BAC Information

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BAC

Clone NameB6Ng01-318M19
Chromosome16 (Build37)
Map Location 46,312,026 - 46,458,550
singlet/doubletdoublet
Overlap genePvrl3
Upstream geneCd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110
Downstream geneLOC628757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318M19.bB6Ng01-318M19.g
ACCGA108595GA108596
length9431,076
definitionB6Ng01-318M19.b B6Ng01-318M19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,312,026 - 46,312,921)(46,457,466 - 46,458,550)
sequence
gaattcatatagcagcagtcctgattctgatggcttatctcttctctcag
tgtaaaacaatgccaatcaacatcattttagggacatcattttaagaaga
gctaaggtagaaaagtgggaatacgtggttttatgttaaggctgtgcaaa
ggtttagtgtgcaccatcttagatgcctaagttataatgagacactaatg
cttttataattaaactaaacaattttatgaggtagaaacaaaatcactgc
ccaggtttatgtaactttcccttaagtgatatagagagccaattcaacag
tccaagtggaaggctgaatgggcgctaaacagagacacaggatgataaag
ataattccttgctagctttccaaattgctaacaataagaaaatcagttga
atccaatcgcgcggaacctgagactgcggtatatagggaaacagactacc
cgggcatgacctggggcacaagccccttccgctccactcgagccccgggc
taccttgccagcggagtcgcctgacacccgccaagggcccacacaggatt
ccacaagggatcctaagacctctagtgagtggaacacaacttctgccagg
agtccagttcgaacaccagatatctgggtaccttccctgcaagaagagag
ctttcctgcagagaatactctacccactgaaactaaggagagcgctaccc
tcccaggtctgcttatagaggctaacagagtcacctgaagaacaagctct
taacagagacaactataatagctagattcagagattaccagatggcgaaa
ggcaaatgtaagaatcctactaacagaaatcaagaccactcaccatcatc
agaacgcagcactcccaccccacctagtcctggacaccccaacacaaccg
aaaatctagacccagatttaaaaacatttctcatgatgatgat
gaattccattcatgtgttcatcaatgtattcattgtcttagtcaagtact
gttgactgaatattgccttcccgagtgattatgctgaaagtaaagaaaat
aattaccattcttctaaagcttatctattgagttaatgttttctcatcgt
atagtgtatttattccaaaggaggataattgtatcttgcatgcattgatt
ttatagatgctcctgaagtttcagtaacaggatatgatggaaattggttc
gtgggaagaaaaggtgttaacctcaagtgtaatgctgatgcaaaccctcc
acccttcaagtccgtgtggagcaggtaatacagagttaaacccagagcac
ccaactgtttaaaagagaaatggattcttaaaagcagtaaggctgatttt
actcagtgcataattagattcatggctaaagaaattaaacaaatgagaag
tttctcaatatttttctatcttattgtctcttaccatcctgtcctggtat
ttctgtcccaggatactggcagcagtgttagagattttagcttttttttt
tccttttccctataattactgtcgtggatctgatgattactagcttgtgg
tgaggaagcttccacttcagtttcagcttggtttctttctctgtatcctc
tatttagggtgtgtgatatcttcagcaatagagtcgtatctaattctgtt
ggtcattcttttttgttttgttttgtttttttcgagacaaagtttctctg
tgtagccctagctgtcctggaactcactctgtagaccaggctggccttga
actcagaaatccgcctgcctctgcctcccgagtactgggattaaaggcgt
gggccaccactgcctggctctgttgggcattcttgagaaatggcaagagg
ctttatcgttaggtctctaggcttagctaataaagaggcatctcatatct
agtgctagatttttgtttaataatccatgctttttagagcagcactactg
agatctgcagatgtctctgtagctcctcacttcttgaatttggctacatg
agtagtggagtctccaatggctttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_46312026_46312921
seq2: B6Ng01-318M19.b_47_942

seq1  GAATTCATATAGCAGCAGTCCTGATTCTGATGGCTTATCTCTTCTCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATAGCAGCAGTCCTGATTCTGATGGCTTATCTCTTCTCTCAG  50

seq1  TGTAAAACAATGCCAATCAACATCATTTTAGGGACATCATTTTAAGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACAATGCCAATCAACATCATTTTAGGGACATCATTTTAAGAAGA  100

