcatgggcatggatatggctgggcgcccttggattggtagtg
gacaccatctatatcatgggtccagccacagacaggtgatactcagagtc
ataccttaaggaaacagaaattctccaagcttgtttccccaaggtaccgc
agtaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91107020_91108013
seq2: B6Ng01-316H14.b_48_1059 (reverse)

seq1  CTTTTTC---TTGCTATTTCT-ACCTGCTTT-ACGGA-GAATATTTTCTC  44
      |||||||   | || ||||||  |||||||| ||||| ||||||||| ||
seq2  CTTTTTCTCTTGGCAATTTCTGCCCTGCTTTAACGGAGGAATATTTTTTC  50

seq1  ---AGGCATGGT-GGCAA-TTAGCACCC--AGATGCTTGCCA-TTCTGCC  86
         || |||||| ||||| |||||||||  |||||||||||| |||||||
seq2  TCAAGCCATGGTAGGCAATTTAGCACCCCAAGATGCTTGCCATTTCTGCC  100

seq1  TCTGGAATGTAACTATAACATC-TTTTTTTTTTCTTTCTTTCTTTTTCCT  135
      ||||||||||| |||||||||| |||||||||||||||||||||||||||
seq2  TCTGGAATGTAGCTATAACATCTTTTTTTTTTTCTTTCTTTCTTTTTCCT  150

seq1  CCTCGAAAATGTTTTCTCTTCCTTGCATTTTCATTTTTAAATTAAAATTA  185
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CCTCGAAAATGTTTTCTCTTCCTTGCATTTCCATTTTTAAATTAAAATTA  200

seq1  TAGCTCCGTATTTTCTATT-TTAAAAAGTACTTAATTTTGCACA-TTAGG  233
      ||||||||||||||||||| | |||||||||||||||||||||| |||||
seq2  TAGCTCCGTATTTTCTATTATAAAAAAGTACTTAATTTTGCACATTTAGG  250

seq1  TTTTGGCTAATCCTCCTGTTTATACTTCTTAGTAGTTACTTTCATCTTTG  283
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCTAATCCTCCTGTTTATACTTCTTAGTAGTTACTTTCATCTTTG  300

seq1  GTTTCGGAGAATTTCC-AAACTCTTTTTTTTTAAGTGTGTGTGTGTGTGT  332
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTCGGAGAATTTCCAAAACTCTTTTTTTTTAAGTGTGTGTGTGTGTGT  350

seq1  GTGTGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  382
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  400

seq1  TGTGTGGAATTTTCTCATTCCACACGTATGTGGTTTTGCGGATCGCCTCC  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAATTTTCTCATTCCACACGTATGTGGTTTTGCGGATCGCCTCC  450

seq1  GGTCGTCAGTGCCTGCTGAGGTTGAACACCTTGCTGAGGGTGATCTCAAA  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGTCAGTGCCTGCTGAGGTTGAACACCTTGCTGAGGGTGATCTCAAA  500

seq1  GGTGCTGTGTTTTTCTGCGGGATTCCTGTTACAGTGACAGGCGCCCCCTT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGTGTTTTTCTGCGGGATTCCTGTTACAGTGACAGGCGCCCCCTT  550

seq1  TGTGTCTCTTTTCACCCTTTTGAATATTTTCATTTTGTGTGTATGGGCGT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCTTTTCACCCTTTTGAATATTTTCATTTTGTGTGTATGGGCGT  600

seq1  TTTGCCCGCAGAGATAACTGTCTGCCACTTATGTGCCAGCAGAGGGCATT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCCGCAGAGATAACTGTCTGCCACTTATGTGCCAGCAGAGGGCATT  650

seq1  GGAGTCACTAGACCCGGAATTATGGATTCCCAGCTTTCATATGAGTGCTA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCACTAGACCCGGAATTATGGATTCCCAGCTTTCATATGAGTGCTA  700

seq1  GGAATAGAACTCTGGTCCCTGAAAGAGCAGCCAGCGTTTGTCACCACTGG  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGAACTCTGGTCCCTGAAAGAGCAGCCAGCGTTTGTCACCACTGG  750

seq1  GCCACCTCTCTAGTCACCCTTTGTAAGAAATAGAAATGTGTTGTATCTGA  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTCTCTAGTCACCCTTTGTAAGAAATAGAAATGTGTTGTATCTGA  800

seq1  GTGCTGAATGCACCCATCAATTAAGATACTCAGGGGATCTCCCAAGGAAC  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAATGCACCCATCAATTAAGATACTCAGGGGATCTCCCAAGGAAC  850

seq1  AACTTCTCCCCCACCTTCGAAGACTAGGATGCTTCTGAGAAAGTTAGCTT  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTCCCCCACCTTCGAAGACTAGGATGCTTCTGAGAAAGTTAGCTT  900

seq1  GATGTTTGCTGCTGCTGCTGGCAGGTCCTAGGCTAACCAAAAAACACCAC  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTTGCTGCTGCTGCTGGCAGGTCCTAGGCTAACCAAAAAACACCAC  950

seq1  ATAAAACACCTTGCTGGTTGGACGCGCCCGTGGTCCACTGTGATCCGCTA  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACACCTTGCTGGTTGGACGCGCCCGTGGTCCACTGTGATCCGCTA  1000

