MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-316J09
Chromosome	16 (Build37)
Map Location	46,088,781 - 46,224,282
singlet/doublet	doublet
Overlap gene	Cd96, AL024110
Upstream gene	Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik
Downstream gene	Pvrl3, LOC628757
Link	Open Mouse BAC browser

Click to get alignment info.

name	Ccdc80 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67896 MGI:1915146
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Slc35a5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74102 MGI:1921352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atg3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67841 MGI:1915091
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG547267 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:547267 MGI:3645112
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 372 ESTs, 7 Proteins

name	Btla (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208154 MGI:2658978
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Cd200 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17470 MGI:1196990
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC385905 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:385905
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 252 ESTs, 11 Proteins pseudo : _no_value

name	Gm609 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208166 MGI:2685455
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC628681 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628681
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	Slc9a10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208169 MGI:2685456
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gcet2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14525 MGI:102969
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC016579 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:212998 MGI:2384848
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tmprss7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208171 MGI:2686594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tagln3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56370 MGI:1926784
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Abhd10 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:213012 MGI:2442422
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Phldb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:208177 MGI:2444981
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG667418 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:667418 MGI:3647856
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Plcxd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433022 MGI:3647874
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 164 ESTs, 4 Proteins

name	4930546O09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78201 MGI:1925451
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Cd96 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:84544 MGI:1934368
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AL024110 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:11615
definition	note : expressed sequence AL024110 pseudo : _no_value

name	Pvrl3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58998 MGI:1930171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	LOC628757 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628757
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins pseudo : _no_value

name	Ccdc80 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625751 GeneID:67896 MGI:1915146
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : coiled-coil domain containing 80 transcript_id : NM_026439.2

name	Slc35a5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142388911 GeneID:74102 MGI:1921352
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 35, member A5 transcript_id : NM_028756.3

name	Atg3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142373537 GeneID:67841 MGI:1915091
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : autophagy-related 3 (yeast) transcript_id : NM_026402.2

name	EG547267 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149267538 GeneID:547267 MGI:3645112
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 372 ESTs, 7 Proteins product : predicted gene, EG547267 transcript_id : XM_001481099.1

name	Btla (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83700226 GeneID:208154 MGI:2658978
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : B and T lymphocyte associated transcript_id : NM_001037719.2

name	Btla (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:83700228 GeneID:208154 MGI:2658978
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : B and T lymphocyte associated transcript_id : NM_177584.3

name	Cd200 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111955311 GeneID:17470 MGI:1196990
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Cd200 antigen transcript_id : NM_010818.3

name	Gm609 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54312053 GeneID:208166 MGI:2685455
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 609, (NCBI) transcript_id : NM_001005854.1

name	Slc9a10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142345084 GeneID:208169 MGI:2685456
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : solute carrier family 9, isoform 10 transcript_id : NM_198106.2

name	Gcet2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142368277 GeneID:14525 MGI:102969
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : germinal center expressed transcript 2 transcript_id : NM_008099.3

name	BC016579 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21703777 GeneID:212998 MGI:2384848
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence, BC016579 transcript_id : NM_145389.1

name	Tmprss7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:117168266 GeneID:208171 MGI:2686594
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane serine protease 7 transcript_id : NM_172455.2

name	Tagln3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56118248 GeneID:56370 MGI:1926784
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transgelin 3 transcript_id : NM_019754.3

name	Abhd10 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31542467 GeneID:213012 MGI:2442422
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : abhydrolase domain containing 10 transcript_id : NM_172511.2

name	Phldb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802479 GeneID:208177 MGI:2444981
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : pleckstrin homology-like domain, family B, member 2 transcript_id : NM_153412.2

name	EG667418 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94400188 GeneID:667418 MGI:3647856
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : predicted gene, EG667418 transcript_id : XM_001003349.1

name	Plcxd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149267542 GeneID:433022 MGI:3647874
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 164 ESTs, 4 Proteins product : phosphatidylinositol-specific phospholipase C, X domain containing 2 transcript_id : XM_001481102.1