seq1  GCTAAGGTAGAAAAGTGGGAATACGTGGTTTTATGTTAAGGCTGTGCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGTAGAAAAGTGGGAATACGTGGTTTTATGTTAAGGCTGTGCAAA  150

seq1  GGTTTAGTGTGCACCATCTTAGATGCCTAAGTTATAATGAGACACTAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAGTGTGCACCATCTTAGATGCCTAAGTTATAATGAGACACTAATG  200

seq1  CTTTTATAATTAAACTAAACAATTTTATGAGGTAGAAACAAAATCACTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATAATTAAACTAAACAATTTTATGAGGTAGAAACAAAATCACTGC  250

seq1  CCAGGTTTATGTAACTTTCCCTTAAGTGATATAGAGAGCCAATTCAACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTTTATGTAACTTTCCCTTAAGTGATATAGAGAGCCAATTCAACAG  300

seq1  TCCAAGTGGAAGGCTGAATGGGCGCTAAACAGAGACACAGGATGATAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTGGAAGGCTGAATGGGCGCTAAACAGAGACACAGGATGATAAAG  350

seq1  ATAATTCCTTGCTAGCTTTCCAAATTGCTAACAATAAGAAAATCAGTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTCCTTGCTAGCTTTCCAAATTGCTAACAATAAGAAAATCAGTTGA  400

seq1  ATCCAATCGCGCGGAACCTGAGACTGCGGTATATAGGGAAACAGACTACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAATCGCGCGGAACCTGAGACTGCGGTATATAGGGAAACAGACTACC  450

seq1  CGGGCATGACCTGGGGCACAAGCCCCTTCCGCTCCACTCGAGCCCCGGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCATGACCTGGGGCACAAGCCCCTTCCGCTCCACTCGAGCCCCGGGC  500

seq1  TACCTTGCCAGCGGAGTCGCCTGACACCCGCCAAGGGCCCACACAGGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGCCAGCGGAGTCGCCTGACACCCGCCAAGGGCCCACACAGGATT  550

seq1  CCACAAGGGATCCTAAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGGATCCTAAGACCTCTAGTGAGTGGAACACAACTTCTGCCAGG  600

seq1  AGTCCAGTTCGAACACCAGATATCTGGGTACCTTCCCTGCAAGAAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGTTCGAACACCAGATATCTGGGTACCTTCCCTGCAAGAAGAGAG  650

seq1  CTTTCCTGCAGAGAATACTCTACCCACTGAAACTAAGGAGAGCGCTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGCAGAGAATACTCTACCCACTGAAACTAAGGAGAGCGCTACCC  700

seq1  TCCCAGGTCTGCTTATAGAGGCTAACAGAGTCACCTGAAGAACAAGCTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGTCTGCTTATAGAGGCTAACAGAGTCACCTGAAGAACAAGCTCT  750

seq1  TAACAGAGACAACTATAATAGCTAGATTCAGAGATTACCAGATGGCGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGACAACTATAATAGCTAGATTCAGAGATTACCAGATGGCGAAA  800

seq1  GGCAAATGTAAGAATCCTACTAACAGAAATCAAGACCACTCACCATCATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAATGTAAGAATCCTACTAACAGAAATCAAGACCACTCACCATCATC  850

seq1  AGAACGCAGCACTCCCACCCCACCTAGTCCTGGACACCCCAACACA  896
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACGCAGCACTCCCACCCCACCTAGTCCTGGACACCCCAACACA  896

seq1: chr16_46457466_46458550
seq2: B6Ng01-318M19.g_68_1143 (reverse)

seq1  GGAAGGCCATTTGGAGACT-CACTAACTTCCATGTAAGCCAAAATCAAG-  48
      |||| |||| ||||||||| |||| |||  ||||| ||||||| ||||| 
seq2  GGAAAGCCA-TTGGAGACTCCACT-ACT--CATGT-AGCCAAATTCAAGA  45

seq1  AGTGA-GAGCTACAAGAGACATTCTGCAGATCTCAGTTAGTGCTGCTCCT  97
      ||||| ||||||| ||||||| |||||||||||||| |||||||||| ||
seq2  AGTGAGGAGCTAC-AGAGACA-TCTGCAGATCTCAG-TAGTGCTGCT-CT  91

