BAC Information

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BAC

Clone NameB6Ng01-331E20
Chromosome16 (Build37)
Map Location 66,000,630 - 66,132,725
singlet/doubletdoublet
Overlap genenone
Upstream geneHtr1f, LOC668247, LOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
Downstream geneLOC100039035, Cadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331E20.bB6Ng01-331E20.g
ACCGA117706GA117707
length1,1391,186
definitionB6Ng01-331E20.b B6Ng01-331E20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,131,590 - 66,132,725)(66,000,630 - 66,001,811)
sequence
gaattctgttaactcctgcaatgaaacatagagaaccgtgttgcttcatt
tgaaatgacagggaagttaactgttgtattttgtgttaatttcttaagtg
gggattcttaccatatgtagccgctaggtaagcatggccagggctaagcc
tcatcaatgattcatttctcctatgcatttgacggactgcaaatgtcttc
atagttcacctagctggaggcaaagctttataggttgcttctcgctgaag
aggcactccttggtggctgccttagttagggtgttactgctgtgaacaga
taccatgaccaaagcaagtcttttaaaacaaaatttaattggggctggct
tacaggttcagaggttcagttcattatcatcaaggtgggagcatggcagt
gtccaggcaggcatggctcaggcagagctgagagttctacatcttcatcc
aaaggcagctagtggaagacttacttccaggcaactagagtgaggatctt
atgcccacacccacagtggcacacctactccaaccaggtcacacctattc
caacaaggccacatctccaaatggtgccactccctggtccaaggatatac
aaaccatcacaggggctaagacctggtggccagttgacaatttgaagatg
aatgctgtgcttctggttagatctcacaatgcgcatcactacaggccctt
atgtgtgactacattctaatattaacttcattatttgtttgatagttata
tatttctatttcttttctatgaaaattataagtaaataatgctctaaatt
gtttgtgacttttggctgtttctacgtgtttataataaactttctattat
aagactgcatgcataatgactcttgttgctgaactattttaaactacaga
cattttggtggccttactctatgggctacctccaggagattaaacgcttc
cgttaattacattgaacctttatttataaactactaacattttgaagaat
gggttaatataacctatacaataagcccagtttcttacattatgaaataa
tatgtatagctcaatttttattttatgtgaagaaatatttaaattcttgc
ccttaacaatagctttttctccgaataatataagatctg

gaattcatgtttcttagcttctataatttaaaaataaataaataaaataa
aaccaatcccgttgtctactgtggggatttttatgctgagaaagtgaact
acaatttacaactgaagaaactcgaacttccatgaattcaaggcaaacat
ttcttgtttgaggagcttatttttaagcacttaaatacttcaaaatataa
cctagttgatgattttcataaactcatcttccgaggttttctcttgaccc
aggttttgtctatcaaagtaatattaattggatttcatcttttcctttca
tgacaacacaaggtgatcagtccacctgtctgaatatctatctacctttc
aggagactgtgcatcaaagagtgtacaataactcaagggaatgagctaag
taacagatgaagctgtctgcaggaccggggtcctttcatggttgcagtat
ttcatacaatttcgttggcaaattgcctaccagatgggctacagcccagg
agggaggtttactgctctactccccagaatggtgtcccctcgcattttct
cccctttaggtttgaatgtcagttgcttgcagaggggaaaagaaagggct
cgcacttgggattcttgagtgactgccagaaaagaattgtctctgagaat
tgccattttccaggttcccatagtatgcagtaaacccaattatccaagct
aagggttagaaaccggaaacaggggtgggggcatcttataactatcaaca
tggatatcttctgagaggcagcaataaaaggatctattacacttcagttg
ttaaacttaagatacactattgatattcataaaataattgcagatcgctg
cagtcactcagagtctaggccacaagatactgacaaattttcctgtattg
gtcacaggtatttgcttaaggtctttttactactgagattaggtcaaggg
tttagaaagttgtgggacactagacaaacatccactgccaattactttcg
acgtccatagctgcttaatggttttcaagtccctgggaaacatgaaaaaa
aagtggcatgtacatttatatgaagttaaattttcactgttcataataat
ccgcactgtaactcatcagtgagccagtcctttcaatgtgaccaaatgac
attgtcaaaacctcaaacatttttgatatatttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66131590_66132725
seq2: B6Ng01-331E20.b_45_1183 (reverse)

