MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-328F04
Chromosome	16 (Build37)
Map Location	9,929,613 - 10,082,008
singlet/doublet	doublet
Overlap gene	Grin2a, LOC665291, LOC100042534
Upstream gene	none
Downstream gene	4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11
Link	Open Mouse BAC browser

Click to get alignment info.

name	Grin2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14811 MGI:95820
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665291 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665291
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 20 Proteins pseudo : _no_value

name	LOC100042534 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042534
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	4930517K11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68172 MGI:1915422
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Atf7ip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75329 MGI:1922579
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 14 ESTs, 1 Protein

name	Emp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:13731 MGI:1098726
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tekt5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70426 MGI:1917676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 18 ESTs, 7 Proteins

name	Nubp1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26425 MGI:1347073
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC068110 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:383103 MGI:3665441
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ciita (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12265 MGI:108445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC669998 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:669998
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs

name	Dexi (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:58239 MGI:1926236
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4932416N17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74374 MGI:1921624
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Socs1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:12703 MGI:1354910
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tnp2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21959 MGI:98785
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prm3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19120 MGI:106601
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prm2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19119 MGI:97766
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Prm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19118 MGI:97765
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	A630055G03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:223970 MGI:2685383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Litaf (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56722 MGI:1929512
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100043147 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043147
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	LOC100042597 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042597
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Snn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20621 MGI:1276549
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Txndc11 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:106200 MGI:1923620
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Grin2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41680704 GeneID:14811 MGI:95820
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : glutamate receptor, ionotropic, NMDA2A (epsilon 1) transcript_id : NM_008170.2

name	4930517K11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141803088 GeneID:68172 MGI:1915422
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930517K11 gene transcript_id : NM_026594.2

name	Atf7ip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94400043 GeneID:75329 MGI:1922579
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 14 ESTs, 1 Protein product : activating transcription factor 7 interacting protein 2, transcript variant 1 transcript_id : XM_148109.5

name	Emp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:111154058 GeneID:13731 MGI:1098726
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : epithelial membrane protein 2 transcript_id : NM_007929.2

name	Tekt5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94400059 GeneID:70426 MGI:1917676
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 18 ESTs, 7 Proteins product : tektin 5 transcript_id : XM_358761.3

name	Nubp1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754905 GeneID:26425 MGI:1347073
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nucleotide binding protein 1 transcript_id : NM_011955.1

name	BC068110 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701471 GeneID:383103 MGI:3665441
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC068110 transcript_id : NM_001013778.1

name	Ciita (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131183 GeneID:12265 MGI:108445
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : class II transactivator transcript_id : NM_007575.2

name	LOC669998 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149267318 GeneID:669998
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 4 ESTs product : hypothetical protein LOC669998 transcript_id : XM_001480173.1

name	Dexi (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109809749 GeneID:58239 MGI:1926236
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dexamethasone-induced transcript transcript_id : NM_021428.4

name	4932416N17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130442 GeneID:74374 MGI:1921624
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932416N17 gene transcript_id : NM_177562.4

name	Socs1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:87044896 GeneID:12703 MGI:1354910
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : suppressor of cytokine signaling 1 transcript_id : NM_009896.2

name	Tnp2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62461573 GeneID:21959 MGI:98785
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transition protein 2 transcript_id : NM_013694.4

name	Prm3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114326494 GeneID:19120 MGI:106601
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protamine 3 transcript_id : NM_013638.2

name	Prm2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679474 GeneID:19119 MGI:97766
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protamine 2 transcript_id : NM_008933.1

name	Prm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50657349 GeneID:19118 MGI:97765
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protamine 1 transcript_id : NM_013637.4

name	A630055G03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:85701779 GeneID:223970 MGI:2685383
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA A630055G03 gene transcript_id : NM_001033278.1

name	Litaf (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:9910577 GeneID:56722 MGI:1929512
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : LPS-induced TN factor transcript_id : NM_019980.1

name	LOC100043147 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149267322 GeneID:100043147
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100043147 transcript_id : XM_001480214.1

