BAC Information

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BAC

Clone NameB6Ng01-325C24
Chromosome16 (Build37)
Map Location 35,212,083 - 35,402,953
singlet/doubletdoublet
Overlap geneAdcy5, Sec22a, Pdia5
Upstream geneKalrn, Ropn1, Ccdc14, Mylk, Ptplb
Downstream geneSema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325C24.bB6Ng01-325C24.g
ACCGA113310GA113311
length1,175506
definitionB6Ng01-325C24.b B6Ng01-325C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,212,083 - 35,213,252)(35,402,442 - 35,402,953)
sequence
gaattcttttgcatataagtcctgtgtatccctgatgataccctaggctg
tggcctggcctggcctcccaggtccagtgtggtgcttagagcattgcctc
tgctggcctggccacttcactctccttttctgggcccctcctgctcacac
tgaccacggacagacacaggttctccttcccctctcagggttgcctcact
catctcccttgttctctctcctgctgttcaccaccaagccatctgacaga
atagctctcaactcaggctgagccacacaccctacaagctcatgctgcag
gccgttggctgccagtgttgaccccttaccctgataccacctccttccca
actctctgggtctcttgctctgaccacatctgcttggactcttagttttg
gcttcctgtcctctccttcatctgcaaacatttatttttctcagggttcc
atctcagatctttcctgtggctgatctggcttgtccctgttactgctcgc
tggccccttacccatcccctggggtctcctgtggatttccagctgttgtc
tctgcttcccctgggcccttcaacccctggcctctctagaagcactttct
cggccatcttttttgtgttgccccggtgggagccacagccgctcttgaca
gccgctccctcagttcttcatttccgtggggcatccagatcttgcggtct
tggctcaggaactcctcttcgctcgcccacctcctgctcttctcaacttg
ctggttttggctcctcatcattgctcatctgaacctctgtagcagctctc
cctgattgagcttgcttctttttttgggccacctgccacacagctgtaat
gacattcttccaaaatgcaccacaggtcagagcacattgtttcctggctg
ctgtatccctgagtgctgactttctttgttgtatactgctgctacaacct
taaacctcccgtttctccttcccacccacttttacattccagagtgcaag
ccagacctccaccttcctcaggaagccttccctagatccactcttcatta
tactggcatgtcctttcctttcctggtgtctgtgatgcaccacttcccag
ctactgaaacttgcaatgcatctgttcttcctcaggaccaggttatcttt
aggttccaaggtggcttatgtgctg
tctaattcaggaagccaggctgggagcaggcacagatatggggagtgagg
acccataggacaagattcctacttcaactctgagaccctgccctgcactc
agagaatatgactgttccgtaaaagcctgataagcccttgaggtcctcct
ccatcgtggagtgggggataataaggaccacaaactttttcttttggggg
cctggcacttgcctggtggttgcttctgccctgggagctccaatgatgtc
tgccatagcctggctgcttacctgactgggatagttgtcaatccatctca
tcacacgtctcccctgagctggagcacaaatggctccaggaagacaggag
aatgagcaaagttggtggccttctgtcctaaggctactcaagtgcccatg
ggctctagggggtccttgaagggattctgaggcttcagttaacgccagag
tttgaactgactattccagcacatatggtgtgtgtgtgtgtgtgtgtgtg
tgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_35212083_35213252
seq2: B6Ng01-325C24.b_44_1218

seq1  GAATTCTTTTGCATATAAGTCCTGTGTATCCCTGATGATACCCTAGGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGCATATAAGTCCTGTGTATCCCTGATGATACCCTAGGCTG  50

seq1  TGGCCTGGCCTGGCCTCCCAGGTCCAGTGTGGTGCTTAGAGCATTGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGCCTGGCCTCCCAGGTCCAGTGTGGTGCTTAGAGCATTGCCTC  100

