BAC Information

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BAC

Clone NameB6Ng01-322M23
Chromosome16 (Build37)
Map Location 45,030,337 - 45,031,451
singlet/doubletsinglet
Overlap geneEG433021
Upstream geneAtp6v1a, Nat13, Gm608, Sidt1, Ccdc52, Wdr52, Boc, LOC100043731, BC027231, Gtpbp8, Cd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3
Downstream geneCcdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322M23.bB6Ng01-322M23.g
ACCGA111556GA111557
length9481,105
definitionB6Ng01-322M23.b B6Ng01-322M23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatt
ttctggagtccatcttcttgagttctttatatatattggatattagtccc
ctatctgatttgggataggtaaagatcctttctcaatctgatggtggcct
ttttgtcttattgacggtgtctttggccttgcagaagctttgcaacttta
tgaggtcccatttattgattctcgatcttacagcgcaagccattgctgtt
ctattcaggaattttttcccctgtacccatatcttctagacttttcccta
ctttctcctctataagtttcagtgtctctggttttatgtggagttcctta
atccacttagatttgaccttagtacaaggagataggagtggatcaattct
cattcttctacatgataaccgccagttgtgtcagcaccatttgttgaaaa
tgctgtcttttttccactggatggttttagctcccttgtcaaagatcaag
tgaccataggtgtgtgggttcatctctgggtcttcagttctgttccaatg
gtctacttgtctgtcactataccagaaccatgcagtttttatcacaattg
ctctgtagtacagctttaagtcaggtatggtgattccaccagaggttctt
ttatccttgagaagagtttttgctattctaggttttttgttattccagaa
gaatctgccgattgccctttctaattcgttgaagaattgagttggaattt
taatggggattgcattgaatctgtaaattgcttttggcaagagagccatt
tttactatattgtacctgccaattcatgagcatgggagatctttccatct
tctgagatcttctttaacttctttcttcagagacttgaagttcttatcat
acagactttcacttccttagttagagtcacgccaaggtatttatatta
gaattcaaaagggacttgtctccacagcaaccacttccaacaaagtcacc
caggaaggaaaagcacagtaggaacctgtctcacaagtacttgagacact
ttcctgtgtgtgaccctcctatttattaagccatccagggagagaaaatt
gcctcaagcagtggagaggagaactatttgcttcacagaattcacatcta
gttaaaagtcatctggtaaaagctgacatgcttctgaagtgtggtgggga
tttgcagaacaacaaaaaggtcccaagttgttggctgaaaactcagaatt
cagaatagaatcaccctagggacctgctctaacgcaataaattcaatcct
gacctggctcaggccttagacagtgttacttggcagctgtctaggtacga
tcataatgtttactgtgaagcaataaaaccttgcaactgttagagtccaa
ggaagttactagatttgctcatagctttactcaagtatttttaactattt
ctctttttttctaggctggccattttcctatttgatgaacattttaggta
ccctcatgaacatacactattacacatcatcggttgtaaacactgaaaaa
aaaaacaacttaaggatttaaaattctttttttttcaattttttattaga
tattttcttcatttacatttcttttttattatatattttctttatttaca
tttcaaatgctatcctgaaagttccctgtacccctccccgccctgctccc
ctacccacccactcccacttcttggctctggcattcccctgtactgaggc
agataaagtttgcaagaccaaaggggcctctcttcccaatgatggccgac
taggccaccttctgctacatatgcagctagagacaggagctctgggggta
ctggttagttcatattgttgttgacaaatgtgtgctttctcggcagggga
aggggtgagtaaagctctttgaaatgtcagatgggttactcatgccctac
tcatgtcagatgggtactcaatgtctactcattttcttctcttcaagtca
gaagacagcaggaaacccactcaattctgcatctctgcagctgcttgagt
tcgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45030337_45031451
seq2: B6Ng01-322M23.g_65_1169 (reverse)

seq1  AGCG-ACTC-AGCAGGCTGCAGAGATGGCAGAATTGAGTTGGGTTTCCTG  48
      |||| |||| |||| ||||||||||| ||||||||||| |||||||||||
seq2  AGCGAACTCAAGCA-GCTGCAGAGAT-GCAGAATTGAG-TGGGTTTCCTG  47

seq1  CTGTC-TCTGACCTTTGAAGGAGAAGAAAATGAGTAGGACATTGAGTAAC  97
      ||||| ||||||  ||||| |||||||||||||||| |||||||||| ||
seq2  CTGTCTTCTGAC--TTGAA-GAGAAGAAAATGAGTA-GACATTGAGT-AC  92

seq1  CCATCTGACCATGAGTAGGGCATTGAGTAACCCATCTGACCATTTCAAAG  147
      |||||||| ||||||||||||| |||||||||||||||| ||||||||||
seq2  CCATCTGA-CATGAGTAGGGCA-TGAGTAACCCATCTGA-CATTTCAAAG  139