name	Snn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:50233915 GeneID:20621 MGI:1276549
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : stannin transcript_id : NM_009223.2

name	Txndc11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130624 GeneID:106200 MGI:1923620
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin domain containing 11 transcript_id : NM_029582.2

name	Txndc11 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142383937 GeneID:106200 MGI:1923620
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : thioredoxin domain containing 11 transcript_id : NM_134105.2

name	Grin2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:41680705 CCDS:CCDS27943.1 GeneID:14811 MGI:95820
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IDA]; GO:0042734 - presynaptic membrane [Evidence IEP]; GO:0045202 - synapse [Evidence IDA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA]; GO:0005234 - glutamate-gated ion channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0004970 - ionotropic glutamate receptor activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0007626 - locomotory behavior [Evidence TAS]; GO:0048167 - regulation of synaptic plasticity [Evidence IMP]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : GluRepsilon1 product : glutamate receptor, ionotropic, NMDA2A (epsilon 1) protein_id : NP_032196.2

name	4930517K11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13386082 GeneID:68172 MGI:1915422
definition	codon_start : 1 product : ribosomal protein L39-like protein protein_id : NP_080870.1

name	Atf7ip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38079693 GeneID:75329 MGI:1922579
definition	codon_start : 1 product : activating transcription factor 7 interacting protein 2 isoform 1 protein_id : XP_148109.3

name	Emp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:111154059 GeneID:13731 MGI:1098726
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : epithelial membrane protein 2 protein_id : NP_031955.2

name	Tekt5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38080173 GeneID:70426 MGI:1917676
definition	codon_start : 1 product : tektin 5 protein_id : XP_358761.1

name	Nubp1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754906 CCDS:CCDS27948.1 GeneID:26425 MGI:1347073
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0017111 - nucleoside-triphosphatase activity [Evidence IEA] codon_start : 1 product : nucleotide binding protein 1 protein_id : NP_036085.1

name	BC068110 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701472 CCDS:CCDS27949.1 GeneID:383103 MGI:3665441
definition	codon_start : 1 product : hypothetical protein LOC383103 protein_id : NP_001013800.1

name	Ciita (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6671654 CCDS:CCDS27950.1 GeneID:12265 MGI:108445
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence IEA]; GO:0016564 - transcriptional repressor activity [Evidence IMP]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0016481 - negative regulation of transcription [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : class II transactivator protein_id : NP_031601.1

name	LOC669998 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149267319 GeneID:669998
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480223.1

name	Dexi (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19920321 GeneID:58239 MGI:1926236
definition	codon_start : 1 product : dexamethasone-induced protein protein_id : NP_067403.2

name	4932416N17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:61656175 GeneID:74374 MGI:1921624
definition	GO_function : GO:0005529 - sugar binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC74374 protein_id : NP_808230.2

name	Socs1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753424 CCDS:CCDS27952.1 GeneID:12703 MGI:1354910
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0019210 - kinase inhibitor activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence IDA] [Evidence IMP]; GO:0045444 - fat cell differentiation [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0007259 - JAK-STAT cascade [Evidence IDA]; GO:0046627 - negative regulation of insulin receptor signaling pathway [Evidence IDA]; GO:0046426 - negative regulation of JAK-STAT cascade [Evidence IMP]; GO:0009968 - negative regulation of signal transduction [Evidence IEA]; GO:0042518 - negative regulation of tyrosine phosphorylation of Stat3 protein [Evidence IDA]; GO:0001558 - regulation of cell growth [Evidence IEA]; GO:0001932 - regulation of protein amino acid phosphorylation [Evidence IDA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 note : cytokine inducible SH2-containing protein 7; cytokine inducible SH2-containing protein 1; JAK-binding protein; JAK2-binding protein; STAT-induced STAT inhibitor 1 product : suppressor of cytokine signaling 1 protein_id : NP_034026.1

