BAC Information

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BAC

Clone NameB6Ng01-335G03
Chromosome19 (Build37)16 (Build37)
Map Location 5,777,046 - 5,778,02829,665,399 - 29,665,901
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneRbm4, Rbm14, Ccs, Ccdc87, Ctsf, Actn3, Zdhhc24, Bbs1, Dpp3, Peli3, Mrpl11, Npas4, Slc29a2, B3gnt1, Brms1, Rin1, Cd248, Tmem151, Yif1a, Cnih2, Rab1b, Klc2, LOC383424, Pacs1, Sf3b2, Gal3st3, EG631868, Catsper1, Cst6, Banf1, 2010003J03Rik, Sart1, Tsga10ip, EG622178, Drap1, AI837181, LOC383425, Fosl1, Ccdc85b, Fibp, Ctsw, Efemp2, Mus81, Cfl1, B930037P14Rik, 1700020D05Rik, Ovol1, Gm962, Rnaseh2c, Htatip, Rela, Sipa1, Pcnxl3, Map3k11, Kcnk7, Ehbp1l1, Mtvr2, Sssca1, Ltbp3, Scyl1
Downstream gene2310043N10Rik, 1200004M23Rik, Slc25a45, Tigd3, Dpf2, Cdc42ep2, Pola2, Slc22a20, Capn1, EG666300, Syvn1, Mrpl49, Fau, Znhit2, Tm7sf2, 1110014N23Rik, LOC100039773, Zfpl1, Cdca5, Gm550, Naaladl1, Sac3d1, Snx15, Arl2, EG433216, Batf2, LOC622554, Gpha2, Ppp2r5b, 1810013C15Rik, Ehd1, Cdc42bpg, Men1, Map4k2, Sf1, Pygm, Rasgrp2, Nrxn2, Slc22a12, LOC629372
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335G03.bB6Ng01-335G03.g
ACCGA120632GA120633
length978966
definitionB6Ng01-335G03.b B6Ng01-335G03.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(5,777,046 - 5,778,028)(29,665,399 - 29,665,901)
sequence
gaattcagccgtggctgcatctgggctctgtaacagtggagggaaagatg
tttcagatgttcgtctctaatagtgaaaggaagaaaacccagttcctttc
tattgtagactttgtggtgtggcagggtatgcgcatgtgtgtgcatgctt
gtggaggccagaggtcatctggggttcctcacccagcctggagggctgga
cctggattgccagtaaggcccagggggtccccgtgtcccatccccccctc
cccccatcctttccagagttggctttaactgtgagtccctaagccacatc
actacctccagttcaactctacacctttggacagggcagctcacactagg
tctacagtaactgttgcttgccttctttatggagttattacgtgttgaga
caaggtcccccaaagcacagtttaagtgacctcactatgtggctgaggat
agatgacctagacttccttttttttttttaaagatttatttatttattaa
tgtaagcacactgtagctgtcttcacacactccagaagagggcgtcagat
ctcatcacggacggttgtgagccaccatgtggttgctggggatttgaact
caggaccttcggaacagcagtcaggtgctcctaaccactgagccacctca
ccagcccccttttttaaatgttttattattattattatttatttattata
tgtaagtacactgtagctgtcctcagatactccagaagagggagtcagat
ctcgttacagatggttgtgagccaccatgtggttgctgggatttgaactc
cagacctttggaagggcagtcgggtgctgggtgctcttacccactgagcc
atctcaccagccccgacctagacttcctaatccttgtctccacacccagc
cccctacccaggctatctctgtgcatagtttacagactgtctcagactgt
cccatatgcattgaaaggatattttcca
gaattcatgaggtccacttttctcggaggacttacagtcagggaatagtt
gctgaaagaaagagaactttctttcgtttttgtttttgtcttgttcctgg
ctgccctggaacttactatgtacaccaggctggccttgaactcagagatt
tacctgtctctaccttgagagtgctgagattaaagttgagcaccaccatg
tctttaacacttttttaaaaataaattgcctttgtcatggtgttttgtaa
cagcagtagaaaagtaaccagtacagaagttggtaccgggagtggggtat
tactatgacaggctgatcatgctggggtttgttgatttgtttgttgaata
tggaagactttgagattttctttttttttttttttttaattttttttttt
taagatttatttatttattctatgtaagtacactgtagctgtcttcagac
actccagaagagggcgctagatctcgttacggatggttgtgagccaccat
gtggttgctgggatttgaactctggacctttggaagagcagtcgggtgct
cttacctgctgagccatctcaccagcccgactttgagattttcaactaaa
aagtgattgaacagtgtgagtagagcttaatgacccatcataaaggagct
tgaaagacagtggtgctgagagttactcagactgtggacgcccagctcaa
gaggtttcagggagcagggggagcaggggtgggggaacaatattagcaat
tgtcctagcaaccattcttgtgataatttggcaaagattatgactgcttt
tctgcttaagatttacctaagactaacttgaataccaatgcaccctcaca
atggctcacatggtctctagttccacctctggtgctgccttctggcctct
ttggttacaggcatgcacatggtacacatacatgcattcagacaataaag
ataaataaagtctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr19_5777046_5778028
seq2: B6Ng01-335G03.b_47_1024 (reverse)