name	4930546O09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149267544 GeneID:78201 MGI:1925451
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 4930546O09 gene transcript_id : XM_001481103.1

name	Cd96 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:14209685 GeneID:84544 MGI:1934368
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : CD96 antigen transcript_id : NM_032465.1

name	Pvrl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12957493 GeneID:58998 MGI:1930171
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poliovirus receptor-related 3 transcript_id : NM_021496.1

name	Pvrl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:12957495 GeneID:58998 MGI:1930171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poliovirus receptor-related 3 transcript_id : NM_021497.1

name	Pvrl3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130458 GeneID:58998 MGI:1930171
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : poliovirus receptor-related 3 transcript_id : NM_021495.2

name	Ccdc80 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625752 CCDS:CCDS28192.1 GeneID:67896 MGI:1915146
definition	codon_start : 1 note : steroid sensitive gene 1 product : steroid-sensitive protein 1 protein_id : NP_080715.2

name	Slc35a5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229173 CCDS:CCDS28193.1 GeneID:74102 MGI:1921352
definition	GO_component : GO:0000139 - Golgi membrane [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA] GO_function : GO:0005338 - nucleotide-sugar transporter activity [Evidence IEA]; GO:0005351 - sugar porter activity [Evidence IEA] GO_process : GO:0015780 - nucleotide-sugar transport [Evidence IEA] codon_start : 1 product : solute carrier family 35, member A5 protein_id : NP_083032.2

name	Atg3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13385890 CCDS:CCDS28194.1 GeneID:67841 MGI:1915091
definition	GO_component : GO:0000153 - cytoplasmic ubiquitin ligase complex [Evidence ISS] GO_function : GO:0008639 - small protein conjugating enzyme activity [Evidence ISS] GO_process : GO:0006914 - autophagy [Evidence IEA]; GO:0006464 - protein modification [Evidence ISS]; GO:0015031 - protein transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : autophagy-related 3-like; APG3 autophagy 3-like product : autophagy Apg3p/Aut1p-like protein_id : NP_080678.1

name	EG547267 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149267539 GeneID:547267 MGI:3645112
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001481149.1

name	Btla (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:83700227 CCDS:CCDS28195.1 GeneID:208154 MGI:2658978
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IGI] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0030889 - negative regulation of B cell proliferation [Evidence IMP]; GO:0042130 - negative regulation of T cell proliferation [Evidence IMP] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; B and T lymphocyte attenuator product : B and T lymphocyte associated isoform 1 protein_id : NP_001032808.2

name	Btla (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29243938 CCDS:CCDS28196.1 GeneID:208154 MGI:2658978
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IGI] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0030889 - negative regulation of B cell proliferation [Evidence IMP]; GO:0042130 - negative regulation of T cell proliferation [Evidence IMP] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; B and T lymphocyte attenuator product : B and T lymphocyte associated isoform 2 protein_id : NP_808252.1

name	Cd200 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111955312 GeneID:17470 MGI:1196990
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] codon_start : 1 note : MRC OX-2; antigen identified by monoclonal antibody MRC OX-2 product : Cd200 antigen protein_id : NP_034948.3

name	Gm609 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54312054 CCDS:CCDS28197.1 GeneID:208166 MGI:2685455
definition	codon_start : 1 product : hypothetical protein LOC208166 protein_id : NP_001005854.1

name	Slc9a10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:37674259 CCDS:CCDS28198.1 GeneID:208169 MGI:2685456
definition	GO_component : GO:0009434 - flagellum (sensu Eukaryota) [Evidence IDA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005216 - ion channel activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0015299 - solute:hydrogen antiporter activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006885 - regulation of pH [Evidence IEA]; GO:0030317 - sperm motility [Evidence IMP] codon_start : 1 exception : mismatches in translation product : sperm-specific sodium proton exchanger protein_id : NP_932774.1

name	Gcet2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542887 CCDS:CCDS28199.1 GeneID:14525 MGI:102969
definition	codon_start : 1 exception : mismatches in translation product : germinal center expressed transcript 2 protein_id : NP_032125.2

