BAC Information

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BAC

Clone NameB6Ng01-333B06
Chromosome16 (Build37)
Map Location 86,548,646 - 86,711,344
singlet/doubletdoublet
Overlap genenone
Upstream geneCyyr1, LOC100039994, LOC622000, Adamts1, Adamts5, LOC100040025, LOC100039780
Downstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333B06.bB6Ng01-333B06.g
ACCGA118992GA118993
length1,0541,200
definitionB6Ng01-333B06.b B6Ng01-333B06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,710,292 - 86,711,344)(86,548,646 - 86,549,851)
sequence
gaattctgttatccatctctcctcccagatagtcataagcgctggaatta
cacattttgagtttttatataaattatggggatttaaactcaggtctcag
ccataggtctctgcattcactgccatttgttgcaaagagagacattcaga
ttagactgtgctttggtttggctaaatcaaactaatgaggtgtactgtaa
ggactatgacctcctaaagcaagggattttgaccaagtttaaagtaccag
atgaaaccaatttaaaatatttaattacaattaattagagttatagtcag
gcatgttggtgtaaatctttaatcccaggactctggaggcagagcccacc
tactccctgagtttgatgctagctcaatctacaaagaaaatgtttgaaaa
cagcaagggctacacagagtaacggtgcctcaaaagtaaacaaaacaaaa
agaaacaaaacaaaattagagttaggtggactgattaaatttcaaaaggt
aagctttatagagaagtagaaatatttgcacttctatgacttatctgaac
taaaaattttaaacatggaatcaatttgtttgaatcaaaatcaagtgtta
ttaatttttaaatttgttggtaatacctgcatgcagctgatgtgctttga
gtaaacccctgcccctttcctgctctctgtcaccttctacccaccagagc
ttctccctcccagcttcatgtgctctccttccaaactgaagtgctttttc
acttagtgttgcctctctgtacattcagcaatgtcagttactccgtataa
ccacatataagaagtcctataattctggtctcctccttatctcctaatgg
gagctaacaacagaaacctacatcataaccttaattgaagataaaacaac
aacaaacaaacaaaaaccaaaaatggtgatcaaagaaggtgatcttaacc
ctggaagtaaaattctagttaatacagtgttatggaaaaaagtgtaggtg
gtaagtaaacattagatggctgtttgtgtgtggtgtatgtgtgtttgtgt
gtgt

gaattcttttaaagagaagttggaaaatgctccctagacaggcacaaata
gaaatttcattttttccattacttccatatcttctttagtagccataggc
aatcaaagcaggaatcttaccaaatacacatcatatagtagtcctcaagg
aagagtatcttctcagcagttttcactatggcttgactttcattttcttg
catcctcttgtcttactgattatgatggaaccaccatcagggaaggaaat
gagtctacataaagaggggatgcacacattccaggtccatcttattttaa
gtatgttatgtaattagaactcactcacacatctagtaggaggaatggat
ggtatttaactgtgtgctgatgacagtttcaggtgacagacaaaggaagt
gtacagactatgtcacctaacatgttgggcagggtttcaaactttggtat
tttgagaatatctcaggaatgagtcgtcttgatgggttttattcctatat
ttaaaatatgaatgtatgggcagttcagagcattattatttgataaattt
aaaataaaaaattagttgaccaatagactgagatgttagcacaataacaa
acttccccaaattttataccaatttaacttttcagaagtacacgttgaaa
atgttgacctcctaattctgtttatctaggtccacatttcagatattatg
tgtgctttttagttacttttttttttttaacagtacagacctggaagttc
ttttgacataacactatctaattcattcaatgaagtcacaattactctga
aacctaatctacacacagaccccacaaagaagaaaggagaacttcagaac
caatttcacatatgaatatcaatattaaaattgccagtaaaattctagca
aaatgaattaaagaacacatcaaaccattattcaccatgatcaaataggc
ttcatcctagggaaacaaagttcgctcagtatatgaaatccattaatgta
atcactatataaacaactcaaaggaaaaaaaatcaccgcacttctcatta
gatgctggaaaggcatttgacaaagtacatatccctacatgataaaggta
tgaagaaatcagtgattcaggccatactaaactggataaagctatatgta
gcaatcaatagacaaaattaaagtaatgggagaattcttgaagcagtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_86710292_86711344
seq2: B6Ng01-333B06.b_47_1100 (reverse)

seq1  ACACACACAAACACACATACA-CACACACAAACAGCCATCTAATGTTTAC  49
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  ACACACACAAACACACATACACCACACACAAACAGCCATCTAATGTTTAC  50

seq1  TTACCACCTACACTTTTTTCCATAACACTGTATTAACTAGAATTTTACTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACCTACACTTTTTTCCATAACACTGTATTAACTAGAATTTTACTT  100

seq1  CCAGGGTTAAGATCACCTTCTTTGATCACCATTTTTGGTTTTTGTTTGTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTAAGATCACCTTCTTTGATCACCATTTTTGGTTTTTGTTTGTT  150