seq1  AGCTTTACTCACCCCTTCCCCTGCCCGAGAAAGCACCACATTTTGTCAAC  197
      ||||||||||||||||||||||| ||||||||||| |||| |||||||||
seq2  AGCTTTACTCACCCCTTCCCCTG-CCGAGAAAGCA-CACA-TTTGTCAAC  186

seq1  AACAATATGAACTAACCAGTACCCCCAGAGCTCCTGTCTCTAGCTGCATA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATGAACTAACCAGTACCCCCAGAGCTCCTGTCTCTAGCTGCATA  236

seq1  TGTAGCAGAAGGTGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCC-TT  296
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTAGCAGAAGGTGGCCTAGTCGGCCATCATTGGGAAGAGAGGCCCCTTT  286

seq1  GGTCTTGCAAACTTTATCTGCCTCAGTACAGGGGAATGCCAGAGCCAAGA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGCAAACTTTATCTGCCTCAGTACAGGGGAATGCCAGAGCCAAGA  336

seq1  AGTGGGAGTGGGTGGGTAGGGGAGCAGGGCGGGGAGGGGTACAGGGAACT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGAGTGGGTGGGTAGGGGAGCAGGGCGGGGAGGGGTACAGGGAACT  386

seq1  TTCAGGATAGCATTTGAAATGTAAATAAAGAAAATATATAATAAAAAAGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGATAGCATTTGAAATGTAAATAAAGAAAATATATAATAAAAAAGA  436

seq1  AATGTAAATGAAGAAAATATCTAATAAAAAATTGAAAAAAAAAGAATTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAAATGAAGAAAATATCTAATAAAAAATTGAAAAAAAAAGAATTTT  486

seq1  AAATCCTTAAGTTGTTTTTTTTTTCAGTGTTTACAACCGATGATGTGTAA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTTAAGTTGTTTTTTTTTTCAGTGTTTACAACCGATGATGTGTAA  536

seq1  TAGTGTATGTTCATGAGGGTACCTAAAATGTTCATCAAATAGGAAAATGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATGTTCATGAGGGTACCTAAAATGTTCATCAAATAGGAAAATGG  586

seq1  CCAGCCTAGAAAAAAAGAGAAATAGTTAAAAATACTTGAGTAAAGCTATG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCTAGAAAAAAAGAGAAATAGTTAAAAATACTTGAGTAAAGCTATG  636

seq1  AGCAAATCTAGTAACTTCCTTGGACTCTAACAGTTGCAAGGTTTTATTGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATCTAGTAACTTCCTTGGACTCTAACAGTTGCAAGGTTTTATTGC  686

seq1  TTCACAGTAAACATTATGATCGTACCTAGACAGCTGCCAAGTAACACTGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTAAACATTATGATCGTACCTAGACAGCTGCCAAGTAACACTGT  736

seq1  CTAAGGCCTGAGCCAGGTCAGGATTGAATTTATTGCGTTAGAGCAGGTCC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCCTGAGCCAGGTCAGGATTGAATTTATTGCGTTAGAGCAGGTCC  786

seq1  CTAGGGTGATTCTATTCTGAATTCTGAGTTTTCAGCCAACAACTTGGGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGGTGATTCTATTCTGAATTCTGAGTTTTCAGCCAACAACTTGGGAC  836

seq1  CTTTTTGTTGTTCTGCAAATCCCCACCACACTTCAGAAGCATGTCAGCTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTTGTTCTGCAAATCCCCACCACACTTCAGAAGCATGTCAGCTT  886

seq1  TTACCAGATGACTTTTAACTAGATGTGAATTCTGTGAAGCAAATAGTTCT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGATGACTTTTAACTAGATGTGAATTCTGTGAAGCAAATAGTTCT  936

seq1  CCTCTCCACTGCTTGAGGCAATTTTCTCTCCCTGGATGGCTTAATAAATA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCACTGCTTGAGGCAATTTTCTCTCCCTGGATGGCTTAATAAATA  986

seq1  GGAGGGTCACACACAGGAAAGTGTCTCAAGTACTTGTGAGACAGGTTCCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGTCACACACAGGAAAGTGTCTCAAGTACTTGTGAGACAGGTTCCT  1036

seq1  ACTGTGCTTTTCCTTCCTGGGTGACTTTGTTGGAAGTGGTTGCTGTGGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCTTTTCCTTCCTGGGTGACTTTGTTGGAAGTGGTTGCTGTGGAG  1086

seq1  ACAAGTCCCTTTTGAATTC  1115
      |||||||||||||||||||
seq2  ACAAGTCCCTTTTGAATTC  1105