BAC Information

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BAC

Clone NameB6Ng01-327F23
Chromosome16 (Build37)
Map Location 36,925,831 - 37,042,491
singlet/doubletdoublet
Overlap geneGolgb1, Hcls1, Fbxo40, LOC100043252, Polq
Upstream geneDtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101
Downstream geneStxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-327F23.bB6Ng01-327F23.g
ACCGA114937GA114938
length1,1471,148
definitionB6Ng01-327F23.b B6Ng01-327F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,925,831 - 36,926,977)(37,041,322 - 37,042,491)
sequence
gaattcctgggagctgcatgagaggaggatgaaggaacagttcctcatgg
ccatctcagataaagatcagcagcttggtcatctgcagagtctcctgagg
gagctgaggtcttcttcccaggctcagattctctccacacagtaccagcg
acaggtgaggagatccgtacatttctacacagggtgccactacccaaaag
cataagctgcctccagctgcccgtctgctgccatgaggcacgcctcctcc
cagctctttcagggtgatgcaatctcttctagagggagggtttgagtaca
aacactcttaagagaccattttattgacgttttggtcctggcaggcatcc
ccagagacatcagcttccctcgatggatcacaaaagctagtttatgagac
agaacttctcaggactcagctcaatgacagtttaaaggaaattcatcaaa
aggagctaagaattcagcagctaaacagcaaggtacgtgtctcctgctag
actgaaactgaatttcttttttctctttctgaagataagatttggcacag
acaccccgcttcagcataacctgagaatagacgtttatatttcttacaaa
cagaagtttataagagctgggtgtttattccagagcaagaacacagccta
tgttctccttgccctgggtgggtctttaagaatgactcggagaaacccat
acaccaaatatacagaaacttcaccccatcgtctctatgttaggaatgtg
tgggcatctcccgcccatctccctgagccattgtcttcctgctgctcttt
gactgtcagtgttctcaagagctcttccccagacctgccctcttctaaga
aacctagataggtagtgtctgccagaattaaagttcttttagttcagtga
gacttgagtccagaggtggtctttgaggagagttgtgaatctccgaaatg
tatgtttggggtgagggtgcacgtgtcctatcagcagactcgtatgacat
gagccagtaagctgctcagtgtgtgatgtgcttgctcgacaccctggtgg
atccacagaggaaagatggaccaactcctgagagtgtctctgtttctccc
aacacgtgtgcttgtagaatggacatgccttaaacctcatgaagggg
gaattcctcctgcagacctgatgtaacacacgcatctcaatattcactaa
caagaggcaagaggatcaagcattccaggatagtcttgcctacccagtga
ggttctaccaatagataagtgaatagtattgtctttaaatagaacttacc
aggtagacaatatgaaggtcattctctaaaacaaagcctttcattgctct
ttggaggtcagcaaaaatatcaagggtatcagttggagacagtgaagaag
aaagagtagctgatccaagatgtgttgggtgatacacctttcctagagca
gggaatacaggatcgaagggtaaaaaagcaaacactgcccttctctacaa
cacattaaccctctcagctctgtcaatcaatatgcagaatctcatctaac
atgcagaaatttatgagcaaaatgtaaaaagtgaacatgatataaacggt
gagcatttctgcataagagctgtgtttacctcctgtgccgtccccgggct
ctgccacctggatgaactcattttctaacagccacgtcacacaggcatca
atcgctccaagctgagcatcatcttgatttctctgcatcccttgcttccc
ttcctgtatagcagcagccaagaaggtgcaggcggcataagtctgcatat
cttgtgacgtactggccaccccaccaacgattatctgagagaaaatgttt
gaaaagttcggtaatttttatgagatgtgtagagtcccaggacaccaagt
aaacaaaagtgcctttatcctcttaaaatatcttcagtctttgtatagcg
atgctttattttgtcattacgcattacaaatacagatgacaactgtacaa
agtgacattttccttgagagtagatatcatattttcttgtaaacaaaaaa
agaatgcgcctgaactttgggaactagttatatatataaaggagacagtc
atgactcacacctgtgagtatatactttgctcctaaatgccacctcttga
tacatccattcagaatatgggaagggcagaaacacagagctagtatcagt
gtgttccttgctgctcagctgtgagctcatgtctcagtatctagatagga
gtatgcaccacaggtccagctactattagcgtatgtttttaaaatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_36925831_36926977
seq2: B6Ng01-327F23.b_46_1192

