BAC Information

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BAC

Clone NameB6Ng01-331N04
Chromosome16 (Build37)
Map Location 37,471,268 - 37,577,905
singlet/doubletdoublet
Overlap geneGtf2e1, Rabl3
Upstream geneCasr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l
Downstream geneHgd, Ndufb4, LOC100043709, Fstl1, LOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331N04.bB6Ng01-331N04.g
ACCGA118092GA118093
length1,1431,055
definitionB6Ng01-331N04.b B6Ng01-331N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,471,268 - 37,472,419)(37,576,855 - 37,577,905)
sequence
gaattccaactctgcttcaaacacaaaatagctgagtaaggtattctaat
ccctgactttcattcatagttggtaggttctttactttacatatgaaaag
acaatactgggctatatatatgatctgacctgtatgtatggctggggaga
gaacaatattgctttacctaaatagcaaatctgtcacttttccctagagg
agttcttgtttcttgtagtttgcacctctatactatgcattttcctggct
attggaacatttgagttacttcagaagggtaagtgagagtagccccaaac
acgtcagcacacatattgtagctatccttttcatggaaagtggagagact
aaattttcttaagctagtgagttcatctatttaaataaaatatctatgtg
tgaaacaaataaaaacctttgccaattttcatattcaatgtcccctcgtc
tgtggggtgggtgtccctgatgtgctagataaaattgaactcagcctgta
tcacctgcagcatgtagcttataactctgatgaataggacacactatgct
atgttatgaagatgtctgtgaatagatgtatatccttggtagcttctgaa
tgcccagaatctggagtaacatgtgaccccagcaactgttggttgactct
tagcctccaccatacccttttcctttcccactgtagggcttgtcagatca
cttcctgtgatgcttttaatgtggtccctaagagttcatgccagcactgg
aaatgccaatcctcaatctcatgtgaatggtatgtagaagaaaggcatat
tgaaaggcagagccagcatagttagggtcctttcatgtcatgcctcccag
aatgttatgatgcaagtcaacggtcctcatcacatgtcacatgctgacaa
gacactaaaaacattcatttggactttccagcctccatttcataagccaa
aaaacaaaaaaaagtctactctttatcaatccctatacttggatgcttgg
tacaatgacagaaatgactatgctgtgtcccttcctcagcgattgcttgc
ttatggtcagaaaatataagaattctgaaaaatgtgtcttcgacattcaa
actatattttttagcttggaatttttttttatacaggaattct
gaattcttgcatgcctgagtttatgagaaccttggagcttcattacctac
tgctaactttctctggtggttaaaaagacaacacacaggagcctatgagt
gacagggaacagcctcggtgctgtgcttttctacagtgcctgcttgaagg
caggtttatgtgtttcacagccgagtgtggtggcacatgccttttaaccc
cagcacttgggaggcagaggcaggcggatttctgagtttgaagccagcct
ggtctacagagtgagttccaggacagccagggctacacagagaaactctg
tcttgaaaaaccctatataaatattaataagtaaaattttaaaaaaagtg
tttccctgcgtgaaagacaaaaggaatcagaaaagcctggctggataaga
tttgatttaggtttctggaaatgtttaaatcaagattaacctattaatac
gatttaggaagttctcctatgtaggctaacttaatttccttccttttcta
cttttataacaatgattcaataaattatttgctttgcaattactatgtca
ggtattgtgaggtaaacatacagcggatgagaataatgaaaacaaaacaa
aacaaaacacaggtatggatgaccttgattctttgtgtaatggcttgcca
ttttaattaaccgaagcaaatatatatatatatttgacagagaaatggag
ggtcagtacactgtatgtggggcagaaatggaggggcagtgtgtgtgggg
cagtgtggctgaacttaggagtgggttgtgtctcctactgagaagccttc
caggaacaggagtgttgggcagattcttgaagcagaggacacagaggtta
gctgtataggagagccacttttaataacacacccagcggaaggatgacac
tgtcatgttggggatatgtgagccaagaagcaagatttgaagctcgcaag
gcatcccctttgctttctcatctagcaaggttggaaacggcactctcctg
caatgatccccagaaaaggtcttaagggaaagcatcaaaggcaagcattt
ctaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37471268_37472419
seq2: B6Ng01-331N04.b_45_1187

seq1  GAATTCCAACTCTGCTTCAAACACAAAATAGCTGAGTAAGGTATTCTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTCTGCTTCAAACACAAAATAGCTGAGTAAGGTATTCTAAT  50

seq1  CCCTGACTTTCATTCATAGTTGGTAGGTTCTTTACTTTACATATGAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGACTTTCATTCATAGTTGGTAGGTTCTTTACTTTACATATGAAAAG  100

seq1  ACAATACTGGGCTATATATATGATCTGACCTGTATGTATGGCTGGGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACTGGGCTATATATATGATCTGACCTGTATGTATGGCTGGGGAGA  150