name	BC016579 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703778 GeneID:212998 MGI:2384848
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC212998 protein_id : NP_663364.1

name	Tmprss7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:117168267 GeneID:208171 MGI:2686594
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 note : matriptase-3 product : transmembrane serine protease 7 protein_id : NP_766043.2

name	Tagln3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9790125 CCDS:CCDS28200.1 GeneID:56370 MGI:1926784
definition	codon_start : 1 note : neuronal protein Np25 product : transgelin 3 protein_id : NP_062728.1

name	Abhd10 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31542468 CCDS:CCDS28201.1 GeneID:213012 MGI:2442422
definition	GO_function : GO:0016787 - hydrolase activity [Evidence IEA] GO_process : GO:0006725 - aromatic compound metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : abhydrolase domain containing 10 protein_id : NP_766099.2

name	Phldb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23510303 CCDS:CCDS28202.1 GeneID:208177 MGI:2444981
definition	codon_start : 1 exception : mismatches in translation product : pleckstrin homology-like domain, family B, member 2 protein_id : NP_700461.1

name	EG667418 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94400189 GeneID:667418 MGI:3647856
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001003349.1

name	Plcxd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149267543 GeneID:433022 MGI:3647874
definition	codon_start : 1 product : similar to PLCXD2 protein protein_id : XP_001481152.1

name	4930546O09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149267545 GeneID:78201 MGI:1925451
definition	codon_start : 1 product : hypothetical protein LOC78201 protein_id : XP_001481153.1

name	Cd96 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:14209686 GeneID:84544 MGI:1934368
definition	GO_function : GO:0005515 - protein binding [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : T cell activation, increased late expression product : CD96 antigen protein_id : NP_115854.1

name	Pvrl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12957494 CCDS:CCDS28204.1 GeneID:58998 MGI:1930171
definition	GO_component : GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA] GO_process : GO:0007155 - cell adhesion [Evidence IDA]; GO:0016337 - cell-cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA] codon_start : 1 note : isoform beta is encoded by transcript variant beta; nectin-3 product : poliovirus receptor-related 3 isoform beta protein_id : NP_067471.1

name	Pvrl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12957496 CCDS:CCDS28205.1 GeneID:58998 MGI:1930171
definition	GO_component : GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA] GO_process : GO:0007155 - cell adhesion [Evidence IDA]; GO:0016337 - cell-cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA] codon_start : 1 note : isoform gamma is encoded by transcript variant gamma; nectin-3 product : poliovirus receptor-related 3 isoform gamma protein_id : NP_067472.1

name	Pvrl3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12957492 CCDS:CCDS28206.1 GeneID:58998 MGI:1930171
definition	GO_component : GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA] GO_process : GO:0007155 - cell adhesion [Evidence IDA]; GO:0016337 - cell-cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA] codon_start : 1 note : isoform alpha is encoded by transcript variant alpha; nectin-3 product : poliovirus receptor-related 3 isoform alpha protein_id : NP_067470.1

name	LOC628681 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:628681
definition	number : 1 pseudo : _no_value

name	LOC628757 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:628757
definition	number : 1 pseudo : _no_value

name	LOC628757 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:628757
definition	number : 2 pseudo : _no_value

name	LOC628757 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:628757
definition	number : 3 pseudo : _no_value

name	LOC385905 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149267541 GeneID:385905
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 mRNAs, 252 ESTs, 11 Proteins product : similar to proteasome alpha7/C8 subunit pseudo : _no_value transcript_id : XR_034995.1