seq1  CAGATCTTATATTA-TCTGAGAAAAGGCTATTGTTAAAGGCCAAGATTTA  49
      |||||||||||||| || ||||||| ||||||||||| ||| |  |||||
seq2  CAGATCTTATATTATTCGGAGAAAAAGCTATTGTTAAGGGCAAGAATTTA  50

seq1  AATA-TTCTCCACAT-AAATAAAAATGGAGCTAATACATTATATTTCATA  97
      |||| |||| ||||| |||||||||| ||||| ||||||  |||||||||
seq2  AATATTTCTTCACATAAAATAAAAATTGAGCT-ATACATATTATTTCATA  99

seq1  ATGTAAGAAACT-GGCTTATTGTATAGGTTATATTAA-CCATTCTTCAAA  145
      |||||||||||| |||||||||||||||||||||||| ||||||||||||
seq2  ATGTAAGAAACTGGGCTTATTGTATAGGTTATATTAACCCATTCTTCAAA  149

seq1  ATTGTTAGTAGTTTATAAATAAAGGTTCAATGTAATTAACGGAAGCGTTT  195
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TGTTAGTAGTTTATAAATAAAGGTTCAATGTAATTAACGGAAGCGTTT  198

seq1  AATCTCCTGGAGGTAGCCCATAGAGTAAGGCCACCAAAATGTCTGTAGTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTGGAGGTAGCCCATAGAGTAAGGCCACCAAAATGTCTGTAGTT  248

seq1  TAAAATAGTTCAGCAACAAGAGTCATTATGCATGCAGTCTTATAATAGAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTTCAGCAACAAGAGTCATTATGCATGCAGTCTTATAATAGAA  298

seq1  AGTTTATTATAAACACGTAGAAACAGCCAAAAGTCACAAACAATTTAGAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTATAAACACGTAGAAACAGCCAAAAGTCACAAACAATTTAGAG  348

seq1  CATTATTTACTTATAATTTTCATAGAAAAGAAATAGAAATATATAACTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTTACTTATAATTTTCATAGAAAAGAAATAGAAATATATAACTAT  398

seq1  CAAACAAATAATGAAGTTAATATTAGAATGTAGTCACACATAAGGGCCTG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAATAATGAAGTTAATATTAGAATGTAGTCACACATAAGGGCCTG  448

seq1  TAGTGATGCGCATTGTGAGATCTAACCAGAAGCACAGCATTCATCTTCAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATGCGCATTGTGAGATCTAACCAGAAGCACAGCATTCATCTTCAA  498

seq1  ATTGTCAACTGGCCACCAGGTCTTAGCCCCTGTGATGGTTTGTATATCCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAACTGGCCACCAGGTCTTAGCCCCTGTGATGGTTTGTATATCCT  548

seq1  TGGACCAGGGAGTGGCACCATTTGGAGATGTGGCCTTGTTGGAATAGGTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCAGGGAGTGGCACCATTTGGAGATGTGGCCTTGTTGGAATAGGTG  598

seq1  TGACCTGGTTGGAGTAGGTGTGCCACTGTGGGTGTGGGCATAAGATCCTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGGTTGGAGTAGGTGTGCCACTGTGGGTGTGGGCATAAGATCCTC  648

seq1  ACTCTAGTTGCCTGGAAGTAAGTCTTCCACTAGCTGCCTTTGGATGAAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGTTGCCTGGAAGTAAGTCTTCCACTAGCTGCCTTTGGATGAAGA  698