name	Tnp2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981239 CCDS:CCDS27953.1 GeneID:21959 MGI:98785
definition	GO_component : GO:0001673 - male germ cell nucleus [Evidence TAS] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007340 - acrosome reaction [Evidence IMP]; GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007341 - penetration of zona pellucida [Evidence IMP]; GO:0007283 - spermatogenesis [Evidence IMP] codon_start : 1 note : transition protein 2 (alt.) product : transition protein 2 protein_id : NP_038722.3

name	Prm3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:114326495 CCDS:CCDS27954.1 GeneID:19120 MGI:106601
definition	codon_start : 1 product : protamine 3 protein_id : NP_038666.2

name	Prm2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679475 CCDS:CCDS27955.1 GeneID:19119 MGI:97766
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence TAS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0030261 - chromosome condensation [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0006997 - nuclear organization and biogenesis [Evidence IMP]; GO:0007286 - spermatid development [Evidence IMP] codon_start : 1 product : protamine 2 protein_id : NP_032959.1

name	Prm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305409 CCDS:CCDS27956.1 GeneID:19118 MGI:97765
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence TAS] [Evidence IDA] GO_function : GO:0003677 - DNA binding [Evidence TAS] GO_process : GO:0030154 - cell differentiation [Evidence IEA]; GO:0030261 - chromosome condensation [Evidence TAS]; GO:0007275 - development [Evidence IEA]; GO:0006997 - nuclear organization and biogenesis [Evidence IMP]; GO:0007286 - spermatid development [Evidence IMP] codon_start : 1 product : protamine 1 protein_id : NP_038665.1

name	A630055G03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701780 GeneID:223970 MGI:2685383
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC223970 protein_id : NP_001028450.1

name	Litaf (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9910578 CCDS:CCDS27958.1 GeneID:56722 MGI:1929512
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0008150 - biological_process [Evidence ND]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : LPS-induced TNF-alpha factor; Nedd4 WW domain-binding protein 3 product : LPS-induced TN factor protein_id : NP_064364.1

name	LOC100043147 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149267323 GeneID:100043147
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480264.1

name	Snn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678051 GeneID:20621 MGI:1276549
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : stannin protein_id : NP_033249.1

name	Txndc11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28077061 CCDS:CCDS27960.1 GeneID:106200 MGI:1923620
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; EF-hand binding protein 1 product : thioredoxin domain containing 11 isoform 1 protein_id : NP_083858.1

name	Txndc11 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527336 GeneID:106200 MGI:1923620
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0009055 - electron carrier activity [Evidence IEA]; GO:0015035 - protein disulfide oxidoreductase activity [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 2; EF-hand binding protein 1 product : thioredoxin domain containing 11 isoform 2 protein_id : NP_598866.1

name	LOC665291 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665291
definition	number : 1 pseudo : _no_value

name	LOC665291 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665291
definition	number : 2 pseudo : _no_value

name	LOC665291 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665291
definition	number : 3 pseudo : _no_value

name	LOC665291 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665291
definition	number : 4 pseudo : _no_value

name	LOC100042534 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042534
definition	number : 1 pseudo : _no_value

name	LOC100042597 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042597
definition	number : 2 pseudo : _no_value

name	LOC100042597 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042597
definition	number : 1 pseudo : _no_value

clone name	MSMg01-376O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098O20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-409A08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-156J21
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-493P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-542A23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157L02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415D16
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-179M12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-363J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-280B23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203G12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-498E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-086J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375A03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-424P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-058D02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-291A11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-159D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117E16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-205N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-389C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-279J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-078A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161L01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-461E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322K04
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-419A12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-182O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-378G22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-275P10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-377O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482M06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381K04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-349M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-215P21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-404O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-216K03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-138D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-443D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-425C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402G24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-295C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-304N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-514M13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088P03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138C14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-144J01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-137A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-170G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267C20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267D19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369C20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-124P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-465F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437P24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-275A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-499N04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489D19
singlet/doublet	doublet
plural/unique	plural

