BAC Information

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BAC

Clone NameB6Ng01-317J19
Chromosome16 (Build37)
Map Location 62,445,707 - 62,446,866
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-317J19.bB6Ng01-317J19.g
ACCGA107712GA107713
length1,1511,173
definitionB6Ng01-317J19.b B6Ng01-317J19.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccattaaggtctctttattcaggctcaagcttgggctaccctgac
acagcaggaaggtggagcactgaatccagtgttaagcaaacatttataga
ggcaataagtcggtatctagccagatagacatctgactggggagccatta
gaacctttaacattattgtctggtgcttgaagccaaaccataagcttaac
ttctgcatttttttcttattggtggttatcaggaagtgaagtgctggggt
gggcttgtaacccgggggtgcagatttgttgttgttagcaacctcaagtt
caaccttagggtaggttctctaagatggagtctgacctcaaaagatttgg
tctctcagtgcatccctttttctacttctcatgggcatagtgcccatgag
gacacatggttttgactttctcagcatttgccaatatccatatgacacaa
atagcaaagtggcctttggatttaagatcttctcctgaaaagaaacaagt
ggagattaagcacgtgagagttatcaaatcaaatttcagccaagtagctg
ttcatagagtgtaagcccactccatactggcacacaaagcaaaattattt
ccaaaaaggtgatgtcgggggtgaggatattgcttactggtgaagaactt
agcatatactaggcccagtaatagataacagaagtacaagataaaaataa
caatcatgaattcctgaagcacagtacaaagcccaacaataataagatga
agagtgaaaatagagaagcctttgagtgaatgcatctttttgcatgaatt
atgtacagaaaatggtaatatctaccaaaaagcaaactacaaaaactata
tatatagtatcaactttagcatgattacatctaaagactgtctacacagt
ggaacacagtgcccaaatcaatttcctctggctccagaaagctgacaagg
aatggataaattgaaggagtagcagttcctagttatggctgtcagcccca
ctgcatctgcacgttatcattctgtggaatgagtccctgtgagggtcaga
cgcaccacctgggtgtatctccatggtgcagagattgtatcggtagggtc
gaactcacatgtcttcaattgcctctgagacacagttactaaatacttta
a

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatcccttaatcatcagggaaatgcaaatcaaaagaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgtggatgtggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactctggaaatcagtctggcagttcctc
agaaaattggacatagtactaccagaggatccagcaatacctctcctggg
catatatccagaagatgccccaactggtaagaaggacacattctccacta
tcttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaacagaggaatggatacagaaaatatggtacatctacacaat
ggagtactactcagctattagaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtatggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcttccaaatgctgacaccattgcatacactagcaagattttactgaaa
ggacccagatgtagctgtatcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggttcacaggctcccaa
tggagagctagagaagtaccaaggagctaagatcttcaccctatagtgaa
cacattatgactaccagtaccctgagctcttgactctagctgcatatgta
tcaaagattgtctagtcgtcatcactgagagagcccatgaaccgcgacct
tggttccggtacaggaacgcagcaagtgattggatgtatcgcacaccact
gctgtcatctacgatttgcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62445707_62446866
seq2: B6Ng01-317J19.b_49_1199

seq1  GAATTCCATTAAGGTCTCTTTATTCAGGCTCAAGCTTGGGCTACCCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAAGGTCTCTTTATTCAGGCTCAAGCTTGGGCTACCCTGAC  50

seq1  ACAGCAGGAAGGTGGAGCACTGAATCCAGTGTTAAGCAAACATTTATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGAAGGTGGAGCACTGAATCCAGTGTTAAGCAAACATTTATAGA  100

seq1  GGCAATAAGTCGGTATCTAGCCAGATAGACATCTGACTGGGGAGCCATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATAAGTCGGTATCTAGCCAGATAGACATCTGACTGGGGAGCCATTA  150

seq1  GAACCTTTAACATTATTGTCTGGTGCTTGAAGCCAAACCATAAGCTTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTTTAACATTATTGTCTGGTGCTTGAAGCCAAACCATAAGCTTAAC  200

seq1  TTCTGCATTTTTTTCTTATTGGTGGTTATCAGGAAGTGAAGTGCTGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCATTTTTTTCTTATTGGTGGTTATCAGGAAGTGAAGTGCTGGGGT  250

seq1  GGGCTTGTAACCCGGGGGTGCAGATTTGTTGTTGTTAGCAACCTCAAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTGTAACCCGGGGGTGCAGATTTGTTGTTGTTAGCAACCTCAAGTT  300