clone name	MSMg01-377C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-390M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507G04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-201G20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-391B10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079O09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-278A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125D08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-210J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-166K05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499H12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-456M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-480A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511O14
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-091L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288N16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-358M20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-063C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356I15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-527K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487G14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-479E16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-370F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349N03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-311M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-466E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134H08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-348L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-329J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343B17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-538K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451P15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-365D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-540J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100E04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-104M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-048M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-379P13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-539G05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-191J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376C16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-393L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-046O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319P04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290L01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535D18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-482M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266A01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-463E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538N05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-519C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-531H23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389P10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-520H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-516A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115G21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340F05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-300E22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-420I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-426G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374O07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-324N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373D14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-522A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115K10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-115K11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437A14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446O02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-362J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-350D08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424N19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-343H09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482D23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-496J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382I17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163G19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-163M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-323K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-505I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-269P16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-386H15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377H07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435O07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-400K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158A15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-150J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-494H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317G16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-180M20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-140I03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127E01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-130J14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-312H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172I07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062N11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-060N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270A09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042I12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-017P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-191P20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-047C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172H23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-071L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145H11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-167M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155D20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-208M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254O05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152I04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-275J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-185K02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-164M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316J09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-335L10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122F24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-103O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-104I20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063C12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053M11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-222I01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-038O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-318M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-344E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169E19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-171B23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054F14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-242B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-046B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-256A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-290A16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-108C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321B04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-206G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085N15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080K15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-137P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-166L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-133F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-037M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-230J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002E08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159A21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-056D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-249J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129D12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013N18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-035L20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-225E11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-348I17
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-316J09.b	B6Ng01-316J09.g
ACC	GA106944	GA106945
length	1,187	994
definition	B6Ng01-316J09.b	B6Ng01-316J09.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(46,088,781 - 46,089,961)	(46,223,711 - 46,224,282)
sequence	gaattcaaagccttgacccaaaggcagacaggagaagaatgacaaagccc actgccacagagattcacttcattcaacatggctacatctattccaacaa ggacacacacttcgtgtgggtcaagcattcaaacacatgagtctgtggag gtattcctattcaaaccactacgaggtataagagacaaagaattagtgaa ttagagttatgtgaaacccagaaaaataaagaagggaggcagtgtaagga gaagtgaaggagagacaattataaagacagcatgctagagagaagtctga agacagggaagagaagtggcactttaagaaagtttcataacgaataaaga aagagaccgtgatcaccagggtgcctgaacaaaaggggacatttttgtag atccccaggcacaattttaatgcattgcctttgtttcatgcccaacgacc agacatttatttgagaagtatgttttagattttccttgcaccatgaaaat actagtttcatggcaagccattgttctctgatattttattaaaaggctca tcttcaaatgctcagagatgctttgaaagaaaaaaaagaagtgaaaaata ctctaatagtccatatggagtgaaagtttcctgcattgctgaggctacat ctaaaatattaacttaagaaaagaataacatcatcctgggagggactgtg acctctgtgctggggctgtctgctaggagatgtcattgagctgactcctc aagtgcctctctgtgcctcccttcctttggatgagttgattaatcctcat tttcaccttgacaggctttagaatctcactggaaacatactttggctgta actccaagggtatttccaaaaaggtttaactgaagaggtaagacatgtcc cgaatatgaatgacacatctggactaaggtccacactgaatagcaaggaa aagggagctgggctaacatctgtagccccggcactctggaggcagaagca gaatggatgtagagcttatgtgccactcctggcgacacagtgggggctga agccagcctgtgctgtttgagacccagagagagaatgcagaagtacaagt gaccaccacaatcaatcctctcttcacctgtgaatacagttagcagtgac tcatactcatgccgccaatgcttttctctggagaaaa	gaattcattaataaagtactcaaatcttagttttctttgtactaagcatg aaagaacaaaactctttattaatccaaaagcaactttaggttcacagaaa