seq1  TGTTGTTGTTTTATCTTCAATTAAGGTTATGATGTAGGTTTCTGTTGTTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTTTATCTTCAATTAAGGTTATGATGTAGGTTTCTGTTGTTA  200

seq1  GCTCCCATTAGGAGATAAGGAGGAGACCAGAATTATAGGACTTCTTATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCATTAGGAGATAAGGAGGAGACCAGAATTATAGGACTTCTTATAT  250

seq1  GTGGTTATACGGAGTAACTGACATTGCTGAATGTACAGAGAGGCAACACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTATACGGAGTAACTGACATTGCTGAATGTACAGAGAGGCAACACT  300

seq1  AAGTGAAAAAGCACTTCAGTTTGGAAGGAGAGCACATGAAGCTGGGAGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAAAAGCACTTCAGTTTGGAAGGAGAGCACATGAAGCTGGGAGGG  350

seq1  AGAAGCTCTGGTGGGTAGAAGGTGACAGAGAGCAGGAAAGGGGCAGGGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTCTGGTGGGTAGAAGGTGACAGAGAGCAGGAAAGGGGCAGGGGT  400

seq1  TTACTCAAAGCACATCAGCTGCATGCAGGTATTACCAACAAATTTAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCAAAGCACATCAGCTGCATGCAGGTATTACCAACAAATTTAAAAA  450

seq1  TTAATAACACTTGATTTTGATTCAAACAAATTGATTCCATGTTTAAAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACACTTGATTTTGATTCAAACAAATTGATTCCATGTTTAAAATT  500

seq1  TTTAGTTCAGATAAGTCATAGAAGTGCAAATATTTCTACTTCTCTATAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCAGATAAGTCATAGAAGTGCAAATATTTCTACTTCTCTATAAA  550

seq1  GCTTACCTTTTGAAATTTAATCAGTCCACCTAACTCTAATTTTGTTTTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACCTTTTGAAATTTAATCAGTCCACCTAACTCTAATTTTGTTTTGT  600

seq1  TTCTTTTTGTTTTGTTTACTTTTGAGGCACCGTTACTCTGTGTAGCCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTGTTTTGTTTACTTTTGAGGCACCGTTACTCTGTGTAGCCCTT  650

seq1  GCTGTTTTCAAACATTTTCTTTGTAGATTGAGCTAGCATCAAACTCAGGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTCAAACATTTTCTTTGTAGATTGAGCTAGCATCAAACTCAGGG  700

seq1  AGTAGGTGGGCTCTGCCTCCAGAGTCCTGGGATTAAAGATTTACACCAAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGGGCTCTGCCTCCAGAGTCCTGGGATTAAAGATTTACACCAAC  750

seq1  ATGCCTGACTATAACTCTAATTAATTGTAATTAAATATTTTAAATTGGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGACTATAACTCTAATTAATTGTAATTAAATATTTTAAATTGGTT  800

seq1  TCATCTGGTACTTTAAACTTGGTCAAAATCCCTTGCTTTAGGAGGTCATA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGTACTTTAAACTTGGTCAAAATCCCTTGCTTTAGGAGGTCATA  850

seq1  GTCCTTACAGTACACCTCATTAGTTTGATTTAGCCAAACCAAAGCACAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTACAGTACACCTCATTAGTTTGATTTAGCCAAACCAAAGCACAGT  900

seq1  CTAATCTGAATGTCTCTCTTTGCAACAAATGGCAGTGAATGCAGAGACCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTGAATGTCTCTCTTTGCAACAAATGGCAGTGAATGCAGAGACCT  950

seq1  ATGGCTGAGACCTGAGTTTAAATCCCCATAATTTATATAAAAACTCAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGAGACCTGAGTTTAAATCCCCATAATTTATATAAAAACTCAAAA  1000

seq1  TGTGTAATTCCAGCGCTTATGACTATCTGGGAGGAGAGATGGATAACAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATTCCAGCGCTTATGACTATCTGGGAGGAGAGATGGATAACAGA  1050

seq1  ATTC  1053
      ||||
seq2  ATTC  1054


seq1: chr16_86548646_86549851
seq2: B6Ng01-333B06.g_65_1264

seq1  GAATTCTTTTAAAGAGAAGTTGGAAAATGCTCCCTAGACAGGCACAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAAGAGAAGTTGGAAAATGCTCCCTAGACAGGCACAAATA  50

seq1  GAAATTTCATTTTTTCCATTACTTCCATATCTTCTTTAGTAGCCATAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTTCATTTTTTCCATTACTTCCATATCTTCTTTAGTAGCCATAGGC  100

seq1  AATCAAAGCAGGAATCTTACCAAATACACATCATATAGTAGTCCTCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAAGCAGGAATCTTACCAAATACACATCATATAGTAGTCCTCAAGG  150

seq1  AAGAGTATCTTCTCAGCAGTTTTCACTATGGCTTGACTTTCATTTTCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTATCTTCTCAGCAGTTTTCACTATGGCTTGACTTTCATTTTCTTG  200