seq1  GAACAATATTGCTTTACCTAAATAGCAAATCTGTCACTTTTCCCTAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATATTGCTTTACCTAAATAGCAAATCTGTCACTTTTCCCTAGAGG  200

seq1  AGTTCTTGTTTCTTGTAGTTTGCACCTCTATACTATGCATTTTCCTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGTTTCTTGTAGTTTGCACCTCTATACTATGCATTTTCCTGGCT  250

seq1  ATTGGAACATTTGAGTTACTTCAGAAGGGTAAGTGAGAGTAGCCCCAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAACATTTGAGTTACTTCAGAAGGGTAAGTGAGAGTAGCCCCAAAC  300

seq1  ACGTCAGCACACATATTGTAGCTATCCTTTTCATGGAAAGTGGAGAGACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCAGCACACATATTGTAGCTATCCTTTTCATGGAAAGTGGAGAGACT  350

seq1  AAATTTTCTTAAGCTAGTGAGTTCATCTATTTAAATAAAATATCTATGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTTAAGCTAGTGAGTTCATCTATTTAAATAAAATATCTATGTG  400

seq1  TGAAACAAATAAAAACCTTTGCCAATTTTCATATTCAATGTCCCCTCGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAAATAAAAACCTTTGCCAATTTTCATATTCAATGTCCCCTCGTC  450

seq1  TGTGGGGTGGGTGTCCCTGATGTGCTAGATAAAATTGAACTCAGCCTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGTGGGTGTCCCTGATGTGCTAGATAAAATTGAACTCAGCCTGTA  500

seq1  TCACCTGCAGCATGTAGCTTATAACTCTGATGAATAGGACACACTATGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTGCAGCATGTAGCTTATAACTCTGATGAATAGGACACACTATGCT  550

seq1  ATGTTATGAAGATGTCTGTGAATAGATGTATATCCTTGGTAGCTTCTGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTATGAAGATGTCTGTGAATAGATGTATATCCTTGGTAGCTTCTGAA  600

seq1  TGCCCAGAATCTGGAGTAACATGTGACCCCAGCAACTGTTGGTTGACTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGAATCTGGAGTAACATGTGACCCCAGCAACTGTTGGTTGACTCT  650

seq1  TAGCCTCCACCATACCCTTTTCCTTTCCCACTGTAGGGCTTGTCAGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTCCACCATACCCTTTTCCTTTCCCACTGTAGGGCTTGTCAGATCA  700

seq1  CTTCCTGTGATGCTTTTAATGTGGTCCCTAAGAGTTCATGCCAGCACTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGTGATGCTTTTAATGTGGTCCCTAAGAGTTCATGCCAGCACTGG  750

seq1  AAATGCCAATCCTCAATCTCATGTGAATGGTATGTAGAAGAAAGGCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCCAATCCTCAATCTCATGTGAATGGTATGTAGAAGAAAGGCATAT  800

seq1  TGAAAGGCAGAGCCAGCATAGTTAGGGTCCTTTCATGTCATGCCTCCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGCAGAGCCAGCATAGTTAGGGTCCTTTCATGTCATGCCTCCCAG  850

seq1  AATGTTATGATGCAAGTCAACGGTCCTCATCACATGTCACATGCTGACAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTATGATGCAAGTCAACGGTCCTCATCACATGTCACATGCTGACAA  900

seq1  GACACTAAAAACATTCATTTGGACTTTCCAGCCTCCATTTCATAAGCCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTAAAAACATTCATTTGGACTTTCCAGCCTCCATTTCATAAGCCAA  950

seq1  AAAACAAAAAAAAAGTCTACTCTTTATCAATCCCTTATACTTGGATGCTT  1000
      ||||| |||||||||||||||||||||||||||| |||||||||||||||
seq2  AAAAC-AAAAAAAAGTCTACTCTTTATCAATCCC-TATACTTGGATGCTT  998

seq1  GGTTACAATGACAGAAAATGGACTATGCTGTGTCCCTTCCTCAGCGGATT  1050
      || ||||||||||||||   ||||||||||||||||||||||||||   |
seq2  GG-TACAATGACAGAAA--TGACTATGCTGTGTCCCTTCCTCAGCG--AT  1043

seq1  TGCTTGCTTATGGGTCAG-AAATAT-AGAATTCTGAAAAATGTGTCTTCA  1098
      ||||||||||| |||||| |||||| ||||||||||||||||||||||| 
seq2  TGCTTGCTTAT-GGTCAGAAAATATAAGAATTCTGAAAAATGTGTCTTCG  1092

seq1  ACATTCAAACTATATTTTTAGGTTTGGATATTTTTTTTTTAATACAGGAT  1148
      |||||||||||||||||||  | ||||| ||||||||||  |||||||| 
seq2  ACATTCAAACTATATTTTTTAGCTTGGA-ATTTTTTTTT--ATACAGGAA  1139

seq1  TTCT  1152
      ||||
seq2  TTCT  1143

seq1: chr16_37576855_37577905
seq2: B6Ng01-331N04.g_69_1122 (reverse)