seq1  GAATTCCTGGGAGCTGCATGAGAGGAGGATGAAGGAACAGTTCCTCATGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGGAGCTGCATGAGAGGAGGATGAAGGAACAGTTCCTCATGG  50

seq1  CCATCTCAGATAAAGATCAGCAGCTTGGTCATCTGCAGAGTCTCCTGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCAGATAAAGATCAGCAGCTTGGTCATCTGCAGAGTCTCCTGAGG  100

seq1  GAGCTGAGGTCTTCTTCCCAGGCTCAGATTCTCTCCACACAGTACCAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGAGGTCTTCTTCCCAGGCTCAGATTCTCTCCACACAGTACCAGCG  150

seq1  ACAGGTGAGGAGATCCGTACATTTCTACACAGGGTGCCACTACCCAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTGAGGAGATCCGTACATTTCTACACAGGGTGCCACTACCCAAAAG  200

seq1  CATAAGCTGCCTCCAGCTGCCCGTCTGCTGCCATGAGGCACGCCTCCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGCTGCCTCCAGCTGCCCGTCTGCTGCCATGAGGCACGCCTCCTCC  250

seq1  CAGCTCTTTCAGGGTGATGCAATCTCTTCTAGAGGGAGGGTTTGAGTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCTTTCAGGGTGATGCAATCTCTTCTAGAGGGAGGGTTTGAGTACA  300

seq1  AACACTCTTAAGAGACCATTTTATTGACGTTTTGGTCCTGGCAGGCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCTTAAGAGACCATTTTATTGACGTTTTGGTCCTGGCAGGCATCC  350

seq1  CCAGAGACATCAGCTTCCCTCGATGGATCACAAAAGCTAGTTTATGAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGACATCAGCTTCCCTCGATGGATCACAAAAGCTAGTTTATGAGAC  400

seq1  AGAACTTCTCAGGACTCAGCTCAATGACAGTTTAAAGGAAATTCATCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCTCAGGACTCAGCTCAATGACAGTTTAAAGGAAATTCATCAAA  450

seq1  AGGAGCTAAGAATTCAGCAGCTAAACAGCAAGGTACGTGTCTCCTGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTAAGAATTCAGCAGCTAAACAGCAAGGTACGTGTCTCCTGCTAG  500

seq1  ACTGAAACTGAATTTCTTTTTTCTCTTTCTGAAGATAAGATTTGGCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAACTGAATTTCTTTTTTCTCTTTCTGAAGATAAGATTTGGCACAG  550

seq1  ACACCCCGCTTCAGCATAACCTGAGAATAGACGTTTATATTTCTTACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCGCTTCAGCATAACCTGAGAATAGACGTTTATATTTCTTACAAA  600

seq1  CAGAAGTTTATAAGAGCTGGGTGTTTATTCCAGAGCAAGAACACAGCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTTATAAGAGCTGGGTGTTTATTCCAGAGCAAGAACACAGCCTA  650

seq1  TGTTCTCCTTGCCCTGGGTGGGTCTTTAAGAATGACTCGGAGAAACCCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTCCTTGCCCTGGGTGGGTCTTTAAGAATGACTCGGAGAAACCCAT  700

seq1  ACACCAAATATACAGAAACTTCACCCCATCGTCTCTATGTTAGGAATGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAATATACAGAAACTTCACCCCATCGTCTCTATGTTAGGAATGTG  750

seq1  TGGGCATCTCCCGCCCATCTCCCTGAGCCATTGTCTTCCTGCTGCTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATCTCCCGCCCATCTCCCTGAGCCATTGTCTTCCTGCTGCTCTTT  800

