BAC Information

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BAC

Clone NameB6Ng01-328F20
Chromosome8 (Build37)16 (Build37)
Map Location 97,290,981 - 97,292,23481,271,468 - 81,271,722
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneGnao1, Amfr, Nudt21, Ogfod1, Bbs2, Mt4, Mt3, Mt2, Mt1, Nup93, LOC100041555, Slc12a3, Herpud1, EG434339, AI451557, Cpne2, 2310065K24Rik, Rspry1, Arl2bp, Pllp, Ccl22
Downstream geneCx3cl1, 1700121C10Rik, Ccl17, Ciapin1, LOC664947, Coq9, Polr2c, Dok4, LOC100040942, Ccdc102a, Gpr114, Gpr56, Gpr97, Gm770, Katnb1, Kifc3, BC016201, Map1lc3-ps6, 1700055M20Rik, Zfp319, AA960436, Mmp15, Gtl3, Csnk2a2, 4933406B17Rik, Ccdc113, 4931432M23Rik, EG546088, LOC100041040, Gins3, LOC547022, Ndrg4, Setd6, Cnot1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328F20.bB6Ng01-328F20.g
ACCGA115651GA115652
length1,235443
definitionB6Ng01-328F20.b B6Ng01-328F20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,290,981 - 97,292,234)(81,271,468 - 81,271,722)
sequence
gaattctttgcccaaagcaaggcaaagcaaggctggcccctcaaccattc
ttcgaaaatttcaagcaatacagaagagagaacgacagaaagtattttca
tagttcaacctccaagattcaatgctcaacatttttcatatttgctttat
ctcccccccccccccggctaaactattgcaaaaaaaaagtttctggccgc
ttggcatttttgcctccagtggatcagggtgcctctccattttcattcat
aagtatgcaacaattatgattcttctacctcacagaaacaacagtagctc
gcctatgtcatgtaacactcagttcacattccaatttgtccccaaatgta
ttctttctccttcactacctcaaagccttttcttccttccttcccttctt
cctttcttcttttctttctttgtttcttttttttttaaatctttcttctt
tctttattttaggatttattttcactcctgttcatgtttgtgtgtgtgcc
acctgtgtgcaggtgcctgctgaggccaggaaagagcacggaatcctctg
gagaaagggccataggcggttgtgagccatgggaggtgggtgctgggaag
tgaacccaggtcctctgccagagcagcatacctctaagccatctctccag
cccttcttcacctttcccactcattcctttcccccagcccccttcagcct
ctctttcacaggatctccatagctagcccaagtaagccttgaactcagaa
tccacctgtttcagttttaccagagctgggatatccaagcttgagtcaca
cagctggcaacacctgctttttttttttttttaaatccttcctgaattag
actatcatctaaccttgtgcattgcataccgttatttttcttgtacaagt
tgatacttgcagaccactcgctcatttttatttttatgacattgaccttt
cgaagagtcaagagcattgtttgtacaaagctctcgtcctaacttatcta
gttacttccttatgagtcatctcatttttttcccttatcctgtgtgctct
ataaccagagctttaccacatgttggatggagacccagattcacattcag
caagacactgccatgatgagtaggccgaagcttgtgtgtggccaggcgct
cactttcctttggtcggagagacggattacaggtattgatgatcgttagg
tactgttgtcctgtgaacctcacaaaaccttgggg
atcccatatacaaccaccaaacccagacaccattgcatatgccagcaaga
ttttgctgacaggaccctgatatagctgtctcttgtgaggctatgccagt
gcctgacaaatacagaagtggatactcacagtcatctaatggttggaaca
cagggcccctaaagaaggagctagagaaagtacccaaggagctaaagggg
tcggcatccctataggaggatcaacaatatgaactaaaagtacccccaca
gaactgtgtctctagttgcatatgtagcagaggatggcctagttggccat
caatgggaggagaggcccttggtcttgggaagatcatatcccccaataca
ggggaatgccagggccaggaagctggagtgggtgggttgggaagcagggt
tgggggagggtataggggactttgggggtaacatttgaaatgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_97290981_97292234
seq2: B6Ng01-328F20.b_43_1277 (reverse)