clone name	B6Ng01-323F19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-181E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-308P17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-280O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110L05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249L20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-272N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261F22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-146M16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049B10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340E23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096L21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-129O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-345F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-053I16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-191C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024D22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-288D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-103P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-041B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-336M06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-337F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-255G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-297K04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-339A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286J04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-342G16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215H07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-123B21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-302A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073A24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063K03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-121G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-027F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-303K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-328J12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-151B15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035F10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-212P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213B15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-125P01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-139M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-278A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-158C11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261A21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-328N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-100N13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147F13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097A14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-220M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-037O14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-014G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074O01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226H05
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-328F04.b	B6Ng01-328F04.g
ACC	GA115621	GA115622
length	1,237	1,104
definition	B6Ng01-328F04.b	B6Ng01-328F04.g
singlet/doublet	doublet	doublet
BLAST hit	unique	unique
Map location.	(10,080,788 - 10,082,008)	(9,929,613 - 9,930,727)
sequence	gaattcaggaggaggagactaatagggtcaaaagcttaaggtcagcctta gctacacagtgagattgaggccagcatggtgtgcttaagactgtctgaaa aataaaataaaataaaataaaataaaataaaataaaataaaataaaatca agctgggaaaagttctctttgcccgggggagtcattgtgggccatgcctg ccatccgatgtcagaggcagcggggctgaggagaggcaaggctgtgtgct actgcctgctacacctgagggactctcttcagagatctctgctcaggtga aactgagatccctgactttgccacagaaaagcgtttcaggatgagctggt gtgaagcagagccggaatttatcaggaagagttttgagtacaggttgaag caagaagctcgtcagagcagcgcaggggaaagagtccaggaagttgggcg tgggtgcgcgcttctccagagtcttcacagcatacgggcgctttagtggc tccagaggctttgcttgataaactggagcctagcgtggtccagaggagct tgcagacggttatgtggctcaggaggtcactggggctttggctgtaagtg gggcttcttgtgagattcctagaaagtttcaggtttacagcattcctaga aagtttcaggtttacagctgggaaaggacaaagctatgtgtggtcctgta cactcaggccgttgagcgtagaccattgctattttaacattgtatctgaa caactcaggtaaaagaaatactgttcctataaagggaccatctgctgcca