aatagacaacctacagagatttttcatatctctgtgtccccacctacaca acacctctgtttacatgcctcacaatttcttatctaattaagtcagtata ttatcactgcaaatccattttatttctctctctctctctctctcccatca ataataatcctctgtctacctatctatctttacattaatagaacccaatt ccttgtaaaagaaactctaagagctacctgtctagatgaccacataagag tacacaaggcaaatgccttttaggagctagagtagtccccaaccagattt caaatcttctgccaccttactttgaacttcccagccaccagaactatgaa ataagtttttgtttctatgataacttaatgaagccatttgaatagactaa cacaggaatgcactcacaatgttggtaccatacagaccatatctactatt ctaaacatcctttatgtgccctctatctgcccctctttcaatccatagca cacactactaattgatagtctctccagttatgtctttttcagaatgtcat atattcaaaatcatacaacatcctcagattagattttccttcacttaata cagtgaacttgagttcctccttttcttctagtggtttgttggctcatttc ctcttatctctgaatagcattctatggtctacttgtatcagttttttaaa acatgttcacttacttaaggacagtgtaactgcttccacgttttgaaaaa aagataaagtgattataaacactgatgcctaagtgttagcttgtagtaag tgctttgataacttacttctagattatatgataagagcacagtgggtttt ttaataacaaatttcaatctgccttttaataggcttcactcttg
quality values	Open. Hide. 46 31 33 38 62 41 23 43 62 62 62 62 62 62 54 41 47 62 47 33 62 62 62 62 62 62 62 47 62 62 62 59 28 20 29 32 28 38 40 46 62 46 59 59 62 62 62 62 62 62 62 59 59 59 62 59 59 62 62 62 59 59 59 59 62 62 62 59 62 62 54 59 62 62 59 62 62 62 59 62 54 54 56 59 62 62 59 62 62 59 62 62 62 62 59 62 62 59 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 59 59 59 59 59 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 54 54 62 62 62 62 59 54 54 54 49 62 62 62 62 62 49 42 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 54 58 54 54 58 58 58 58 58 58 53 58 58 58 58 58 52 58 58 54 58 58 58 58 58 54 58 58 58 58 58 58 54 58 50 58 54 54 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 52 58 58 58 58 58 58 54 58 58 58 58 58 58 53 58 58 58 58 58 58 45 42 58 58 54 58 58 58 51 58 58 58 49 47 50 51 58 58 58 58 58 58 58 46 58 58 58 50 58 58 38 14 38 49 58 52 54 52 58 58 53 53 58 58 58 53 52 49 47 41 58 49 58 32 37 58 50 58 58 58 54 50 58 33 39 52 50 49 41 58 58 50 58 58 52 58 58 58 58 41 27 58 58 41 28 51 58 53 51 35 27 43 58 53 53 54 53 52 51 51 49 58 38 44 47 52 54 39 51 52 51 53 53 39 18 54 46 28 39 30 54 47 49 39 38 49 42 53 42 51 51 41 31 26 49 54 51 45 45 29 51 52 42 52 32 54 53 42 49 32 36 54 52 45 37 36 31 29 54 42 32 35 30 31 30 54 49 49 28 39 29 45 53 27 45 32 35 33 27 34 30 51 32 46 34 52 32 32 31 53 53 53 37 28 41 52 52 25 31 39 32 32 45 49 39 53 52 52 32 23 38 38 37 42 42 31 31 42 31 23 21 43 51 27 30 28 42 31 31 31 51 31 42 51 33 30 31 31 28 31 29 43 18 25 18 37 16 47 42 31 38 31 47 41 25 41 32 46 46 46 25 23 27 31 48 29 29 31 32 30 32 26 30 15 33 13 31 26 31 25 17 30 22 26 38 43 31 39 46 39 32 32 39 27 23 36 29 24 21 31 31 25 7 13 12 22 41 31 31 32 39 30 23 25 19 19 9 9 31 34 38 31 32 21 15 20 26 33 15 32 32 21 29 44 6 7 19 8 41 44 9 25 47 21 18 17 32 18 27 48 31 24 24 25 6 13 22 34 27 12 14 16 27 24 34 34 33 23 10 14 16 18 21 32 29 24 17 12 22 15 23 20 19 15 24 25 18 22 15 15 32 29 6 30 11 8 8 21 21 22 7 14 13 28 26 15 18 25 22 19 18 13 6 5 10 19 16 22 10 15 15 19 15 14 19 10 19 12 6 5 14 30 34 30 17 4 13 10 11 17 5 13 9 27 18 15 11 14 10 7 5 11 13 27 13 47 27 11 9 4 4 4 6 5 2 1 11 4 2 4 8 5 7 13 6 3 2 3 8 8 3 4 1 2 6 4 9 3 3 3 3 3 8 7 8 14 10 7 8 5 24 11 6 5 18 9 5 10 8 5 6 7 9 15 5 12 6 4 5 4 5 2 4 7 6 17 1 2 3 6 10 4 4 2 5 3 2 2 1 2 3 5 12 10 16 6 6 18 6 5 11 4 4 7 16 5 7 6 3 1 3 14 18 5 7 9 5 6 4 5 9 4 4 4 11 28	Open. Hide. 62 44 62 47 62 59 46 62 59 62 34 41 31 28 28 28 28 43 33 43 46 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 59 62 62 62 62 62 62 62 54 62 62 62 62 62 62 59 54 49 54 62 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 59 59 43 54 62 62 62 62 62 62 62 42 54 62 62 59 62 59 51 59 62 62 62 62 62 59 59 56 48 43 54 59 59 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 59 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 58 58 58 58 58 58 58 54 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 49 58 58 58 54 58 58 58 52 58 58 58 58 58 58 58 58 51 58 58 58 58 58 58 58 58 58 58 58 58 58 58 49 30 58 58 58 51 49 58 58 58 58 54 58 49 58 50 58 58 58 58 39 47 58 58 58 58 58 53 58 58 54 58 58 58 51 58 41 40 50 58 49 50 50 58 53 53 53 58 58 58 51 51 49 40 58 42 42 58 50 52 50 52 52 53 53 53 51 51 34 58 58 49 52 51 53 53 52 51 52 53 53 50 53 58 51 51 52 50 32 54 45 40 44 38 38 34 54 42 49 53 54 53 52 49 32 53 54 41 40 51 49 44 50 45 53 40 54 53 38 31 54 47 47 51 29 45 45 47 53 42 34 54 33 36 36 37 42 37 40 41 27 31 53 33 54 47 37 54 39 54 32 45 54 49 33 52 41 32 33 49 34 39 35 42 52 32 46 51 32 53 52 52 45 34 53 53 52 41 32 34 41 36 32 34 31 40 32 49 52 39 45 31 31 31 32 32 41 30 45 42 31 43 33 35 51 51 51 46 22 45 51 46 25 28 27 31 51 41 46 27 31 43 51 35 32 31 32 38 19 33 28 42 32 26 25 31 30 41 30 30 31 31 31 43 32 30 36 36 31 27 30 34 36 46 46 31 31 31 46 46 46 46 46 19 12 31 25 35 46 31 31 27 36 19 19 37 34 33 25 46 27 20 17 31 31 41 29 32 42 34 32 31 39 24 13 31 36 23 19 31 35 38 21 31 36 13 34 25 33 33 22 30 26 37 32 31 48 29 27 31 24 30 21 33 36 16 26 31 17 31 29 16 29 22 32 12 23 29 23 20 31 27 31 26 25 25 25 31 14 16 19 31 24 15 6 17 43 21 16 43 48 48 48 33 28 13 7 5 25 15 16 36 33 22 47 25 28 16 20 20 18 11 19 10 15 13 34 31 29 20 30 10 8 24 27 6 14 5 22 9 22 27 23 22 8 20

