BAC Information

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BAC

Clone NameB6Ng01-334A01
Chromosome16 (Build37)
Map Location 66,543,990 - 66,673,950
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneChmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-334A01.bB6Ng01-334A01.g
ACCGA119617GA119618
length6121,208
definitionB6Ng01-334A01.b B6Ng01-334A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,673,339 - 66,673,950)(66,543,990 - 66,545,191)
sequence
gaattccagtatctgattttggtgagaattcagaaagttataggtaggac
aacaagttatcctgtaagtcattgatggtattggttatcacaaagggatg
agaagaaaagacagaatcgaaatttgctacaaaaaggaagaagcacacag
tcttctgggattctaatgattgagttagggtgcctaaaggaaagactagc
tcccactcagtccccgaagcgtctcactgaatctgaggtcaatgtatcca
gcacaggaagtagagatgaatcaagcagagatgcatgaggcctgaagaga
gaaagcctgaggtagagatgcatgaagcctggcctcctgcctcctcttga
ccaaatgttttagatttttcctcacactgtaatttatttctgattcttcc
tacatgtttttaaacacatggtggagttagaaacccctacatgtttgcca
tgttatttatatttattttaatgacatgtgaaactaggcacatggttatg
agtttgttctctctctctctctctctctctctctctctctctctctctct
ctttcttcctgtattccccctccctccaccctccccctccccctttcttc
ctccctccctcc

gaattctattgcatcaaaaaactgggtgactctattgcttatcttatctc
atacacatatatttattttggatatgttgaagatatctaatcatacctta
aaaaagaattaaattatgatctcaaaagaagtctttctttgtttctattc
atcacagaggagagttgttcttgttactaagctcataattaaagatacag
cctcagctgaatatcagtatagctgtgcttttccttatatagaaaccaca
atggtagtcttttgtagtattgttaatatacaatacatataaaatgatag
attttatttaaaaagtgatatgcctttagctggctttgcttgaatcaatc
aactttcatctgagtctgatgcttctctgaaaagaaagtcaactttttta
aagaacattaaatctataggagaaatatagagcctgctaattattttctg
tgatgataaattctaaagaaatagatttatactcattaaaatatgaagct
ttctagaaggtggattagttgcttttctatgccatattttagaggtaaaa
taggaatgcagatggctcagagtagctgtccataagagtcaggcttcaca
tattcacaaggaatttggtagtactgaaggatactttgagagtttataat
atctgcttattttacaggtaagtaacgacatcagaaagacacagctagtt
caaattaaaggcaagtttcgagtctctatctaggttgaattaaattcagt
gtcagtccctagatgatttctattattctctgttactaaagcaccaagag
gagaaaacagatgttatgaaacaaagaacattaaatgcaaagaaagaaaa
gaactcagataaaaatatacatcaaagcttgattttgcttcaagcatgtg
gagattaaataaaatgttcaaactttctttctttataataggcttccata
aatcatccaaaaaacactggtggccacgccaagttgatctgcacttaccc
caaatggtcttcaatgcttgatttttagttcttctccccaccccaccccc
cccttcagtcttcaatcactgacttcttctagctttacttcttcttattt
cacaagaaaatattttttgttacattttaaggcagaagagagatggcctt
aattgataaatatatatgctctgccaatcttgaacggtaagagattttaa
cctccaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66673339_66673950
seq2: B6Ng01-334A01.b_45_656 (reverse)

seq1  GGAGGGAGGGAGGGAGAAAGGGGGAGGGGGAGGGGGGAGGGAGGGGGAAT  50
      ||||||||||||| |||||||||||||||||||| |||||||||||||||
seq2  GGAGGGAGGGAGGAAGAAAGGGGGAGGGGGAGGGTGGAGGGAGGGGGAAT  50

seq1  ACAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  100

seq1  AGAGAACAAACTCATAACCATGTGCCTAGTTTCACATGTCATTAAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAAACTCATAACCATGTGCCTAGTTTCACATGTCATTAAAATAA  150