atggtagttatgtttgcattcattattctcaggtggcaaaaagcttcaaa gcttcaaccagatgccaggacgaggaacttttttctctccctacactacc ccctctcccagttttctttgtctctctagctggcttcattaagatgcgcg gaagttcaaggtcatcttcagctacattaacaaactcaagagcagtctgg gcttcataaaactctatctttaaaaggtagaaaaacagtctcgggtcatt aggatggcttatggagtaaggaagtttgctggcagcttgaataactttcg gttcggagtcccaggatgcaacaggtgcaaggagaggcttgtggattcag ggcaaaggcgtctttcggacctcttaggtctcgttgtgggtataaataca caagggtctcaggcttccaataatgttaacttaaaaa	gaattcattcatcaaagaagaccctctgcgcatcaacagccacagcagcc ttcagatgagggcaaaagagttctaactggcttaggtcaagtgtttgaat atcagagggactattcctggtcaacacagagctaaatcaaacaaaaattg taagctgagccaataaggtgggaatattcttgcttcatctcttaaaagaa ttgtttgacataagacagtctgccagctctaaagaggttcctagcaattt gaaaaggaactatgcagagggacaaataacagaaataaggttcatacaca agctgtttatcacagcattactaatgttggtaacagtttccataaaaata acccaggcatccaacactgggcaagttggtaaatgaacatcattgcaaca tctcctcacagaagtattaaaaatgagactcacagacatagtggcatgca cctgtatcagcaacacgcagatgttgaagcaagaggatcatgggtttgaa ataagagtaggttgcctacttctgtctccaaagaataagcaaaataaaac atgatgcttacagataatgtgatagtaagtaaaaaacctgtttgacaatg cccaattgtggagagacaccaatagtctaatacagatatgcatacagaga gagagacagagacagagacagagacagagacagagacagagacagagaca gagacagagacagggagagaaaaataggaaataaatgcaagttatgttta atatgtatgacaggcataccgatcatctttgcttctttatatatttctaa atctatgtgtacatttctctttgagaattaaactagactaaagcaaaatg aataaaacacatatgtttcatttcaaaaaacatctcatgaacctgagaca cagcaccttgaataacatatctaataggagaatgaatttggtcctttgag atgtcacacaacagaactgaatctcacagtgtcctgctatgctaggattc tcttgggaaagcatcacagagaagctactcaaatcctaagaaacatgaga gttttcttatctaccagatgtgttttatatgcaacccagagaactctgac tcag
quality values	Open. Hide. 62 47 27 41 62 38 15 56 62 62 62 62 49 54 62 62 47 41 32 62 62 62 62 59 62 62 59 43 43 30 34 28 28 28 40 50 43 62 56 62 59 62 59 59 62 62 62 62 62 62 62 62 59 62 62 59 62 59 62 62 62 59 62 59 59 62 62 62 62 59 62 62 59 56 59 50 59 54 49 54 62 62 62 62 62 59 62 62 62 59 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 54 54 54 54 54 62 62 62 62 62 62 62 62 49 49 54 62 62 54 62 62 62 62 54 54 54 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 59 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 46 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 42 62 62 52 62 58 58 58 58 58 54 58 58 49 58 58 58 58 54 58 58 58 58 54 58 58 58 42 58 54 41 54 58 58 54 58 58 58 58 58 58 58 58 58 58 54 54 58 58 58 58 58 58 52 58 58 58 58 58 58 58 58 58 58 58 58 58 58 58 41 54 35 58 54 58 54 54 52 58 58 58 47 51 58 58 58 51 37 58 50 58 49 47 58 41 58 51 54 58 58 53 54 53 51 53 58 58 49 51 52 51 58 53 53 38 49 50 58 51 53 53 35 58 51 58 58 58 51 51 58 51 39 58 44 39 51 58 58 51 58 51 53 51 58 53 51 51 58 51 40 52 54 51 58 51 50 50 50 53 53 53 40 31 58 51 51 50 50 51 50 44 32 54 53 50 50 32 41 30 42 34 50 54 50 50 49 50 49 49 49 40 34 40 52 27 49 51 51 37 50 52 51 50 52 46 40 50 42 49 40 54 39 31 4 19 27 38 54 54 44 25 53 54 32 52 32 41 52 54 35 33 39 50 39 40 45 26 54 40 37 54 44 37 26 51 37 52 51 45 52 39 40 41 23 35 30 28 34 54 45 37 45 34 37 30 37 37 41 23 54 21 40 32 12 12 47 37 29 47 37 31 31 47 40 40 34 25 13 51 32 53 41 39 36 47 46 40 47 30 34 40 53 37 31 40 40 31 33 31 26 33 26 21 31 32 26 25 53 29 42 31 37 35 28 31 22 23 21 30 17 42 33 27 25 31 51 51 51 51 30 33 31 32 27 22 47 35 43 33 34 16 30 37 31 18 46 46 46 33 26 31 31 28 46 30 31 34 42 48 48 28 32 25 48 48 31 31 36 29 25 31 34 36 34 31 31 31 30 33 26 31 43 33 21 29 30 31 25 16 27 16 34 34 19 31 26 32 33 32 31 29 29 23 22 12 10 17 12 32 24 31 30 31 31 30 24 24 29 32 27 33 21 37 23 27 10 36 28 48 31 26 31 32 20 28 25 33 15 32 31 26 26 31 31 25 47 25 31 36 31 24 12 19 17 48 48 33 21 18 12 12 11 6 10 25 48 30 18 43 43 24 11 17 19 22 8 13 39 39 37 13 6 5 6 4 9 11 21 18 47 30 24 31 18 18 19 15 25 16 32 27 31 28 19 33 22 32 28 22 6 10 13 16 16 16 25 23 21 26 24 27 40 11 10 16 9 7 8 11 3 6 18 14 21 28 13 9 13 9 19 26 11 28 10 25 17 13 15 13 8 5 7 20 13 26 15 29 21 13 16 12 10 15 24 8 16 13 17 8 8 6 8 8 18 9 5 3 5 5 6 6 6 5 9 7 4 5 12 7 8 21 8 14 12 7 15 25 18 16 9 23 6 25 15 5 7 8 16 10 20 11 11 6 8 17 14 13 9 7 6 7 5 3 4 6 6 6 4 6 4 4 5 3 2 6 11 4 9 7 21 28 15 8 7 5 5 2 3 2 6 15 11 5 6 7 2 2 1 2 3 1 4 10 7 5 5 5 3 13 5 9 7 5 14 6 6 8 3 5 11 17 30 20	Open. 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Alignment Information