Alignment Information

BAC End 1

BAC End 2

seq1: chr16_46088781_46089961
seq2: B6Ng01-316J09.b_48_1234

seq1  GAATTCAAAGCCTTGACCCAAAGGCAGACAGGAGAAGAATGACAAAGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGCCTTGACCCAAAGGCAGACAGGAGAAGAATGACAAAGCCC  50

seq1  ACTGCCACAGAGATTCACTTCATTCAACATGGCTACATCTATTCCAACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCACAGAGATTCACTTCATTCAACATGGCTACATCTATTCCAACAA  100

seq1  GGACACACACTTCGTGTGGGTCAAGCATTCAAACACATGAGTCTGTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACACACTTCGTGTGGGTCAAGCATTCAAACACATGAGTCTGTGGAG  150

seq1  GTATTCCTATTCAAACCACTACGAGGTATAAGAGACAAAGAATTAGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCCTATTCAAACCACTACGAGGTATAAGAGACAAAGAATTAGTGAA  200

seq1  TTAGAGTTATGTGAAACCCAGAAAAATAAAGAAGGGAGGCAGTGTAAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGTTATGTGAAACCCAGAAAAATAAAGAAGGGAGGCAGTGTAAGGA  250

seq1  GAAGTGAAGGAGAGACAATTATAAAGACAGCATGCTAGAGAGAAGTCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAAGGAGAGACAATTATAAAGACAGCATGCTAGAGAGAAGTCTGA  300

seq1  AGACAGGGAAGAGAAGTGGCACTTTAAGAAAGTTTCATAACGAATAAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGGAAGAGAAGTGGCACTTTAAGAAAGTTTCATAACGAATAAAGA  350

seq1  AAGAGACCGTGATCACCAGGGTGCCTGAACAAAAGGGGACATTTTTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACCGTGATCACCAGGGTGCCTGAACAAAAGGGGACATTTTTGTAG  400

seq1  ATCCCCAGGCACAATTTTAATGCATTGCCTTTGTTTCATGCCCAACGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCAGGCACAATTTTAATGCATTGCCTTTGTTTCATGCCCAACGACC  450

seq1  AGACATTTATTTGAGAAGTATGTTTTAGATTTTCCTTGCACCATGAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTATTTGAGAAGTATGTTTTAGATTTTCCTTGCACCATGAAAAT  500

seq1  ACTAGTTTCATGGCAAGCCATTGTTCTCTGATATTTTATTAAAAGGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTTCATGGCAAGCCATTGTTCTCTGATATTTTATTAAAAGGCTCA  550

seq1  TCTTCAAATGCTCAGAGATGCTTTGAAAGAAAAAAAAGAAGTGAAAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAATGCTCAGAGATGCTTTGAAAGAAAAAAAAGAAGTGAAAAATA  600

seq1  CTCTAATAGTCCATATGGAGTGAAAGTTTCCTGCATTGCTGAGGCTACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATAGTCCATATGGAGTGAAAGTTTCCTGCATTGCTGAGGCTACAT  650

seq1  CTAAAATATTAACTTAAGAAAAGAATAACATCATCCTGGGAGGGACTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATATTAACTTAAGAAAAGAATAACATCATCCTGGGAGGGACTGTG  700

seq1  ACCTCTGTGCTGGGGCTGTCTGCTAGGAGATGTCATTGAGCTGACTCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTGTGCTGGGGCTGTCTGCTAGGAGATGTCATTGAGCTGACTCCTC  750

seq1  AAGTGCCTCTCTGTGCCTCCCTTCCTTTGGATGAGTTGATTAATCCTCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCCTCTCTGTGCCTCCCTTCCTTTGGATGAGTTGATTAATCCTCAT  800

seq1  TTTCACCTTGACAGGCTTTAGAATCTCACTGGAAACATACTTTGGCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACCTTGACAGGCTTTAGAATCTCACTGGAAACATACTTTGGCTGTA  850

seq1  ACTCCAAGGGTATTTCCAAAAAGGTTTAACTGAAGAGGTAAGACATGTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAAGGGTATTTCCAAAAAGGTTTAACTGAAGAGGTAAGACATGTCC  900

seq1  CGAATATGAATGACAACATCTGGACTAAGGTCCACACTGAATAGCAAGG-  949
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  CGAATATGAATGAC-ACATCTGGACTAAGGTCCACACTGAATAGCAAGGA  949

seq1  AAAGGGAGCTGGGCTAACATCTGTAGCCCCGGCACTCTGGAGGCAGAAGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGAGCTGGGCTAACATCTGTAGCCCCGGCACTCTGGAGGCAGAAGC  999