seq1  TGGAAAATATCCTTTTCAAATGCATATGGGACAGTCCTGAGAACAGTCTG  50
      |||||||||||||||   ||||||||||||||||| ||||| ||||||||
seq2  TGGAAAATATCCTTT--CAATGCATATGGGACAGT-CTGAG-ACAGTCTG  46

seq1  TAAACTATGCACAGAGATAAGCCTGGGTAGGGGGCTGGGTGTGGAGACAA  100
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAAACTATGCACAGAGAT-AGCCTGGGTAGGGGGCTGGGTGTGGAGACAA  95

seq1  GGATTAGGAAGTCTAGGTCGGGGCTGGTGAGATGGCTCAGTGGGTAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGGAAGTCTAGGTCGGGGCTGGTGAGATGGCTCAGTGGGTAAGAG  145

seq1  CACCCAGCACCCGACTGCCCTTCCAAAGGTCTGGAGTTCAAATCCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGCACCCGACTGCCCTTCCAAAGGTCTGGAGTTCAAATCCCAGCA  195

seq1  ACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGACTCCCTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGTGGCTCACAACCATCTGTAACGAGATCTGACTCCCTCTTCT  245

seq1  GGAGTATCTGAGGACAGCTACAGTGTACTTACATATAATAAATAAATAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTATCTGAGGACAGCTACAGTGTACTTACATATAATAAATAAATAAT  295

seq1  AATAATAATAAAACATTTAAAAAAGGGGGCTGGTGAGGTGGCTCAGTGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATAAAACATTTAAAAAAGGGGGCTGGTGAGGTGGCTCAGTGGT  345

seq1  TAGGAGCACCTGACTGCTGTTCCGAAGGTCCTGAGTTCAAATCCCCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGCACCTGACTGCTGTTCCGAAGGTCCTGAGTTCAAATCCCCAGCA  395

seq1  ACCACATGGTGGCTCACAACCGTCCGTGATGAGATCTGACGCCCTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACATGGTGGCTCACAACCGTCCGTGATGAGATCTGACGCCCTCTTCT  445

seq1  GGAGTGTGTGAAGACAGCTACAGTGTGCTTACATTAATAAATAAATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGTGTGAAGACAGCTACAGTGTGCTTACATTAATAAATAAATAAAT  495

seq1  CTTTAAAAAAAAAAAAGGAAGTCTAGGTCATCTATCCTCAGCCACATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAAAAAAAAAAGGAAGTCTAGGTCATCTATCCTCAGCCACATAGT  545

seq1  GAGGTCACTTAAACTGTGCTTTGGGGGACCTTGTCTCAACACGTAATAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCACTTAAACTGTGCTTTGGGGGACCTTGTCTCAACACGTAATAAC  595

seq1  TCCATAAAGAAGGCAAGCAACAGTTACTGTAGACCTAGTGTGAGCTGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAAGAAGGCAAGCAACAGTTACTGTAGACCTAGTGTGAGCTGCCC  645

seq1  TGTCCAAAGGTGTAGAGTTGAACTGGAGGTAGTGATGTGGCTTAGGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAAGGTGTAGAGTTGAACTGGAGGTAGTGATGTGGCTTAGGGACT  695

seq1  CACAGTTAAAGCCAACTCTGGAAAGGATGGGGGGAGGGGGGGATGGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTTAAAGCCAACTCTGGAAAGGATGGGGGGAGGGGGGGATGGGACA  745