seq1  CATCCTCTTGTCTTACTGATTATGATGGAACCACCATCAGGGAAGGAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCTTGTCTTACTGATTATGATGGAACCACCATCAGGGAAGGAAAT  250

seq1  GAGTCTACATAAAGAGGGGATGCACACATTCCAGGTCCATCTTATTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTACATAAAGAGGGGATGCACACATTCCAGGTCCATCTTATTTTAA  300

seq1  GTATGTTATGTAATTAGAACTCACTCACACATCTAGTAGGAGGAATGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTATGTAATTAGAACTCACTCACACATCTAGTAGGAGGAATGGAT  350

seq1  GGTATTTAACTGTGTGCTGATGACAGTTTCAGGTGACAGACAAAGGAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTAACTGTGTGCTGATGACAGTTTCAGGTGACAGACAAAGGAAGT  400

seq1  GTACAGACTATGTCACCTAACATGTTGGGCAGGGTTTCAAACTTTGGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGACTATGTCACCTAACATGTTGGGCAGGGTTTCAAACTTTGGTAT  450

seq1  TTTGAGAATATCTCAGGAATGAGTCGTCTTGATGGGTTTTATTCCTATAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAATATCTCAGGAATGAGTCGTCTTGATGGGTTTTATTCCTATAT  500

seq1  TTAAAATATGAATGTATGGGCAGTTCAGAGCATTATTATTTGATAAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATATGAATGTATGGGCAGTTCAGAGCATTATTATTTGATAAATTT  550

seq1  AAAATAAAAAATTAGTTGACCAATAGACTGAGATGTTAGCACAATAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAAAATTAGTTGACCAATAGACTGAGATGTTAGCACAATAACAA  600

seq1  ACTTCCCCAAATTTTATACCAATTTAACTTTTCAGAAGTACACGTTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCCCAAATTTTATACCAATTTAACTTTTCAGAAGTACACGTTGAAA  650

seq1  ATGTTGACCTCCTAATTCTGTTTATCTAGGTCCACATTTCAGATATTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGACCTCCTAATTCTGTTTATCTAGGTCCACATTTCAGATATTATG  700

seq1  TGTGCTTTTTAGTTACTTTTTTTTTTTTAACAGTACAGACCTGGAAGT--  748
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TGTGCTTTTTAGTTACTTTTTTTTTTTTAACAGTACAGACCTGGAAGTTC  750

seq1  CTTTGACATAACACTATCTAATTCATTCAATGAAGTCACAATTACTCTGA  798
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACATAACACTATCTAATTCATTCAATGAAGTCACAATTACTCTGA  800

seq1  AACCTAATCTACACAAAGACCC----AAAAAGAAA-GAGAACTTCAG-AC  842
      ||||||||||||||| ||||||    || |||||| ||||||||||| ||
seq2  AACCTAATCTACACACAGACCCCACAAAGAAGAAAGGAGAACTTCAGAAC  850

seq1  CAATTTCACATATGAATATCAATATTAAAATTGCCAGTAAAATTCTAGCA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTCACATATGAATATCAATATTAAAATTGCCAGTAAAATTCTAGCA  900

seq1  AAATGAATTAAAGAACACATCAAAACCATTATTCACCATGATCAAATAGG  942
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AAATGAATTAAAGAACACATC-AAACCATTATTCACCATGATCAAATAGG  949

seq1  CTTCATCCTAGGGACACAAAGTTCGCTCAGTATATGAAAATCCATTAATG  992
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CTTCATCCTAGGGAAACAAAGTTCGCTCAGTATATG-AAATCCATTAATG  998

seq1  TAATCCACTATATAAACAAACTCAAAGGAAAAAAAAATCACATACACTTC  1042
      |||| |||||||||||| |||||||||| ||||||||||||   ||||||
seq2  TAAT-CACTATATAAAC-AACTCAAAGG-AAAAAAAATCAC-CGCACTTC  1044

seq1  TCATTAGATGCTGGAAAAGCATTTGACAAAGTACAATATCCCTACATGAT  1092
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  TCATTAGATGCTGGAAAGGCATTTGACAAAGTAC-ATATCCCTACATGAT  1093

seq1  AAAAGTATTGAAGAAATCAGTGATTCAAGGCCCATACTTAAACATGATAA  1142
      ||| ||| |||||||||||||||||||  | |||||| |||||  ||| |
seq2  AAAGGTA-TGAAGAAATCAGTGATTCA--GGCCATAC-TAAACTGGAT-A  1138

seq1  AAGCTATATGTAGCAAATCAATAGACAATATAAAATTTAATGGAGAGATA  1192
      |||||||||||||| ||||||||||||| || ||| | |  ||||| || 
seq2  AAGCTATATGTAGC-AATCAATAGACAAAATTAAAGTAATGGGAGA-ATT  1186

seq1  CTTGAAGCAGTCCC  1206
      ||||||||||||||
seq2  CTTGAAGCAGTCCC  1200


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