seq1  AGAA-GGATGTAGAGCTTATGTG-CACTCCTGGCGACACAGT-GGGGCTG  1046
      |||| |||||||||||||||||| |||||||||||||||||| |||||||
seq2  AGAATGGATGTAGAGCTTATGTGCCACTCCTGGCGACACAGTGGGGGCTG  1049

seq1  AAGCCAGCCTGTGCTGTTTGAGACACAAGAGAGAG-AGGGAGAGGGACAA  1095
      |||||||||||||||||||||||| | |||||||| | | ||| | ||||
seq2  AAGCCAGCCTGTGCTGTTTGAGAC-CCAGAGAGAGAATGCAGAAGTACAA  1098

seq1  GTTGAACACCAACATTCAT-CTCTC-TCA-CTGTGGATACAGTGTAGCCA  1142
      | ||| |||||  ||  || ||||| ||| ||||| ||||||| ||| ||
seq2  G-TGACCACCACAATCAATCCTCTCTTCACCTGTGAATACAGT-TAG-CA  1145

seq1  GTGACTTCATACTCATGCCGCC-ATGGTTTTCT---GAGAAAA  1181
      ||||| |||||||||||||||| ||| ||||||   |||||||
seq2  GTGAC-TCATACTCATGCCGCCAATGCTTTTCTCTGGAGAAAA  1187

seq1: chr16_46223711_46224282
seq2: B6Ng01-316J09.g_66_637 (reverse)

seq1  AGGGCACATAAAGGATGTTTAGAATAGTAGATATGGTCTGTATGGTACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCACATAAAGGATGTTTAGAATAGTAGATATGGTCTGTATGGTACCA  50

seq1  ACATTGTGAGTGCATTCCTGTGTTAGTCTATTCAAATGGCTTCATTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTGAGTGCATTCCTGTGTTAGTCTATTCAAATGGCTTCATTAAGT  100

seq1  TATCATAGAAACAAAAACTTATTTCATAGTTCTGGTGGCTGGGAAGTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGAAACAAAAACTTATTTCATAGTTCTGGTGGCTGGGAAGTTCA  150

seq1  AAGTAAGGTGGCAGAAGATTTGAAATCTGGTTGGGGACTACTCTAGCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAGGTGGCAGAAGATTTGAAATCTGGTTGGGGACTACTCTAGCTCC  200

seq1  TAAAAGGCATTTGCCTTGTGTACTCTTATGTGGTCATCTAGACAGGTAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGCATTTGCCTTGTGTACTCTTATGTGGTCATCTAGACAGGTAGC  250

seq1  TCTTAGAGTTTCTTTTACAAGGAATTGGGTTCTATTAATGTAAAGATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAGTTTCTTTTACAAGGAATTGGGTTCTATTAATGTAAAGATAGA  300

seq1  TAGGTAGACAGAGGATTATTATTGATGGGAGAGAGAGAGAGAGAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAGACAGAGGATTATTATTGATGGGAGAGAGAGAGAGAGAGAGAAA  350

seq1  TAAAATGGATTTGCAGTGATAATATACTGACTTAATTAGATAAGAAATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATGGATTTGCAGTGATAATATACTGACTTAATTAGATAAGAAATTG  400

seq1  TGAGGCATGTAAACAGAGGTGTTGTGTAGGTGGGGACACAGAGATATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCATGTAAACAGAGGTGTTGTGTAGGTGGGGACACAGAGATATGAA  450

seq1  AAATCTCTGTAGGTTGTCTATTTTTCTGTGAACCTAAAGTTGCTTTTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCTGTAGGTTGTCTATTTTTCTGTGAACCTAAAGTTGCTTTTGGA  500

seq1  TTAATAAAGAGTTTTGTTCTTTCATGCTTAGTACAAAGAAAACTAAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAAGAGTTTTGTTCTTTCATGCTTAGTACAAAGAAAACTAAGATT  550

seq1  TGAGTACTTTATTAATGAATTC  572
      ||||||||||||||||||||||
seq2  TGAGTACTTTATTAATGAATTC  572

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information