seq1  GACTGTCAGTGTTCTCAAGAGCTCTTCCCCAGACCTGCCCTCTTCTAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTCAGTGTTCTCAAGAGCTCTTCCCCAGACCTGCCCTCTTCTAAGA  850

seq1  AACCTAGATAGGTAGTGTCTGCCAGAATTAAAGTTCTTTTAGTTCAGTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTAGATAGGTAGTGTCTGCCAGAATTAAAGTTCTTTTAGTTCAGTGA  900

seq1  GACTTGAGTCCAGAGGTGGTCTTTGAGGAGAGTTGTGAATCTCCGAAATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGAGTCCAGAGGTGGTCTTTGAGGAGAGTTGTGAATCTCCGAAATG  950

seq1  TATGTTTGGGGTGAGGGGTGCACGTGTCCTATCAGCAGAACTCGTATGAC  1000
      |||||||||||||| ||||||||||||||||||||||| |||||||||||
seq2  TATGTTTGGGGTGA-GGGTGCACGTGTCCTATCAGCAG-ACTCGTATGAC  998

seq1  ATGAGCCAGTAAGGCTGCTCAGTGTGTGAATGTGCTTGCTCGACACCCTG  1050
      |||||||||||| ||||||||||||||| |||||||||||||||||||||
seq2  ATGAGCCAGTAA-GCTGCTCAGTGTGTG-ATGTGCTTGCTCGACACCCTG  1046

seq1  GT-GATCCACAGAGGAAAGATGGAACCAACTCCTGAGAGTTGTTCTCTG-  1098
      || |||||||||||||||||||| ||||||||||||||||   |||||| 
seq2  GTGGATCCACAGAGGAAAGATGG-ACCAACTCCTGAGAGT--GTCTCTGT  1093

seq1  TTCTCC--ACACGTGTGC-TGTAGAATGAACATGCCT--ACACTCATGAA  1143
      ||||||  |||||||||| ||||||||| ||||||||  |  ||||||||
seq2  TTCTCCCAACACGTGTGCTTGTAGAATGGACATGCCTTAAACCTCATGAA  1143

seq1  GGGG  1147
      ||||
seq2  GGGG  1147

seq1: chr16_37041322_37042491
seq2: B6Ng01-327F23.g_65_1212 (reverse)

seq1  TATATTTAAAAAAAAAAAAAAGCTTATAGTAGGGCTGGACCTGTGGTGCA  50
      |||||||    ||||| | | ||| ||||||  |||||||||||||||||
seq2  TATATTT---TAAAAACATACGCTAATAGTA--GCTGGACCTGTGGTGCA  45

seq1  TACTCCTTATCCTAGGATACTGGAGACATGAGCTTCACAAGGCTGAGGCC  100
      |||||| ||| ||| |||||| ||||||||||| |||||  ||||||  |
seq2  TACTCC-TAT-CTA-GATACT-GAGACATGAGC-TCACA--GCTGAG--C  86

seq1  AGCCAAGGGAACACACTGAATACTAGCTTCCTGTGTTTCTGCCCTTCCCA  150
      |||  | ||||||||||| |||||||||  ||||||||||||||||||||
seq2  AGC--AAGGAACACACTG-ATACTAGCT--CTGTGTTTCTGCCCTTCCCA  131

seq1  TCCTTCTGAATGGGATGTATTCAAGA-GTGGCATTTAGGAGCAAAGTATT  199
      |  |||||||| ||||||| |||||| ||||||||||||||||||||| |
seq2  T-ATTCTGAAT-GGATGTA-TCAAGAGGTGGCATTTAGGAGCAAAGTA-T  177

seq1  ATACTCACAGGTGTGAGTCATGACTGTCTCCTTTATATATATAACTAGTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCACAGGTGTGAGTCATGACTGTCTCCTTTATATATATAACTAGTT  227

seq1  CCCAAAGTTCAGGCGCATTCTTTTTTTGTTTACAAGAAAATATGATATCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGTTCAGGCGCATTCTTTTTTTGTTTACAAGAAAATATGATATCT  277