seq1  TGCCAAGAATTC  994
      ||||||||||||
seq2  TGCCAAGAATTC  1012

seq1: chr16_90925865_90926963
seq2: B6Ng01-316H14.g_67_1173

seq1  GAATTCAACCCATCCACATGGAGAATGACAAGACTGCAGCCAGCGGCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCATCCACATGGAGAATGACAAGACTGCAGCCAGCGGCCTC  50

seq1  TAGTGGCCATGACGGCTGAGTTCCACATCAGCTACGGACCAGCTGGCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGCCATGACGGCTGAGTTCCACATCAGCTACGGACCAGCTGGCTAT  100

seq1  CTTGCTACAGAGGAAACTCAGATCCACTCCAACACAGGCACACACAAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTACAGAGGAAACTCAGATCCACTCCAACACAGGCACACACAAGGT  150

seq1  AAGGGACAGGAAAGACATGGCTCTCATGACACCAACAAGTTAAGTCCTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACAGGAAAGACATGGCTCTCATGACACCAACAAGTTAAGTCCTTA  200

seq1  GATGTGACACAGCTGTCCTAAAACATTCTCTTTTGAATGTGTATTTATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGACACAGCTGTCCTAAAACATTCTCTTTTGAATGTGTATTTATTA  250

seq1  AGTTCTAAAACTGTGAATGACTTATTTCAAAAATTCAAACTAAAGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAAAACTGTGAATGACTTATTTCAAAAATTCAAACTAAAGGAAAA  300

seq1  CCAGGAAGGTAGGAATTTGGTGGGTTGAGGTTCTGACAGTCAAGTGTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAAGGTAGGAATTTGGTGGGTTGAGGTTCTGACAGTCAAGTGTTGG  350

seq1  CTTCACCTGGGCCGCCACTTTATGTCTTTTACGCCATGAAAATGTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCTGGGCCGCCACTTTATGTCTTTTACGCCATGAAAATGTCTTTT  400

seq1  CAAAGCCGTGTTGTCAGCCCACGGGGAGTTCAGACAGGAGTCATCGTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCGTGTTGTCAGCCCACGGGGAGTTCAGACAGGAGTCATCGTCAT  450

seq1  TCTCTTCCAGTTTCTGGAAATAAACGCGCCTTACTCAGGACAACACTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCAGTTTCTGGAAATAAACGCGCCTTACTCAGGACAACACTTCA  500

seq1  GAGGTAGTTCATATAGACTGAGGGAAGGACCCGGGTCACTTCCTGCCACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGTTCATATAGACTGAGGGAAGGACCCGGGTCACTTCCTGCCACC  550

seq1  CCAGCACGCCCCTGCCAGTAGTGGGACCCCCACGGTCTAACACTGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACGCCCCTGCCAGTAGTGGGACCCCCACGGTCTAACACTGGAGAC  600

seq1  AGCCTTGGAGAGCTGGAAGGCCTTCCCCAGCACTGTGTGGATGGATGGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGAGAGCTGGAAGGCCTTCCCCAGCACTGTGTGGATGGATGGTA  650

seq1  GAGGGCCCGGCCCGTGGGGGAGGCACGGGATGCACGGTGTGCCCAGCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCCGGCCCGTGGGGGAGGCACGGGATGCACGGTGTGCCCAGCTCC  700

seq1  ACTGCCCCTGCCACCCAATGGCTACCTTGAGCTCCTCCTGTCTTCTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCCTGCCACCCAATGGCTACCTTGAGCTCCTCCTGTCTTCTGTGG  750

seq1  TAGAACAGCATCAGCTGCTTGTGTTCTTCACTGCTGATGACAGGCTCCCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAGCATCAGCTGCTTGTGTTCTTCACTGCTGATGACAGGCTCCCG  800

seq1  GGCTGGGGCACCCTGCCCTCTCTGCAAAGGC-AAGGGCAGAGTCAACAGG  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGCTGGGGCACCCTGCCCTCTCTGCAAAGGCAAAGGGCAGAGTCAACAGG  850

seq1  GCGCCAAGACATTCTCTTTGCAGGGACATCAGAGAGTAACAGGTTTATTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCAAGACATTCTCTTTGCAGGGACATCAGAGAGTAACAGGTTTATTC  900

seq1  TATAGCTGTCTCTGCTAACAGCTAAGATGATGGG-CTGCTAAGCCACTGT  948
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATAGCTGTCTCTGCTAACAGCTAAGATGATGGGCCTGCTAAGCCACTGT  950

seq1  GGGGTCGGGCATGGGCATGGATATGGCT-GGCGCCC-TGGATTTGTAGTG  996
      |||||||||||||||||||||||||||| ||||||| |||||| ||||||
seq2  GGGGTCGGGCATGGGCATGGATATGGCTGGGCGCCCTTGGATTGGTAGTG  1000

seq1  GACACCATCTATATCAT-GGTCCAG-CACAGACAGGGTGATACTCAGAGT  1044
      ||||||||||||||||| ||||||| |||||||| |||||||||||||||
seq2  GACACCATCTATATCATGGGTCCAGCCACAGACA-GGTGATACTCAGAGT  1049

seq1  CATAACTT-AGGAAACAGAAA-TCTCCAAGCCTTGTTCCCCAAAGTA-CG  1091
      |||| ||| |||||||||||| ||||||||| |  |||||||| ||| ||
seq2  CATACCTTAAGGAAACAGAAATTCTCCAAGCTTGTTTCCCCAAGGTACCG  1099

seq1  CAGTAATG  1099
      ||||||||
seq2  CAGTAATG  1107