seq1  ATATAAATAACATGGCAAACATGTAGGGGTTTCTAACTCCACCATGTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAATAACATGGCAAACATGTAGGGGTTTCTAACTCCACCATGTGTT  200

seq1  TAAAAACATGTAGGAAGAATCAGAAATAAATTACAGTGTGAGGAAAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATGTAGGAAGAATCAGAAATAAATTACAGTGTGAGGAAAAATC  250

seq1  TAAAACATTTGGTCAAGAGGAGGCAGGAGGCCAGGCTTCATGCATCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATTTGGTCAAGAGGAGGCAGGAGGCCAGGCTTCATGCATCTCTA  300

seq1  CCTCAGGCTTTCTCTCTTCAGGCCTCATGCATCTCTGCTTGATTCATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGCTTTCTCTCTTCAGGCCTCATGCATCTCTGCTTGATTCATCTC  350

seq1  TACTTCCTGTGCTGGATACATTGACCTCAGATTCAGTGAGACGCTTCGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCTGTGCTGGATACATTGACCTCAGATTCAGTGAGACGCTTCGGG  400

seq1  GACTGAGTGGGAGCTAGTCTTTCCTTTAGGCACCCTAACTCAATCATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGTGGGAGCTAGTCTTTCCTTTAGGCACCCTAACTCAATCATTAG  450

seq1  AATCCCAGAAGACTGTGTGCTTCTTCCTTTTTGTAGCAAATTTCGATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGAAGACTGTGTGCTTCTTCCTTTTTGTAGCAAATTTCGATTCT  500

seq1  GTCTTTTCTTCTCATCCCTTTGTGATAACCAATACCATCAATGACTTACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTTCTTCTCATCCCTTTGTGATAACCAATACCATCAATGACTTACA  550

seq1  GGATAACTTGTTGTCCTACCTATAACTTTCTGAATTCTCACCAAAATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACTTGTTGTCCTACCTATAACTTTCTGAATTCTCACCAAAATCAG  600

seq1  ATACTGGAATTC  612
      ||||||||||||
seq2  ATACTGGAATTC  612


seq1: chr16_66543990_66545191
seq2: B6Ng01-334A01.g_70_1277

seq1  GAATTCTATTGCCATCAAAAAACTGGGTGACTCTATTGCTTATCTTATCT  50
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTG-CATCAAAAAACTGGGTGACTCTATTGCTTATCTTATCT  49

seq1  CATACACATATATTTATTTTGGATATGTTGAAGATATCTAATCATACCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACATATATTTATTTTGGATATGTTGAAGATATCTAATCATACCTT  99

seq1  AAAAAAGAATTAAATTATGATCTCAAAAGAAGTCTTTCTTTGTTTCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAATTAAATTATGATCTCAAAAGAAGTCTTTCTTTGTTTCTATT  149

seq1  CATCACAGAGGAGAGTTGTTCTTGTTACTAAGCTCATAATTAAAGATACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAGAGGAGAGTTGTTCTTGTTACTAAGCTCATAATTAAAGATACA  199

seq1  GCCTCAGCTGAATATCAGTATAGCTGTGCTTTTCCTTATATAGAAACCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGCTGAATATCAGTATAGCTGTGCTTTTCCTTATATAGAAACCAC  249

seq1  AATGGTAGTCTTTTGTAGTATTGTTAATATACAATACATATAAAATGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTAGTCTTTTGTAGTATTGTTAATATACAATACATATAAAATGATA  299

seq1  GATTTTATTTAAAAAGTGATATGCCTTTAGCTGGCTTTGCTTGAATCAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTATTTAAAAAGTGATATGCCTTTAGCTGGCTTTGCTTGAATCAAT  349

seq1  CAACTTTCATCTGAGTCTGATGCTTCTCTGAAAAGAAAGTCAACTTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCATCTGAGTCTGATGCTTCTCTGAAAAGAAAGTCAACTTTTTT  399

seq1  AAAGAACATTAAATCTATAGGAGAAATATAGAGCCTGCTAATTATTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACATTAAATCTATAGGAGAAATATAGAGCCTGCTAATTATTTTCT  449