seq1  ACTCTCAAGGAAAATGTCACTTTGTACAGTTGTCATCTGTATTTGTAATG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCAAGGAAAATGTCACTTTGTACAGTTGTCATCTGTATTTGTAATG  327

seq1  CGTAATGACAAAATAAAGCATCGCTATACAAAGACTGAAGATATTTTAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATGACAAAATAAAGCATCGCTATACAAAGACTGAAGATATTTTAAG  377

seq1  AGGATAAAGGCACTTTTGTTTACTTGGTGTCCTGGGACTCTACACATCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAAAGGCACTTTTGTTTACTTGGTGTCCTGGGACTCTACACATCTC  427

seq1  ATAAAAATTACCGAACTTTTCAAACATTTTCTCTCAGATAATCGTTGGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATTACCGAACTTTTCAAACATTTTCTCTCAGATAATCGTTGGTG  477

seq1  GGGTGGCCAGTACGTCACAAGATATGCAGACTTATGCCGCCTGCACCTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCCAGTACGTCACAAGATATGCAGACTTATGCCGCCTGCACCTTC  527

seq1  TTGGCTGCTGCTATACAGGAAGGGAAGCAAGGGATGCAGAGAAATCAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTGCTGCTATACAGGAAGGGAAGCAAGGGATGCAGAGAAATCAAGA  577

seq1  TGATGCTCAGCTTGGAGCGATTGATGCCTGTGTGACGTGGCTGTTAGAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCTCAGCTTGGAGCGATTGATGCCTGTGTGACGTGGCTGTTAGAAA  627

seq1  ATGAGTTCATCCAGGTGGCAGAGCCCGGGGACGGCACAGGAGGTAAACAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTCATCCAGGTGGCAGAGCCCGGGGACGGCACAGGAGGTAAACAC  677

seq1  AGCTCTTATGCAGAAATGCTCACCGTTTATATCATGTTCACTTTTTACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTATGCAGAAATGCTCACCGTTTATATCATGTTCACTTTTTACAT  727

seq1  TTTGCTCATAAATTTCTGCATGTTAGATGAGATTCTGCATATTGATTGAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCATAAATTTCTGCATGTTAGATGAGATTCTGCATATTGATTGAC  777

seq1  AGAGCTGAGAGGGTTAATGTGTTGTAGAGAAGGGCAGTGTTTGCTTTTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGAGAGGGTTAATGTGTTGTAGAGAAGGGCAGTGTTTGCTTTTTT  827

seq1  ACCCTTCGATCCTGTATTCCCTGCTCTAGGAAAGGTGTATCACCCAACAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTCGATCCTGTATTCCCTGCTCTAGGAAAGGTGTATCACCCAACAC  877

seq1  ATCTTGGATCAGCTACTCTTTCTTCTTCACTGTCTCCAACTGATACCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGGATCAGCTACTCTTTCTTCTTCACTGTCTCCAACTGATACCCTT  927

seq1  GATATTTTTGCTGACCTCCAAAGAGCAATGAAAGGCTTTGTTTTAGAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTTTGCTGACCTCCAAAGAGCAATGAAAGGCTTTGTTTTAGAGAA  977

seq1  TGACCTTCATATTGTCTACCTGGTAAGTTCTATTTAAAGACAATACTATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCATATTGTCTACCTGGTAAGTTCTATTTAAAGACAATACTATT  1027

seq1  CACTTATCTATTGGTAGAACCTCACTGGGTAGGCAAGACTATCCTGGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATCTATTGGTAGAACCTCACTGGGTAGGCAAGACTATCCTGGAAT  1077

seq1  GCTTGATCCTCTTGCCTCTTGTTAGTGAATATTGAGATGCGTGTGTTACA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGATCCTCTTGCCTCTTGTTAGTGAATATTGAGATGCGTGTGTTACA  1127

seq1  TCAGGTCTGCAGGAGGAATTC  1170
      |||||||||||||||||||||
seq2  TCAGGTCTGCAGGAGGAATTC  1148