seq1  TGCTGGCCTGGCCACTTCACTCTCCTTTTCTGGGCCCCTCCTGCTCACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCCTGGCCACTTCACTCTCCTTTTCTGGGCCCCTCCTGCTCACAC  150

seq1  TGACCACGGACAGACACAGGTTCTCCTTCCCCTCTCAGGGTTGCCTCACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACGGACAGACACAGGTTCTCCTTCCCCTCTCAGGGTTGCCTCACT  200

seq1  CATCTCCCTTGTTCTCTCTCCTGCTGTTCACCACCAAGCCATCTGACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCCCTTGTTCTCTCTCCTGCTGTTCACCACCAAGCCATCTGACAGA  250

seq1  ATAGCTCTCAACTCAGGCTGAGCCACACACCCTACAAGCTCATGCTGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTCTCAACTCAGGCTGAGCCACACACCCTACAAGCTCATGCTGCAG  300

seq1  GCCGTTGGCTGCCAGTGTTGACCCCTTACCCTGATACCACCTCCTTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTTGGCTGCCAGTGTTGACCCCTTACCCTGATACCACCTCCTTCCCA  350

seq1  ACTCTCTGGGTCTCTTGCTCTGACCACATCTGCTTGGACTCTTAGTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTGGGTCTCTTGCTCTGACCACATCTGCTTGGACTCTTAGTTTTG  400

seq1  GCTTCCTGTCCTCTCCTTCATCTGCAAACATTTATTTTTCTCAGGGTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTGTCCTCTCCTTCATCTGCAAACATTTATTTTTCTCAGGGTTCC  450

seq1  ATCTCAGATCTTTCCTGTGGCTGATCTGGCTTGTCCCTGTTACTGCTCGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGATCTTTCCTGTGGCTGATCTGGCTTGTCCCTGTTACTGCTCGC  500

seq1  TGGCCCCTTACCCATCCCCTGGGGTCTCCTGTGGATTTCCAGCTGTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCCTTACCCATCCCCTGGGGTCTCCTGTGGATTTCCAGCTGTTGTC  550

seq1  TCTGCTTCCCCTGGGCCCTTCAACCCCTGGCCTCTCTAGAAGCACTTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTCCCCTGGGCCCTTCAACCCCTGGCCTCTCTAGAAGCACTTTCT  600

seq1  CGGCCATCTTTTTTGTGTTGCCCCGGTGGGAGCCACAGCCGCTCTTGACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCATCTTTTTTGTGTTGCCCCGGTGGGAGCCACAGCCGCTCTTGACA  650

seq1  GCCGCTCCCTCAGTTCTTCATTTCCGTGGGGCATCCAGATCTTGCGGTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTCCCTCAGTTCTTCATTTCCGTGGGGCATCCAGATCTTGCGGTCT  700

seq1  TGGCTCAGGAACTCCTCTTCGCTCGCCCACCTCCTGCTCTTCTCAACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGGAACTCCTCTTCGCTCGCCCACCTCCTGCTCTTCTCAACTTG  750

seq1  CTGGTTTTGGCTCCTCATCATTGCTCATCTGAACCTCTGTAGCAGCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTTGGCTCCTCATCATTGCTCATCTGAACCTCTGTAGCAGCTCTC  800

seq1  CCTGATTGAGCTTGCTTCTTTTTTTGGGCCACCTGCCACACAGCTGTAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTGAGCTTGCTTCTTTTTTTGGGCCACCTGCCACACAGCTGTAAT  850

seq1  GACATTCTTCCAAAATGCACCACAGGTCAGAGCACATTGTTTCCTGGCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTCTTCCAAAATGCACCACAGGTCAGAGCACATTGTTTCCTGGCTG  900

seq1  CTGTATCCCTGAGTGCTGACTTTCTTTGTTGTATACTGCTGCTACAACCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCCCTGAGTGCTGACTTTCTTTGTTGTATACTGCTGCTACAACCT  950

