BAC Information

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BAC

Clone NameB6Ng01-328N05
Chromosome16 (Build37)
Map Location 10,840,949 - 11,014,427
singlet/doubletdoublet
Overlap geneA630055G03Rik, Litaf, LOC100043147
Upstream geneGrin2a, LOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik, Socs1, Tnp2, Prm3, Prm2, Prm1
Downstream geneLOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328N05.bB6Ng01-328N05.g
ACCGA115981GA115982
length875615
definitionB6Ng01-328N05.b B6Ng01-328N05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,013,556 - 11,014,427)(10,840,949 - 10,841,563)
sequence
gaattcctgaaaagaagacttggtgaagctgggcggtagtggcacatccc
tttaatcccagcatttaggaggcagaggcaagcagatctttgtgagcttg
aggccagcctgatctacaaagcaagtatgcatgtatgtctctatctatat
ctaaatatatgtgcatgtctatttatatgtgagcacgtatgcctctctgt
atatgggtgtgtatatgtctatatatgtgcatgtatatttttctctacat
gtgtgcatgtgtatcgacatgtttgcacatatccctatcataaatgtgta
catgtatgcctatctatatgtgtgcacttatgtctctacttatacatgtg
tgtttgctggctgggaaaagggaaaaaagaggaaagagctctcaaggaaa
gggggtggcagggtgatggattgtagaggggacactgtgtggaagaagaa
agggacttggtggaggggtgggctcagcgagggaggggaacaaatgagaa
caggtgtgatggcgctcagaagtgaagcacctttgctctgtatgtgttgg
gagccgcgcccacattcgccgttacaagatggcgctgacagctgtgttct
aagtggtaaacaaataatctgcgcatgtgcccaagggtatcttatgacta
cttgtgctctgcctttccccgtgacgtcaactcggccgatggggctgcag
cccattcagggagtgacacgtcccgaggccaaggagaatgctccttaaga
gggacggggtttcctttttctctctctcttgcttctggctctcttgcttc
tgctctcttgcttcttgcactcctgctcctaaagatgtaacaataaagtt
ttgcctcataagatttgggtctgtg
gaattcactttttagaccaggctggcctcgaactcagaaatccgcctgcc
tctgcctccccagtgctgggattaaaggcgtgcgccaccacacccggccc
tagtaacattttttgtgtggtgtagtttttaaaagtaagccctactatct
gtttgtcttaaagacagggtcttatatagctcaggtagtctccagctcat
gactctcttccctcccctccagcccgttgagattacgggtgtgcactact
gtgtctgcagtgctggggatggaacccagggcttcctgcaagctaagcaa
acactgtattactgagccacatttccagcctaaaatgttgatttattaaa
acagttttaggtttttggaaagaatgaacagaaagtgtttccataagcac
actgaagctgaggctgtgtatgtgttaagcaaacacatgagctagagccc
cagctcttgtgtcttcaaggctagccagatgtggcaggcctcctgctgct
gcctccagagtgtggcccacaccccacactcggcccccacacccagcctc
tcctggattgccatgagcatcaggtggtacttgtcaccataaaagctaag
gattcacctggcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_11013556_11014427
seq2: B6Ng01-328N05.b_48_922 (reverse)

seq1  CACAGACCAAAATCTTCTGCGGCAAAACTTTATTGCTTACATCTTCAGGA  50
      |||||||| ||||||| || ||||||||||||||| ||||||||| ||||
seq2  CACAGACCCAAATCTTATGAGGCAAAACTTTATTG-TTACATCTTTAGGA  49

seq1  GCAGGAGTGCAAGAAGCAAGAGAGCAAGAAGCAAGAGAGCAAGAAGCAAG  100
      ||||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  GCAGGAGTGCAAGAAGCAAGAGAGC-AGAAGCAAGAGAGCCAGAAGCAAG  98

seq1  AGAGAGAGAAAAACGAAACCCCGTCCCTCTTAAGGAGCATTCTCCTTCGC  150
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  AGAGAGAGAAAAAGGAAACCCCGTCCCTCTTAAGGAGCATTCTCCTTGGC  148

seq1  CTC-GGACGTGTCACTCCCTG-ATTGGCTGCAG-CCCATCGGCCGAGTTG  197
      ||| ||||||||||||||||| || |||||||| ||||||||||||||||
seq2  CTCGGGACGTGTCACTCCCTGAATGGGCTGCAGCCCCATCGGCCGAGTTG  198

seq1  ACGTCACGGGG-AAGGCAGAGCACAAGTAGTCATAAGATACCCTT-GGCA  245
      ||||||||||| ||||||||||||||||||||||||||||||||| ||||
seq2  ACGTCACGGGGAAAGGCAGAGCACAAGTAGTCATAAGATACCCTTGGGCA  248

seq1  CATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATC  298

seq1  TTGTAACGGCGAATGTGGGCGCGGCTCCCAACACATACAGAGCAAAGGTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAACGGCGAATGTGGGCGCGGCTCCCAACACATACAGAGCAAAGGTG  348