BAC End 1

BAC End 2

seq1: chr16_10080788_10082008
seq2: B6Ng01-328F04.b_50_1286 (reverse)

seq1  TTTTTAAGTTACATTTATTGGAGGCAGGGAGACCTTTGTG-ATTTAT---  46
      |||||||||||   |||||||| ||   |||||| ||||| ||||||   
seq2  TTTTTAAGTTAACATTATTGGAAGC-CTGAGACCCTTGTGTATTTATACC  49

seq1  CACA--CAGACGT-AGAGGT-CGGAAGACGCCTT--GCCTGAAT-CACA-  88
      ||||   |||| | |||||| || ||||||||||   ||||||| |||| 
seq2  CACAACGAGACCTAAGAGGTCCGAAAGACGCCTTTGCCCTGAATCCACAA  99

seq1  -GCTCT-CTTGCACTGTTTGCATCCTGGGACT-CGAACCG-AAGTTA-TC  133
        |||| |||||||   ||||||||||||||| ||||||| |||||| ||
seq2  GCCTCTCCTTGCACCTGTTGCATCCTGGGACTCCGAACCGAAAGTTATTC  149

seq1  AAGCTTGGCAGCAAACTTCCTTACT-CATAAGCCATCCTAATGACCCGAG  182
      |||| || ||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGC-TGCCAGCAAACTTCCTTACTCCATAAGCCATCCTAATGACCCGAG  198

seq1  AACTG-TTTTCTACCTTTTAAAGATAGAGTTTTATGAAGCCCAGACTGCT  231
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  -ACTGTTTTTCTACCTTTTAAAGATAGAGTTTTATGAAGCCCAGACTGCT  247

seq1  CTTGAGTTTGTTAATGTAGCTGAAGATGACCTTGAACTTCCGCGCATCTT  281
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTTGTTAATGTAGCTGAAGATGACCTTGAACTTCCGCGCATCTT  297

seq1  AATGAAGCCAGCTAGAGAGACAAAGAAAACTGGGAGAGGGGGTAGTGTAG  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCCAGCTAGAGAGACAAAGAAAACTGGGAGAGGGGGTAGTGTAG  347

seq1  GGAGAGAAAAAAGTTCCTCGTCCTGGCATCTGGTTGAAGCTTTGAAGCTT  381
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAAAAAAGTTCCTCGTCCTGGCATCTGGTTGAAGCTTTGAAGCTT  397

seq1  TTTGCCACCTGAGAATAATGAATGCAAACATAACTACCATTGGCAGCAGA  431
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACCTGAGAATAATGAATGCAAACATAACTACCATTGGCAGCAGA  447

seq1  TGGTCCCTTTATAGGAACAGTATTTCTTTTACCTGAGTTGTTCAGATACA  481
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCCTTTATAGGAACAGTATTTCTTTTACCTGAGTTGTTCAGATACA  497

seq1  ATGTTAAAATAGCAATGGTCTACGCTCAACGGCCTGAGTGTACAGGACCA  531
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTAAAATAGCAATGGTCTACGCTCAACGGCCTGAGTGTACAGGACCA  547

seq1  CACATAGCTTTGTCCTTTCCCAGCTGTAAACCTGAAACTTTCTAGGAATG  581
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCTTTGTCCTTTCCCAGCTGTAAACCTGAAACTTTCTAGGAATG  597