seq1  CCCCAAAG-TTTGTGAG--TCACAAGACAACAGTACTTCTACAACGAAAT  47
      |||||| | ||||||||  ||||| ||||||||||| |    ||||  ||
seq2  CCCCAAGGTTTTGTGAGGTTCACAGGACAACAGTACCT----AACG--AT  44

seq1  CAACTCATTCACCTGCTAATCCGTCTCTTCCGACCAAAGGAAAAGTGAGC  97
      ||  ||| | ||||| ||||||||||| |||||||||||| |||||||||
seq2  CA--TCAAT-ACCTG-TAATCCGTCTC-TCCGACCAAAGG-AAAGTGAGC  88

seq1  GCCCTGCTCACACAC-AGCTCTCGGGCTTACTCATTCATGCCAGTGTCTT  146
      | ||||  ||||||| |||| || ||| |||||| ||||| |||||||||
seq2  G-CCTGGCCACACACAAGCT-TC-GGCCTACTCA-TCATGGCAGTGTCTT  134

seq1  GCCTTGAATGTGAATTCTGGGTCT-CATCCAACATGTTGGTTAAAGCTCT  195
      ||  |||||||||| ||||||||| ||||||||||||  | |||||||||
seq2  GC--TGAATGTGAA-TCTGGGTCTCCATCCAACATGT--GGTAAAGCTCT  179

seq1  GGTTTATAGGAAGCACACAGGATAAGGGGAAAAAAATGAGATGACTCATA  245
      || ||||||  |||||||||||||| ||||||||||||||||||||||||
seq2  GG-TTATAG--AGCACACAGGATAA-GGGAAAAAAATGAGATGACTCATA  225

seq1  AGGAAGTAACTAGATAAGTTAGGACGAGAGCTTTGTACAAACAATGCTCT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTAACTAGATAAGTTAGGACGAGAGCTTTGTACAAACAATGCTCT  275

seq1  TGACTCTTCGAAAGGTCAATGTCATAAAAATAAAAATGAGCGAGTGGTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCTTCGAAAGGTCAATGTCATAAAAATAAAAATGAGCGAGTGGTCT  325

seq1  GCAAGTATCAACTTGTACAAG-AAAATAACGGTATGCAATGCACAAGGTT  394
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAAGTATCAACTTGTACAAGAAAAATAACGGTATGCAATGCACAAGGTT  375

seq1  AGATGATAGTCTAATTCAGGAAGGATTTAAAAAAAAAAAAAAAGCAGGTG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATAGTCTAATTCAGGAAGGATTTAAAAAAAAAAAAAAAGCAGGTG  425

seq1  TTGCCAGCTGTGTGACTCAAGCTTGGATATCCCAGCTCTGGTAAAACTGA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCTGTGTGACTCAAGCTTGGATATCCCAGCTCTGGTAAAACTGA  475

seq1  AACAGGTGGATTCTGAGTTCAAGGCTTACTTGGGCTAGCTATGGAGATCC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGTGGATTCTGAGTTCAAGGCTTACTTGGGCTAGCTATGGAGATCC  525

seq1  TGTGAAAGAGAGGCTGAAGGGGGCTGGGGGAAAGGAATGAGTGGGAAAGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGAGAGGCTGAAGGGGGCTGGGGGAAAGGAATGAGTGGGAAAGG  575

seq1  TGAAGAAGGGCTGGAGAGATGGCTTAGAGGTATGCTGCTCTGGCAGAGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAGGGCTGGAGAGATGGCTTAGAGGTATGCTGCTCTGGCAGAGGA  625

seq1  CCTGGGTTCACTTCCCAGCACCCACCTCCCATGGCTCACAACCGCCTATG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGTTCACTTCCCAGCACCCACCTCCCATGGCTCACAACCGCCTATG  675

seq1  GCCCTTTCTCCAGAGGATTCCGTGCTCTTTCCTGGCCTCAGCAGGCACCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTCTCCAGAGGATTCCGTGCTCTTTCCTGGCCTCAGCAGGCACCT  725