seq1  TGTAGAACTCTCAGCTCTGCCTGAGCCATGCCTGCCTGGACACTGCCATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACTCTCAGCTCTGCCTGAGCCATGCCTGCCTGGACACTGCCATG  748

seq1  CTCCCACCTTGATGATAATGAACTGAACCTCTGAACCTGTAAGCCAGCCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACCTTGATGATAATGAACTGAACCTCTGAACCTGTAAGCCAGCCC  798

seq1  CAATTAAATTTTGTTTTAAAAGACTTGCTTTGGTCATGGTATCTGTTCAC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAATTTTGTTTTAAAAGACTTGCTTTGGTCATGGTATCTGTTCAC  848

seq1  AGCAGTAACACCCTAACTAAGGCAGCCACCAAGGAGTGCCTCTTCAGCGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTAACACCCTAACTAAGGCAGCCACCAAGGAGTGCCTCTTCAGCGA  898

seq1  GAAGCAACCTATAAAGCTTTGCCTCCAGCTAGGTGAACTATGAAGACATT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAACCTATAAAGCTTTGCCTCCAGCTAGGTGAACTATGAAGACATT  948

seq1  TGCAGTCCGTCAAATGCATAGGAGAAATGAATCATTGATGAGGCTTAGCC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCCGTCAAATGCATAGGAGAAATGAATCATTGATGAGGCTTAGCC  998

seq1  CTGGCCATGCTTACCTAGCGGCTACATATGGTAAGAATCCCCACTTAAGA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCATGCTTACCTAGCGGCTACATATGGTAAGAATCCCCACTTAAGA  1048

seq1  AATTAACACAAAATACAACAGTTAACTTCCCTGTCATTTCAAATGAAGCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACACAAAATACAACAGTTAACTTCCCTGTCATTTCAAATGAAGCA  1098

seq1  ACACGGTTCTCTATGTTTCATTGCAGGAGTTAACAGAATTC  1136
      |||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGTTCTCTATGTTTCATTGCAGGAGTTAACAGAATTC  1139


seq1: chr16_66000630_66001811
seq2: B6Ng01-331E20.g_67_1252

seq1  GAATTCATGTTTCTTAGCTTCTATAATTTAAAAATAAATAAATAAAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTTCTTAGCTTCTATAATTTAAAAATAAATAAATAAAATAA  50

seq1  AACCAATCCCGTTGTCTACTGTGGGGATTTTTATGCTGAGAAAGTGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATCCCGTTGTCTACTGTGGGGATTTTTATGCTGAGAAAGTGAACT  100

seq1  ACAATTTACAACTGAAGAAACTCGAACTTCCATGAATTCAAGGCAAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTACAACTGAAGAAACTCGAACTTCCATGAATTCAAGGCAAACAT  150

seq1  TTCTTGTTTGAGGAGCTTATTTTTAAGCACTTAAATACTTCAAAATATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTTTGAGGAGCTTATTTTTAAGCACTTAAATACTTCAAAATATAA  200

seq1  CCTAGTTGATGATTTTCATAAACTCATCTTCCGAGGTTTTCTCTTGACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTGATGATTTTCATAAACTCATCTTCCGAGGTTTTCTCTTGACCC  250

seq1  AGGTTTTGTCTATCAAAGTAATATTAATTGGATTTCATCTTTTCCTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTGTCTATCAAAGTAATATTAATTGGATTTCATCTTTTCCTTTCA  300

seq1  TGACAACACAAGGTGATCAGTCCACCTGTCTGAATATCTATCTACCTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACACAAGGTGATCAGTCCACCTGTCTGAATATCTATCTACCTTTC  350

seq1  AGGAGACTGTGCATCAAAGAGTGTACAATAACTCAAGGGAATGAGCTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGACTGTGCATCAAAGAGTGTACAATAACTCAAGGGAATGAGCTAAG  400