seq1  CAACCTTAGGGTAGGTTCTCTAAGATGGAGTCTGACCTCAAAAGATTTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTAGGGTAGGTTCTCTAAGATGGAGTCTGACCTCAAAAGATTTGG  350

seq1  TCTCTCAGTGCATCCCTTTTTCTACTTCTCATGGGCATAGTGCCCATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAGTGCATCCCTTTTTCTACTTCTCATGGGCATAGTGCCCATGAG  400

seq1  GACACATGGTTTTGACTTTCTCAGCATTTGCCAATATCCATATGACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGGTTTTGACTTTCTCAGCATTTGCCAATATCCATATGACACAA  450

seq1  ATAGCAAAGTGGCCTTTGGATTTAAGATCTTCTCCTGAAAAGAAACAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAGTGGCCTTTGGATTTAAGATCTTCTCCTGAAAAGAAACAAGT  500

seq1  GGAGATTAAGCACGTGAGAGTTATCAAATCAAATTTCAGCCAAGTAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTAAGCACGTGAGAGTTATCAAATCAAATTTCAGCCAAGTAGCTG  550

seq1  TTCATAGAGTGTAAGCCCACTCCATACTGGCACACAAAGCAAAATTATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATAGAGTGTAAGCCCACTCCATACTGGCACACAAAGCAAAATTATTT  600

seq1  CCAAAAAGGTGATGTCGGGGGTGAGGATATTGCTTACTGGTGAAGAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAGGTGATGTCGGGGGTGAGGATATTGCTTACTGGTGAAGAACTT  650

seq1  AGCATATACTAGGCCCAGTAATAGATAACAGAAGTACAAGATAAAAATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATATACTAGGCCCAGTAATAGATAACAGAAGTACAAGATAAAAATAA  700

seq1  CAATCATGAATTCCTGAAGCACAGTACAAAGCCCAACAATAATAAGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATGAATTCCTGAAGCACAGTACAAAGCCCAACAATAATAAGATGA  750

seq1  AGAGTGAAAATAGAGAAGCCTTTGAGTGAATGCATCTTTTTGCATGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGAAAATAGAGAAGCCTTTGAGTGAATGCATCTTTTTGCATGAATT  800

seq1  ATGTACAGAAAATGGTAATATCTACCAAAAAGCAAACTACAAAAACTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACAGAAAATGGTAATATCTACCAAAAAGCAAACTACAAAAACTATA  850

seq1  TATATAGTATCAACTTTAGCATGATTACATCTAAAGACTGTCTACACAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGTATCAACTTTAGCATGATTACATCTAAAGACTGTCTACACAGT  900

seq1  GGAACACAGTGCCCAAATCAATTTCCTCTGGCTCCAGAAAGCTGACAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACACAGTGCCCAAATCAATTTCCTCTGGCTCCAGAAAGCTGACAAGG  950

seq1  AATGGATAAA-TGAAGGAGTAGCAGGTTCCTAGTTATGGCTGTCAGCCCC  999
      |||||||||| ||||||||||||| |||||||||||||||||||||||||
seq2  AATGGATAAATTGAAGGAGTAGCA-GTTCCTAGTTATGGCTGTCAGCCCC  999

seq1  ACTGCATCTGCACGTTATCCATCTGTGGGAATGGAGTCCCTGTGAGGGGT  1049
      |||||||||||||||||||  ||||| ||||| |||||||||||| ||||
seq2  ACTGCATCTGCACGTTATCATTCTGT-GGAAT-GAGTCCCTGTGA-GGGT  1046

seq1  CAGACGGCACACCTGGGTGTATCTCCCATGTGCAAGGAAGATGTATCGGT  1099
      ||||||   |||||||||||||||||   |||||  ||   |||||||||
seq2  CAGACGCACCACCTGGGTGTATCTCCATGGTGCA--GAGATTGTATCGGT  1094

seq1  AAGGGGTCGGACATCACATGTCTTC-ATTG-CTCTGGAGCACAGTTTACT  1147
      |  |||||| || |||||||||||| |||| |||||   ||||| |||||
seq2  A--GGGTCGAAC-TCACATGTCTTCAATTGCCTCTGAGACACAG-TTACT  1140

seq1  AAAATAACTTTAA  1160
      |||   |||||||
seq2  AAA--TACTTTAA  1151


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