seq1  GTGATGATAAATTCTAAAGAAATAGATTTATACTCATTAAAATATGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGATAAATTCTAAAGAAATAGATTTATACTCATTAAAATATGAAGC  499

seq1  TTTCTAGAAGGTGGATTAGTTGCTTTTCTATGCCATATTTTAGAGGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGAAGGTGGATTAGTTGCTTTTCTATGCCATATTTTAGAGGTAAA  549

seq1  ATAGGAATGCAGATGGCTCAGAGTAGCTGTCCATAAGAGTCAGGCTTCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGAATGCAGATGGCTCAGAGTAGCTGTCCATAAGAGTCAGGCTTCAC  599

seq1  ATATTCACAAGGAATTTGGTAGTACTGAAGGATACTTTGAGAGTTTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCACAAGGAATTTGGTAGTACTGAAGGATACTTTGAGAGTTTATAA  649

seq1  TATCTGCTTATTTTACAGGTAAGTAACGACATCAGAAAGACACAGCTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGCTTATTTTACAGGTAAGTAACGACATCAGAAAGACACAGCTAGT  699

seq1  TCAAATTAAAGGCAAGTTTCGAGTCTCTATCTAGGTTGAATTAAATTCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTAAAGGCAAGTTTCGAGTCTCTATCTAGGTTGAATTAAATTCAG  749

seq1  TGTCAGTCCCTAGATGATTTCTATTATTCTCTGTTACTAAAGCACCAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGTCCCTAGATGATTTCTATTATTCTCTGTTACTAAAGCACCAAGA  799

seq1  GGAGAAAACAGATGTTATGAAACAAAGAACATTAAATGCAAAGAAAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAACAGATGTTATGAAACAAAGAACATTAAATGCAAAGAAAGAAA  849

seq1  AGAACTCAGATAAAAATATACATCAAAGCTTGATTTTGCTTCAAGCATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCAGATAAAAATATACATCAAAGCTTGATTTTGCTTCAAGCATGT  899

seq1  GGAGATTAAATAAAATGTTCAAACTTTCTTTCTTTATAATAGGCTTCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTAAATAAAATGTTCAAACTTTCTTTCTTTATAATAGGCTTCCAT  949

seq1  AAATCATCCAAAAAACACT-GTGGCCACCGCCAAGTTGATCTGCACTTAC  999
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  AAATCATCCAAAAAACACTGGTGGCCA-CGCCAAGTTGATCTGCACTTAC  998

seq1  CCCAAATGGTCTTCAAATGCTTGATTTTTAGTTCTTCCTCCCCACCCCA-  1048
      |||||||||||||| ||||||||||||||||||||| |||||||||||| 
seq2  CCCAAATGGTCTTC-AATGCTTGATTTTTAGTTCTT-CTCCCCACCCCAC  1046

seq1  CCCCCCCTTCAGTCCTCAAATCACTTGACT--CTCTAGCTTTACTTCCTT  1096
      |||||||||||||| || |||||| |||||   ||||||||||||| |||
seq2  CCCCCCCTTCAGTCTTC-AATCAC-TGACTTCTTCTAGCTTTACTT-CTT  1093

seq1  CTTATTTCACA--GAAATA-TTTTTGTTACAATTTTAGGGC--CAGAGAG  1141
      |||||||||||   ||||| |||||||||| |||||| |||   ||||||
seq2  CTTATTTCACAAGAAAATATTTTTTGTTAC-ATTTTAAGGCAGAAGAGAG  1142

seq1  ATGG-CTTAGTGGATAAATATATTTG--CTGCCAAATCTTG-ACAGTAAG  1187
      |||| |||| | ||||||||||| ||  ||||| ||||||| || |||||
seq2  ATGGCCTTAATTGATAAATATATATGCTCTGCC-AATCTTGAACGGTAAG  1191

seq1  AG--TTTAAACTCCAGA  1202
      ||  ||||| |||||||
seq2  AGATTTTAACCTCCAGA  1208


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