seq1  TAACAGATGAAGCTGTCTGCAGGACCGGGGTCCTTTCATGGTTGCAGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGATGAAGCTGTCTGCAGGACCGGGGTCCTTTCATGGTTGCAGTAT  450

seq1  TTCATACAATTTCGTTGGCAAATTGCCTACCAGATGGGCTACAGCCCAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACAATTTCGTTGGCAAATTGCCTACCAGATGGGCTACAGCCCAGG  500

seq1  AGGGAGGTTTACTGCTCTACTCCCCAGAATGGTGTCCCCTCGCATTTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGTTTACTGCTCTACTCCCCAGAATGGTGTCCCCTCGCATTTTCT  550

seq1  CCCCTTTAGGTTTGAATGTCAGTTGCTTGCAGAGGGGAAAAGAAAGGGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTAGGTTTGAATGTCAGTTGCTTGCAGAGGGGAAAAGAAAGGGCT  600

seq1  CGCACTTGGGATTCTTGAGTGACTGCCAGAAAAGAATTGTCTCTGAGAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTTGGGATTCTTGAGTGACTGCCAGAAAAGAATTGTCTCTGAGAAT  650

seq1  TGCCATTTTCCAGGTTCCCATAGTATGCAGTAAACCCAATTATCCAAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATTTTCCAGGTTCCCATAGTATGCAGTAAACCCAATTATCCAAGCT  700

seq1  AAGGGTTAGAAACCGGAAACAGGGGTGGGGGCATCTTATAACTATCAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTTAGAAACCGGAAACAGGGGTGGGGGCATCTTATAACTATCAACA  750

seq1  TGGATATCTTCTGAGAGGCAGCAATAAAAGGATCTATTACACTTCAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATCTTCTGAGAGGCAGCAATAAAAGGATCTATTACACTTCAGTTG  800

seq1  TTAAACTTAAGATACACTATTGATATTCATAAAATAATTGCAGATCGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTAAGATACACTATTGATATTCATAAAATAATTGCAGATCGCTG  850

seq1  CAGTCACTCAGAGTCTAGGCCACAAGATACTGAC-AATTTTCCTGTATTG  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGTCACTCAGAGTCTAGGCCACAAGATACTGACAAATTTTCCTGTATTG  900

seq1  GTCACAGGTATTTGCTTAAGGTCTTTTTACTACTGAGATTAGGTCAAGGG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGTATTTGCTTAAGGTCTTTTTACTACTGAGATTAGGTCAAGGG  950

seq1  TTTAGAAAG-TGTGGGACACTAGACAAACATCCACTGCCAATTACTTTCG  998
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAAGTTGTGGGACACTAGACAAACATCCACTGCCAATTACTTTCG  1000

seq1  ACGTCCATAGCTGCTTAATGGTTTTCAAGTCCCT-GGAAACAATGAAAAA  1047
      |||||||||||||||||||||||||||||||||| |||||||   |||||
seq2  ACGTCCATAGCTGCTTAATGGTTTTCAAGTCCCTGGGAAACATGAAAAAA  1050

seq1  AAGTGGCATGTACAATTTATATGAAATTTAAATTTCACTGTTCATAAATA  1097
      ||||||||||||| ||||||||||| || || |||||||||||||||   
seq2  AAGTGGCATGTAC-ATTTATATGAAGTTAAATTTTCACTGTTCATAA--T  1097

seq1  AATCCGCACTGGAACTCATCCAGTGAG-CAGTCCTTTCAAATGTGACCAA  1146
      ||||||||||| ||||||| ||||||| |||||||||| ||||||||| |
seq2  AATCCGCACTGTAACTCAT-CAGTGAGCCAGTCCTTTC-AATGTGACC-A  1144

seq1  AAAGACAT--GCAAAACCTCAAACATTT----GATATTTGGT  1182
      || |||||   |||||||||||||||||     |||||||||
seq2  AATGACATTGTCAAAACCTCAAACATTTTTGATATATTTGGT  1186


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