BAC Information

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BAC

Clone NameB6Ng01-330M20
Chromosome16 (Build37)
Map Location 16,099,275 - 16,100,333
singlet/doubletsinglet
Overlap gene2310008H04Rik
Upstream geneLOC665653, LOC385748, LOC100042743, LOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, LOC100043266
Downstream geneLOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-330M20.g
ACCGA117351
length1,053
definitionB6Ng01-330M20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgagcaatactgaatggctgagaagcacctgaaaaaaat
gttcagcatccttcatcatcagggaaatacaaatcaaaacaaccctgaga
ttccacctcacaccagccagaatggctgaggtaaaaaattcaggtgacag
cagatgctggcaaggatgtggagaaagaggaacgctcctccattgttggt
gggattgcaagcttgtataaccactctggaaatcagtctggcggttcctc
agaaaattggacatagtactaccggaggatcccgcaatacctctcctggg
catatatccagaagatgttccaactggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgtccctcaacagaggaatggaaccactgcggaactatgacattggaatg
caaagggcactttatccaagacacctgcctctatgagtgttcccagaact
tgagaccctggatacagtaggtggaccagaactggtgcaaagagcggatc
cttgacgttcccctgtgaaagaggactgtcagcagtggtgggaggactgc
cagagctcttttacctgcaagagcaactggcacaagggaaggaactggtc
ctcggagcataatgagcttcctgtgggagcctcctgccttcccttcacag
tcttacttccccacatttgctgctctgtgtgaggaaatctggagccactc
ctacaagctcatcaactacagcagagggagcagctgctgcattcagatgt
gggtagacccagccccaaggcaaccccaaagaggacgtggcaaggttcta
tgccattagtggagctgggcttcatggggcctggccaattgtgcgcagcc
tgtccttattgctgctctgggtgttcagctgagttccttttttaccttca
attgtctggagtgccaccctgctggcttagcctcccagctcccagcctcc
tttgtgtgggctctgacagcctcttcaataacagacattcaaaaagaaaa
aga
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16099275_16100333
seq2: B6Ng01-330M20.g_66_1118

seq1  GAATTCTCACCTGAGCAATACTGAATGGCTGAGAAGCACCTGAAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACCTGAGCAATACTGAATGGCTGAGAAGCACCTGAAAAAAAT  50

seq1  GTTCAGCATCCTTCATCATCAGGGAAATACAAATCAAAACAACCCTGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCATCCTTCATCATCAGGGAAATACAAATCAAAACAACCCTGAGA  100

seq1  TTCCACCTCACACCAGCCAGAATGGCTGAGGTAAAAAATTCAGGTGACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACCTCACACCAGCCAGAATGGCTGAGGTAAAAAATTCAGGTGACAG  150

seq1  CAGATGCTGGCAAGGATGTGGAGAAAGAGGAACGCTCCTCCATTGTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGCTGGCAAGGATGTGGAGAAAGAGGAACGCTCCTCCATTGTTGGT  200

seq1  GGGATTGCAAGCTTGTATAACCACTCTGGAAATCAGTCTGGCGGTTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGCAAGCTTGTATAACCACTCTGGAAATCAGTCTGGCGGTTCCTC  250

seq1  AGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTGGACATAGTACTACCGGAGGATCCCGCAATACCTCTCCTGGG  300

seq1  CATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATCCAGAAGATGTTCCAACTGGTAAGAAGGACACATGCTCCACTA  350

seq1  TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGA  400

seq1  TGTCCCTCAACAGAGGAATGGAACCACTGCGGAACTATGACATTGGAATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCTCAACAGAGGAATGGAACCACTGCGGAACTATGACATTGGAATG  450

seq1  CAAAGGGCACTTTATCCAAGACACCTGCCTCTATGAGTGTTCCCAGAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGCACTTTATCCAAGACACCTGCCTCTATGAGTGTTCCCAGAACT  500

seq1  TGAGACCCTGGATACAGTAGGTGGACCAGAACTGGTGCAAAGAGCGGATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACCCTGGATACAGTAGGTGGACCAGAACTGGTGCAAAGAGCGGATC  550

seq1  CTTGACGTTCCCCTGTGAAAGAGGACTGTCAGCAGTGGTGGGAGGACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACGTTCCCCTGTGAAAGAGGACTGTCAGCAGTGGTGGGAGGACTGC  600

seq1  CAGAGCTCTTTTACCTGCAAGAGCAACTGGCACAAGGGAAGGAACTGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCTTTTACCTGCAAGAGCAACTGGCACAAGGGAAGGAACTGGTC  650

seq1  CTCGGAGCATAATGAGCTTCCTGTGGGAGCCTCCTGCCTTCCCTTCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGAGCATAATGAGCTTCCTGTGGGAGCCTCCTGCCTTCCCTTCACAG  700

seq1  TCTTACTTCCCCACATTTGCTGCTCTGTGTGAGGAAATCTGGAGCCACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACTTCCCCACATTTGCTGCTCTGTGTGAGGAAATCTGGAGCCACTC  750

seq1  CTACAAGCTCAGCAACTACAGCAGAGGGAGCAGCTGCTGCATTCAGATGT  800
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTACAAGCTCATCAACTACAGCAGAGGGAGCAGCTGCTGCATTCAGATGT  800

seq1  GGGTAGACCCAG-CCCAAGGCAACCCCAAAGAGGAAGTGGCAAGGTTCTA  849
      |||||||||||| |||||||||||||||||||||| ||||||||||||||
seq2  GGGTAGACCCAGCCCCAAGGCAACCCCAAAGAGGACGTGGCAAGGTTCTA  850

seq1  TGCCATTAGTGGAGCTGGGCTTCATGGGGCCTGGCCAATTGTGCGCAGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTAGTGGAGCTGGGCTTCATGGGGCCTGGCCAATTGTGCGCAGCC  900

seq1  TGTCCTTATTGCTGCTCTGGGTGTTCAGCTGAGTTCCTTTTTTACCTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTATTGCTGCTCTGGGTGTTCAGCTGAGTTCCTTTTTTACCTTCA  950

seq1  ATTGTCTGGAGTGCCACCCTGCTTGGCTTAGCCTCCCAGCTCCCAGCCTC  999
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ATTGTCTGGAGTGCCACCCTGC-TGGCTTAGCCTCCCAGCTCCCAGCCTC  999

seq1  CTTTGTGGTGGGGCTCTGACAGCCTCTTCAATAAACCAGACATTCAAAAA  1049
      |||||||   ||||||||||||||||||||||||  |||||||||  |||
seq2  CTTTGTG--TGGGCTCTGACAGCCTCTTCAATAA--CAGACATTC--AAA  1043

seq1  AAGAAAAAGA  1059
      ||||||||||
seq2  AAGAAAAAGA  1053