seq1  CTGTAAACCTGAAACTTTCTAGGAATCTCACAAGAAGCCCCACTTACAGC  631
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAACCTGAAACTTTCTAGGAATCTCACAAGAAGCCCCACTTACAGC  647

seq1  CAAAGCCCCAGTGACCTCCTGAGCCACATAACCGTCTGCAAGCTCCTCTG  681
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCCCAGTGACCTCCTGAGCCACATAACCGTCTGCAAGCTCCTCTG  697

seq1  GACCACGCTAGGCTCCAGTTTATCAAGCAAAGCCTCTGGAGCCACTAAAG  731
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACGCTAGGCTCCAGTTTATCAAGCAAAGCCTCTGGAGCCACTAAAG  747

seq1  CGCCCGTATGCTGTGAAGACTCTGGAGAAGCGCGCACCCACGCCCAACTT  781
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCCGTATGCTGTGAAGACTCTGGAGAAGCGCGCACCCACGCCCAACTT  797

seq1  CCTGGACTCTTTCCCCTGCGCTGCTCTGACGAGCTTCTTGCTTCAACCTG  831
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACTCTTTCCCCTGCGCTGCTCTGACGAGCTTCTTGCTTCAACCTG  847

seq1  TACTCAAAACTCTTCCTGATAAATTCCGGCTCTGCTTCACACCAGCTCAT  881
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAAAACTCTTCCTGATAAATTCCGGCTCTGCTTCACACCAGCTCAT  897

seq1  CCTGAAACGCTTTTCTGTGGCAAAGTCAGGGATCTCAGTTTCACCTGAGC  931
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAACGCTTTTCTGTGGCAAAGTCAGGGATCTCAGTTTCACCTGAGC  947

seq1  AGAGATCTCTGAAGAGAGTCCCTCAGGTGTAGCAGGCAGTAGCACACAGC  981
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCTCTGAAGAGAGTCCCTCAGGTGTAGCAGGCAGTAGCACACAGC  997

seq1  CTTGCCTCTCCTCAGCCCCGCTGCCTCTGACATCGGATGGCAGGCATGGC  1031
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTCTCCTCAGCCCCGCTGCCTCTGACATCGGATGGCAGGCATGGC  1047

seq1  CCACAATGACTCCCCCGGGCAAAGAGAACTTTTCCCAGCTTGATTTTATT  1081
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAATGACTCCCCCGGGCAAAGAGAACTTTTCCCAGCTTGATTTTATT  1097

seq1  TTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTCAGACAG  1131
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATTTTTCAGACAG  1147

seq1  TCTTAAGCACACCATGCTGGCCTCAATCTCACTGTGTAGCTAAGGCTGAC  1181
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGCACACCATGCTGGCCTCAATCTCACTGTGTAGCTAAGGCTGAC  1197

seq1  CTTAAGCTTTTGACCCTATTAGTCTCCTCCTCCTGAATTC  1221
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGCTTTTGACCCTATTAGTCTCCTCCTCCTGAATTC  1237

seq1: chr16_9929613_9930727
seq2: B6Ng01-328F04.g_66_1169

seq1  GAATTCATTCATCAAAGAAGACCCTCTGCGCATCAACAGCCACAGCAGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCATCAAAGAAGACCCTCTGCGCATCAACAGCCACAGCAGCC  50

seq1  TTCAGATGAGGGCAAAAGAGTTCTAACTGGCTTAGGTCAAGTGTTTGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGAGGGCAAAAGAGTTCTAACTGGCTTAGGTCAAGTGTTTGAAT  100

seq1  ATCAGAGGGACTATTCCTGGTCAACACAGAGCTAAATCAAACAAAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGGACTATTCCTGGTCAACACAGAGCTAAATCAAACAAAAATTG  150

seq1  TAAGCTGAGCCAATAAGGTGGGAATATTCTTGCTTCATCTCTTAAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTGAGCCAATAAGGTGGGAATATTCTTGCTTCATCTCTTAAAAGAA  200