seq1  AAAAAGCCATGGATTATTAAACAAAAATCCTAGCACTAGATATGAGATGC  147
      |||||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  AAAAAG-CATGGATTATTAAACAAAAAT-CTAGCACTAGATATGAGATGC  139

seq1  CTCTTTATTAGCTAAGCCTAGAGACCCTAACGATAAAGCCTCTTGCCATT  197
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CTCTTTATTAGCTAAGCCTAGAGA-CCTAACGATAAAGCCTCTTGCCATT  188

seq1  TCTCAAGAATGCCCAACAGAGCCAGGCAGTGGTGGCCCACGCCTTTAATC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAGAATGCCCAACAGAGCCAGGCAGTGGTGGCCCACGCCTTTAATC  238

seq1  CCAGTACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACTCGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCC  288

seq1  TGGTCTACAGAGTGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTACAGAGTGAGTTCCAGGACAGCTAGGGCTACACAGAGAAACTTT  338

seq1  GTCTCGAAAAAAACAAAACAAAACAAAAAAGAATGACCAACAGAATTAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCGAAAAAAACAAAACAAAACAAAAAAGAATGACCAACAGAATTAGA  388

seq1  TACGACTCTATTGCTGAAGATATCACACACCCTAAATAGAGGATACAGAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACTCTATTGCTGAAGATATCACACACCCTAAATAGAGGATACAGAG  438

seq1  AAAGAAACCAAGCTGAAACTGAAGTGGAAGCTTCCTCACCACAAGCTAGT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAACCAAGCTGAAACTGAAGTGGAAGCTTCCTCACCACAAGCTAGT  488

seq1  AATCATCAGATCCACGACAGTAATTATAGGGAAAAGGAAAAAAAAAAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCAGATCCACGACAGTAATTATAGGGAAAAGGAAAAAAAAAAGCT  538

seq1  AAAATCTCTAACACTGCTGCCAGTATCCTGGGACAGAAATACCAGGACAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTCTAACACTGCTGCCAGTATCCTGGGACAGAAATACCAGGACAG  588

seq1  GATGGTAAGAGACAATAAGATAGAAAAATATTGAGAAACTTCTCATTTGT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTAAGAGACAATAAGATAGAAAAATATTGAGAAACTTCTCATTTGT  638

seq1  TTAATTTCTTTAGCCATGAATCTAATTATGCACTGAGTAAAATCAGCCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTTTAGCCATGAATCTAATTATGCACTGAGTAAAATCAGCCTT  688

seq1  ACTGCTTTTAAGAATCCATTTCTCTTTTAAACAGTTGGGTGCTCTGGGTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTTTTAAGAATCCATTTCTCTTTTAAACAGTTGGGTGCTCTGGGTT  738

seq1  TAACTCTGTATTACCTGCTCCACACGGACTTGAAGGGTGGAGGGTTTGCA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTGTATTACCTGCTCCACACGGACTTGAAGGGTGGAGGGTTTGCA  788

seq1  TCAGCATTACACTTGAGGTTAACACCTTTTCTTCCCACGAACCAATTTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTACACTTGAGGTTAACACCTTTTCTTCCCACGAACCAATTTCC  838

seq1  ATCATATCCTGTTACTGAAACTTCAGGAGCATCTATAAAATCAATGCATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATCCTGTTACTGAAACTTCAGGAGCATCTATAAAATCAATGCATG  888

seq1  CAAGATACAATTATCCTCCTTTGGAATAAATACACTATACGATGAGAAAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACAATTATCCTCCTTTGGAATAAATACACTATACGATGAGAAAA  938

seq1  CATTAACTCAATAGATAAGCTTTAGAAGAATGGTAATTATTTTCTTTACT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAACTCAATAGATAAGCTTTAGAAGAATGGTAATTATTTTCTTTACT  988

seq1  TTCAGCATAATCACTCGGGAAGGCAATATTCAGTCAACAGTACTTGACTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATAATCACTCGGGAAGGCAATATTCAGTCAACAGTACTTGACTA  1038

seq1  AGACAATGAATACATTGATGAACACATGAATGGAATTC  1085
      ||||||||||||||||||||||||||||||||||||||
seq2  AGACAATGAATACATTGATGAACACATGAATGGAATTC  1076