seq1  CGGGGACCCCCTGGGCCTTACTGGCAATCCAGGTCCAGCCCTCCAGGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGACCCCCTGGGCCTTACTGGCAATCCAGGTCCAGCCCTCCAGGCTG  795

seq1  GGTGAGGAACCCCAGATGACCTCTGGCCTCCACAAGCATGCACACACATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGGAACCCCAGATGACCTCTGGCCTCCACAAGCATGCACACACATG  845

seq1  CGCATACCCTGCCACACCACAAAGTCTACAATAGAAAGGAACTGGGTTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCATACCCTGCCACACCACAAAGTCTACAATAGAAAGGAACTGGGTTTT  895

seq1  CTTCCTTTCACTATTAGAGACGAACATCTGAAACATCTTTCCCTCCACTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTCACTATTAGAGACGAACATCTGAAACATCTTTCCCTCCACTG  945

seq1  TTACAGAGCCCAGATGCAGCCACGGCTGAATTC  983
      |||||||||||||||||||||||||||||||||
seq2  TTACAGAGCCCAGATGCAGCCACGGCTGAATTC  978

seq1: chr16_29665399_29665901
seq2: B6Ng01-335G03.g_484_1008 (reverse)

seq1  TCTGAATGCATG--TGTGTACCATGAATGCATGTGTGT-ACCACGAATGC  47
      ||||||||||||  |||||||||||  ||||||  ||| ||||   | ||
seq2  TCTGAATGCATGTATGTGTACCATG--TGCATGCCTGTAACCAAAGAGGC  48

seq1  ---ATGTGTGTACCAGCCTGTGGAAACTCTAGAAGAT-TCAGCATCT---  90
         | |   | |||||   |||| ||||  |||  || | |||   |   
seq2  CAGAAGGCAGCACCAG-AGGTGG-AACTAGAGACCATGTGAGCCATTGTG  96

seq1  ACCCAGCAAGTGAATTCCTG-CAGCGCACGGCAATGCGGTTTTGTTGCAG  139
      |    |||   | ||||  |  ||     || ||      | |   ||||
seq2  AGGGTGCATTGGTATTCAAGTTAGTCTTAGGTAA-----ATCTTAAGCAG  141

seq1  CAGCGGTGTCTGGTGCACACTGCCAGGCTTTC-------TGGTGTCTAGT  182
       |  |  |||   |   |  |||||   | ||       ||||  |||| 
seq2  AAAAGCAGTC--ATAATCTTTGCCAAATTATCACAAGAATGGTTGCTAGG  189

seq1  ACCATTTCCCCCAAGAAAGGAGTAATG----GGGAACTGTGGTC------  222
      || ||| |            | || ||       | |  || ||      
seq2  ACAATTGC-----------TAATATTGTTCCCCCACCCCTGCTCCCCCTG  228

seq1  CTGCAAGGAAGCCC---AACTGG-----CTTAGTCTGGAGCTACT-GCAT  263
      || |  | || | |   | ||||     |  ||||| |||  |||  || 
seq2  CTCCCTGAAACCTCTTGAGCTGGGCGTCCACAGTCT-GAGTAACTCTCAG  277

seq1  CTCCAC-GT------AACGCC----AAATGCTTCTCTAAGGT--------  294
      | |||| ||      | | ||      |||  ||  |||| |        
seq2  CACCACTGTCTTTCAAGCTCCTTTATGATGGGTCATTAAGCTCTACTCAC  327

seq1  --TGATTTTTCTCATTTCA-TTAAAAAAATAAAAATAGGGGCTAGTGAGA  341
        || |   || | ||| | || ||||  | ||| |  ||||| ||||||
seq2  ACTGTTCAATCACTTTTTAGTTGAAAATCTCAAAGT-CGGGCTGGTGAGA  376

seq1  TGGCTCAGTGGGTAAGAGCACCCAACTGCTCTTCCAGACTGCTCTTCCGA  391
      ||||||||  |||||||||||||             |||||||||||| |
seq2  TGGCTCAGCAGGTAAGAGCACCC-------------GACTGCTCTTCCAA  413

seq1  AGGTCCGGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCG  441
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCAGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCG  463

seq1  TAAAGAGATCTGACTCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGT  491
      ||| |||||||  | |||||||||||||||||||||||||||||||||||
seq2  TAACGAGATCTAGCGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGT  513

seq1  ACTTACATATAA  503
      ||||||||| ||
seq2  ACTTACATAGAA  525