seq1  TTGTTTGACATAAGACAGTCTGCCAGCTCTAAAGAGGTTCCTAGCAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGACATAAGACAGTCTGCCAGCTCTAAAGAGGTTCCTAGCAATTT  250

seq1  GAAAAGGAACTATGCAGAGGGACAAATAACAGAAATAAGGTTCATACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGAACTATGCAGAGGGACAAATAACAGAAATAAGGTTCATACACA  300

seq1  AGCTGTTTATCACAGCATTACTAATGTTGGTAACAGTTTCCATAAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTTATCACAGCATTACTAATGTTGGTAACAGTTTCCATAAAAATA  350

seq1  ACCCAGGCATCCAACACTGGGCAAGTTGGTAAATGAACATCATTGCAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGCATCCAACACTGGGCAAGTTGGTAAATGAACATCATTGCAACA  400

seq1  TCTCCTCACAGAAGTATTAAAAATGAGACTCACAGACATAGTGGCATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCACAGAAGTATTAAAAATGAGACTCACAGACATAGTGGCATGCA  450

seq1  CCTGTATCAGCAACACGCAGATGTTGAAGCAAGAGGATCATGGGTTTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTATCAGCAACACGCAGATGTTGAAGCAAGAGGATCATGGGTTTGAA  500

seq1  ATAAGAGTAGGTTGCCTACTTCTGTCTCCAAAGAATAAGCAAAATAAAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAGTAGGTTGCCTACTTCTGTCTCCAAAGAATAAGCAAAATAAAAC  550

seq1  ATGATGCTTACAGATAATGTGATAGTAAGTAAAAAACCTGTTTGACAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGCTTACAGATAATGTGATAGTAAGTAAAAAACCTGTTTGACAATG  600

seq1  CCCAATTGTGGAGAGACACCAATAGTCTAATACAGATATGCATACAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTGTGGAGAGACACCAATAGTCTAATACAGATATGCATACAGAGA  650

seq1  GAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACA  700

seq1  GAGACAGAGACAGGGAGAGAAAAATAGGAAATAAATGCAAGTTATGTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGACAGGGAGAGAAAAATAGGAAATAAATGCAAGTTATGTTTA  750

seq1  ATATGTATGACAGGCATACCGATCATCTTTGCTTCTTTATATATTTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTATGACAGGCATACCGATCATCTTTGCTTCTTTATATATTTCTAA  800

seq1  ATCTATGTGTACATTTCTCTTTGAGAATTAAACTAGACTAAAGCAAAATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTGTACATTTCTCTTTGAGAATTAAACTAGACTAAAGCAAAATG  850

seq1  AATAAAACACATATGTTTCATTTCAAAAAACATCTCATGAACCTGAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACACATATGTTTCATTTCAAAAAACATCTCATGAACCTGAGACA  900

seq1  CAGCACCTTGAATAACATATCTAATAGGAGAATGAATTTGGTCCTTTGAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGCACCTTGAATAACATATCTAATAGGAGAATGAATTTGGTCCTTTGA-  949

seq1  GATGTCACACAACAGAACTGAATCTCACAGTGTCCTGCTAATGCTAGGAT  1000
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GATGTCACACAACAGAACTGAATCTCACAGTGTCCTGCT-ATGCTAGGAT  998

seq1  TCTCTTGGGAAAGCATCACAGAGAAGCTACTCAAATCCTTAAGAAACATT  1050
      |||||||||||||||||||||||||||||||||||||| |||||||||| 
seq2  TCTCTTGGGAAAGCATCACAGAGAAGCTACTCAAATCC-TAAGAAACAT-  1046

seq1  AAGGAG-GTTTTCTTATCTACCCAAGATGGTGTTTATATGCAAAACCCAG  1099
         ||| |||||||||||||||  |||||   |||||||||  |||||||
seq2  ---GAGAGTTTTCTTATCTACC--AGATGTGTTTTATATGC--AACCCAG  1089

seq1  AGAACTCTGGACTCAG  1115
      |||||||| |||||||
seq2  AGAACTCT-GACTCAG  1104

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information