seq1  TAAACCTCCCGTTTCTCCTTCCCACCCACTTTTACATTCCAGAGTGCAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTCCCGTTTCTCCTTCCCACCCACTTTTACATTCCAGAGTGCAAG  1000

seq1  CCAGACCT-CACCTCCTCCAGGAAGCC-TCCCTAGAT-CACTC-TCATTA  1046
      |||||||| ||||| |  ||||||||| ||||||||| ||||| ||||||
seq2  CCAGACCTCCACCTTCCTCAGGAAGCCTTCCCTAGATCCACTCTTCATTA  1050

seq1  TACAGGGCATGTCCTTTCCTTTCCTGGTGTCCTGTGATTGCA-CAC-TCC  1094
      |||  ||||||||||||||||||||||||| |||||| |||| ||| |||
seq2  TAC-TGGCATGTCCTTTCCTTTCCTGGTGT-CTGTGA-TGCACCACTTCC  1097

seq1  CAGCTACTGAA--CTGCCATGCTTCTG-TCTTCCTCCAAGACCAGGTTAT  1141
      |||||||||||   ||| |||| |||| ||||||| || |||||||||||
seq2  CAGCTACTGAAACTTGCAATGCATCTGTTCTTCCT-CAGGACCAGGTTAT  1146

seq1  CTTAAGGTT-CAAGGTGGGCTTATGTGCTG  1170
      ||| ||||| |||||| |||||||||||||
seq2  CTTTAGGTTCCAAGGT-GGCTTATGTGCTG  1175

seq1: chr16_35402442_35402953
seq2: B6Ng01-325C24.g_70_581 (reverse)

seq1  CACACACACACACACACACACACACACACCATATGTGCTGGAATAGTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACCATATGTGCTGGAATAGTCAG  50

seq1  TTCAAACTCTGGCGTTAACTGAAGCCTCAGAATCCCTTCAAGGACCCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTCTGGCGTTAACTGAAGCCTCAGAATCCCTTCAAGGACCCCCT  100

seq1  AGAGCCCATGGGCACTTGAGTAGCCTTAGGACAGAAGGCCACCAACTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCATGGGCACTTGAGTAGCCTTAGGACAGAAGGCCACCAACTTTG  150

seq1  CTCATTCTCCTGTCTTCCTGGAGCCATTTGTGCTCCAGCTCAGGGGAGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTCCTGTCTTCCTGGAGCCATTTGTGCTCCAGCTCAGGGGAGAC  200

seq1  GTGTGATGAGATGGATTGACAACTATCCCAGTCAGGTAAGCAGCCAGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATGAGATGGATTGACAACTATCCCAGTCAGGTAAGCAGCCAGGCT  250

seq1  ATGGCAGACATCATTGGAGCTCCCAGGGCAGAAGCAACCACCAGGCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGACATCATTGGAGCTCCCAGGGCAGAAGCAACCACCAGGCAAGT  300

seq1  GCCAGGCCCCCAAAAGAAAAAGTTTGTGGTCCTTATTATCCCCCACTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCCCCCAAAAGAAAAAGTTTGTGGTCCTTATTATCCCCCACTCCA  350

seq1  CGATGGAGGAGGACCTCAAGGGCTTATCAGGCTTTTACGGAACAGTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGAGGAGGACCTCAAGGGCTTATCAGGCTTTTACGGAACAGTCATA  400

seq1  TTCTCTGAGTGCAGGGCAGGGTCTCAGAGTTGAAGTAGGAATCTTGTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGAGTGCAGGGCAGGGTCTCAGAGTTGAAGTAGGAATCTTGTCCT  450

seq1  ATGGGTCCTCACTCCCCATATCTGTGCCTGCTCCCAGCCTGGCTTCCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTCCTCACTCCCCATATCTGTGCCTGCTCCCAGCCTGGCTTCCTGA  500

seq1  ATTAGAGAATTC  512
      ||||||||||||
seq2  ATTAGAGAATTC  512