seq1  GCACACAGGTGGCACACACACAAACATGAACAGGAGTGAAAATAAATCCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAGGTGGCACACACACAAACATGAACAGGAGTGAAAATAAATCCT  775

seq1  AAAATAAAGAAAGAAGAAAGATTTAAAAAAAAAAGAAACAAAGAAAGAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAGAAAGAAGAAAGATTTAAAAAAAAAAGAAACAAAGAAAGAAA  825

seq1  AGAAGAAAGGAAGAAGGGAAGGAAGGAAGAAAAGGCTTTGAGGTAGTGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAGGAAGAAGGGAAGGAAGGAAGAAAAGGCTTTGAGGTAGTGAA  875

seq1  GGAGAAAGAATACATTTGGGGACAAATTGGAATGTGAACTGAGTGTTACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGAATACATTTGGGGACAAATTGGAATGTGAACTGAGTGTTACA  925

seq1  TGACATAGGCGAGCTACTGTTGTTTCTGTGAGGTAGAAGAATCATAATTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATAGGCGAGCTACTGTTGTTTCTGTGAGGTAGAAGAATCATAATTG  975

seq1  TTGCATACTTATGAATGAAAATGGAGAGGCACCCTGATCCACTGGAGGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATACTTATGAATGAAAATGGAGAGGCACCCTGATCCACTGGAGGCA  1025

seq1  AAAATGCCAAGCGGCCAGAAACTTTTTTTTTGCAATAGTTTAGCCGGGGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCCAAGCGGCCAGAAACTTTTTTTTTGCAATAGTTTAGCCGGGGG  1075

seq1  GGGGGGGGAGATAAAGCAAATATGAAAAATGTTGAGCATTGAATCTTGGA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGGGAGATAAAGCAAATATGAAAAATGTTGAGCATTGAATCTTGGA  1125

seq1  GGTTGAACTATGAAAATACTTTCTGTCGTTCTCTCTTCTGTATTGCTTGA  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAACTATGAAAATACTTTCTGTCGTTCTCTCTTCTGTATTGCTTGA  1175

seq1  AATTTTCGAAGAATGGTTGAGGGGCCAGCCTTGCTTTGCCTTGCTTTGGG  1244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCGAAGAATGGTTGAGGGGCCAGCCTTGCTTTGCCTTGCTTTGGG  1225

seq1  CAAAGAATTC  1254
      ||||||||||
seq2  CAAAGAATTC  1235

seq1: chr16_81271468_81271722
seq2: B6Ng01-328F20.g_329_514 (reverse)

seq1  ACATTTCAAATGTTTTTTTTTTAATTTTTCCCACGAGAATTCATTTTTTA  50
                                                        
seq2  --------------------------------------------------  0

seq1  ATTAGATATTTTCTTCATTTGCATTTCAAATGCTATCCCCAAAGTCCCCT  100
                           ||||||||||| || ||||||||||||||
seq2  --------------------ACATTTCAAATGTTACCCCCAAAGTCCCCT  30

seq1  ATACCCTCTCACCACCCTGCTCCCTAGCCCACCCACTCCTGCTTCCTGGC  150
      |||||||| | | |||||||| || | |||||||||||| ||||||||||
seq2  ATACCCTCCCCCAACCCTGCTTCCCAACCCACCCACTCCAGCTTCCTGGC  80

seq1  CCTGG-TTTCCCCTGTAGTGGGGCATATGATCTTCAAAAGACCAAGGGCC  199
      |||||  |||||||||| ||||| |||||||||||  |||||||||||||
seq2  CCTGGCATTCCCCTGTATTGGGGGATATGATCTTCCCAAGACCAAGGGCC  130

seq1  TCTCTTCTAATTGTTGGCCAACTAGGCCATCCTCTGCTACATATGCAACT  249
      |||| ||  |||| ||||||||||||||||||||||||||||||||||||
seq2  TCTCCTCCCATTGATGGCCAACTAGGCCATCCTCTGCTACATATGCAACT  180

seq1  AGAGAC  255
      ||||||
seq2  AGAGAC  186