seq1  CTTCACTTCTGAGCGCCATCACACCTGTTCTCATTTGTTCCCCTCCCTCG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTCTGAGCGCCATCACACCTGTTCTCATTTGTTCCCCTCCCTCG  398

seq1  CTGAGCCCACCCCTCCACCAAGTCCCTTTCTTCTTCCACACAGTGTCCCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCCCACCCCTCCACCAAGTCCCTTTCTTCTTCCACACAGTGTCCCC  448

seq1  TCTACAATCCATCACCCTGCCACCCCCTTTCCTTGAGAGCTCTTTCCTCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATCCATCACCCTGCCACCCCCTTTCCTTGAGAGCTCTTTCCTCT  498

seq1  TTTTTCCCTTTTCCCAGCCAGCAAACACACATGTATAAGTAGAGACATAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCCTTTTCCCAGCCAGCAAACACACATGTATAAGTAGAGACATAA  548

seq1  GTGCACACATATAGATAGGCATACATGTACACATTTATGATAGGGATATG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACATATAGATAGGCATACATGTACACATTTATGATAGGGATATG  598

seq1  TGCAAACATGTCGATACACATGCACACATGTAGAGAAAAATATACATGCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACATGTCGATACACATGCACACATGTAGAGAAAAATATACATGCA  648

seq1  CATATATAGACATATACACACCCATATACAGAGAGGCATACGTGCTCACA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATAGACATATACACACCCATATACAGAGAGGCATACGTGCTCACA  698

seq1  TATAAATAGACATGCACATATATTTAGATATAGATAGAGACATACATGCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATAGACATGCACATATATTTAGATATAGATAGAGACATACATGCA  748

seq1  TACTTGCTTTGTAGATCAGGCTGGCCTCAAGCTCACAAAGATCTGCTTGC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCTTTGTAGATCAGGCTGGCCTCAAGCTCACAAAGATCTGCTTGC  798

seq1  CTCTGCCTCCTAAATGCTGGGATTAAAGGGATGTGCCACTACCGCCCAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCTCCTAAATGCTGGGATTAAAGGGATGTGCCACTACCGCCCAGC  848

seq1  TTCACCAAGTCTTCTTTTCAGGAATTC  872
      |||||||||||||||||||||||||||
seq2  TTCACCAAGTCTTCTTTTCAGGAATTC  875

seq1: chr16_10840949_10841563
seq2: B6Ng01-328N05.g_69_683

seq1  GAATTCACTTTTTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTTTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCC  50

seq1  TCTGCCTCCCCAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCCAGTGCTGGGATTAAAGGCGTGCGCCACCACACCCGGCCC  100

seq1  TAGTAACATTTTTTGTGTGGTGTAGTTTTTAAAAGTAAGCCCTACTATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACATTTTTTGTGTGGTGTAGTTTTTAAAAGTAAGCCCTACTATCT  150

seq1  GTTTGTCTTAAAGACAGGGTCTTATATAGCTCAGGTAGTCTCCAGCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTCTTAAAGACAGGGTCTTATATAGCTCAGGTAGTCTCCAGCTCAT  200

seq1  GACTCTCTTCCCTCCCCTCCAGCCCGTTGAGATTACGGGTGTGCACTACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTCTTCCCTCCCCTCCAGCCCGTTGAGATTACGGGTGTGCACTACT  250

seq1  GTGTCTGCAGTGCTGGGGATGGAACCCAGGGCTTCCTGCAAGCTAAGCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGCAGTGCTGGGGATGGAACCCAGGGCTTCCTGCAAGCTAAGCAA  300

seq1  ACACTGTATTACTGAGCCACATTTCCAGCCTAAAATGTTGATTTATTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTATTACTGAGCCACATTTCCAGCCTAAAATGTTGATTTATTAAA  350

seq1  ACAGTTTTAGGTTTTTGGAAAGAATGAACAGAAAGTGTTTCCATAAGCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTAGGTTTTTGGAAAGAATGAACAGAAAGTGTTTCCATAAGCAC  400

seq1  ACTGAAGCTGAGGCTGTGTATGTGTTAAGCAAACACATGAGCTAGAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGCTGAGGCTGTGTATGTGTTAAGCAAACACATGAGCTAGAGCCC  450

seq1  CAGCTCTTGTGTCTTCAAGGCTAGCCAGATGTGGCAGGCCTCCTGCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGCTCTTGTGTCTTCAAGGCTAGCCAGATGTGGCAGGCCTCCTGCTGCT  500

seq1  GCCTCCAGAGTGTGGCCCACACCCCACACTCGGCCCCCACACCCAGCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCAGAGTGTGGCCCACACCCCACACTCGGCCCCCACACCCAGCCTC  550

seq1  ACCTGGATTGCCATGAGCATCAGGTGGTACTTGTCACCAGAAAAGCTAAG  600
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TCCTGGATTGCCATGAGCATCAGGTGGTACTTGTCACCATAAAAGCTAAG  600

seq1  GAGTCACCTGGCAGG  615
      || ||||||||||||
seq2  GATTCACCTGGCAGG  615