seq1  TTAG-AATGCTTGCTTTTGATGCTTT-CCTTTAGACCTTTTCTTGGGGAT  48
      |||| ||||||||| ||||||||||| |||| |||||||||| |||||||
seq2  TTAGAAATGCTTGCCTTTGATGCTTTCCCTTAAGACCTTTTC-TGGGGAT  49

seq1  C-TTCCAGGGAGAGTGCCG-TTCCAACC-TGCTAGATGAGAAAGC-AAGG  94
      | || || ||||||||||| |||||||| |||||||||||||||| ||||
seq2  CATTGCA-GGAGAGTGCCGTTTCCAACCTTGCTAGATGAGAAAGCAAAGG  98

seq1  GGATGCC-TGCGAGCTTCAAATCTTGCTTCTTGGCTCACATATCCCCAAC  143
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCTTGCGAGCTTCAAATCTTGCTTCTTGGCTCACATATCCCCAAC  148

seq1  ATTGACAGTGTCATCCTTCCGCTGGGTGTGTTATTAAAAGTGGCTCTCCT  193
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-TGACAGTGTCATCCTTCCGCTGGGTGTGTTATTAAAAGTGGCTCTCCT  197

seq1  ATACAGCTAACCTCTGTGTCCTCTGCTTCAAGAATCTGCCCAAACACTCC  243
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATACAGCTAACCTCTGTGTCCTCTGCTTCAAGAATCTGCCC-AACACTCC  246

seq1  TGTTCCTGGAAGGCTTCTCAGTAGGAGACACAACCCACTCCTAAGTTCAG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTGGAAGGCTTCTCAGTAGGAGACACAACCCACTCCTAAGTTCAG  296

seq1  CCACACTGCCCCACACACACTGCCCCTCCATTTCTGCCCCACATACAGTG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACTGCCCCACACACACTGCCCCTCCATTTCTGCCCCACATACAGTG  346

seq1  TACTGACCCTCCATTTCTCTGTCAAATATATATATATATTTGCTTCGGTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGACCCTCCATTTCTCTGTCAAATATATATATATATTTGCTTCGGTT  396

seq1  AATTAAAATGGCAAGCCATTACACAAAGAATCAAGGTCATCCATACCTGT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATGGCAAGCCATTACACAAAGAATCAAGGTCATCCATACCTGT  446

seq1  GTTTTGTTTTGTTTTGTTTTCATTATTCTCATCCGCTGTATGTTTACCTC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGTTTTGTTTTCATTATTCTCATCCGCTGTATGTTTACCTC  496

seq1  ACAATACCTGACATAGTAATTGCAAAGCAAATAATTTATTGAATCATTGT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACCTGACATAGTAATTGCAAAGCAAATAATTTATTGAATCATTGT  546

seq1  TATAAAAGTAGAAAAGGAAGGAAATTAAGTTAGCCTACATAGGAGAACTT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGTAGAAAAGGAAGGAAATTAAGTTAGCCTACATAGGAGAACTT  596

seq1  CCTAAATCGTATTAATAGGTTAATCTTGATTTAAACATTTCCAGAAACCT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATCGTATTAATAGGTTAATCTTGATTTAAACATTTCCAGAAACCT  646

seq1  AAATCAAATCTTATCCAGCCAGGCTTTTCTGATTCCTTTTGTCTTTCACG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAATCTTATCCAGCCAGGCTTTTCTGATTCCTTTTGTCTTTCACG  696

seq1  CAGGGAAACACTTTTTTTAAAATTTTACTTATTAATATTTATATAGGGTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAACACTTTTTTTAAAATTTTACTTATTAATATTTATATAGGGTT  746

seq1  TTTCAAGACAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGACAGAGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  796

seq1  TGTAGACCAGGCTGGCTTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCTTCAAACTCAGAAATCCGCCTGCCTCTGCCTCCC  846

seq1  AAGTGCTGGGGTTAAAAGGCATGTGCCACCACACTCGGCTGTGAAACACA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGGTTAAAAGGCATGTGCCACCACACTCGGCTGTGAAACACA  896

seq1  TAAACCTGCCTTCAAGCAGGCACTGTAGAAAAGCACAGCACCGAGGCTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTGCCTTCAAGCAGGCACTGTAGAAAAGCACAGCACCGAGGCTGT  946

seq1  TCCCTGTCACTCATAGGCTCCTGTGTGTTGTCTTTTTAACCACCAGAGAA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTCACTCATAGGCTCCTGTGTGTTGTCTTTTTAACCACCAGAGAA  996

seq1  AGTTAGCAGTAGGTAATGAAGCTCCAAGGTTCTCATAAACTCAGGCATGC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGCAGTAGGTAATGAAGCTCCAAGGTTCTCATAAACTCAGGCATGC  1046

seq1  AAGAATTC  1051
      ||||||||
seq2  AAGAATTC  1054