BAC Information

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BAC

Clone NameB6Ng01-335O08
Chromosome16 (Build37)
Map Location 6,408,566 - 6,501,864
singlet/doubletdoublet
Overlap geneA2bp1
Upstream geneLOC100042436, LOC100042445
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335O08.bB6Ng01-335O08.g
ACCGA120980GA120981
length1,097980
definitionB6Ng01-335O08.b B6Ng01-335O08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,408,566 - 6,409,657)(6,500,881 - 6,501,864)
sequence
ggaattcttttggagataacggcaaaattctcaggagagattgattgggt
tactggtggcttgtgattaattttgagctaatccttagacagaatggctg
ggtttttcagactggttggtcttgattctcgttgtccataaagtaaggca
tgggtggagatacaggatctcatataaactctatagctgggcatggaatc
acagatctctcttgttaggccacagaggcatatggagcccaaagtcacat
cgtgagtgttgtttctctttccccattcacaaaattttaaagagaggatc
tataataggcccagaggtcttcaagtaggctcggcagctggccagagaat
tccagaaatctacctgtctccattaatcagtgctggaatcatgtgggttc
tagatagttagtccaactcttatgctttcaaaggcaagaattttaccaaa
ggagctagcatccagcatataagaatgtatgcatttttaaatctaaagta
tatggaaagtatacacacatgcaaacacatatagtcatgtatatcatata
tcatatgtaatataccaatatgtataatataacgaatatttattaacttg
ttttcttgcatggtgcaaatatataataaaatacttggtattgtatggtt
tatatgtagtcccaccctctttcatgggtctttttcctaattataaataa
caaattaccttttaaaaccacgaacacatccaagcattgtgcctcatggc
tgttatctgcccactcaggaagtgaggtagggcttgcagtaatgagttct
gtgccagcttaggctacagagataggcgctgttgctaaacaaataaatag
cattatccgtcccacagtcctgcaagggttggcatttaatgctatttact
ttgacaaataggtggcaggactttgagtcccaaggcagaattctgagtgc
ataactcccggaaattgtccccaggttaacaagaatgtgcccacgggcca
tggaaagtcagttctgctaaatacaagaggttttttatctgtctgatgat
attctgggaccccacttctgactgccttgatttggaatgtgtagcag

gaattctgtcctcaccataaaagtcgagaatattcagacagttcattcag
aaatatacaaatatttcaataattatataaatgtagttttaataggaaga
cacttactgaacagtgtgtccagctcacttgctggtcttttctacctttc
atggagaaacataacaatttagattataatgataggagttttcatcagat
agtggccgtcatggcctatttcctggtaactctaacttgcacactggaaa
agcagaacgcaaatctaaaacccaacatgtatagttactgtaaatgagaa
cctaccacctcatccatgaagaggtcaaagaagatgaagagacgaagggg
aagagttgccatagttacagtctcatcagtccctgaggacacgggaaatt
ccaccctaactgcaatctgtaccggttttttttttttcctcaaccaatgt
ttaaggtggtaattctcttaagccccatattatgcatgaggatatcacag
ggcagagagaccagattcctaaggtgtctttaattgaacactatgaagga
ttgcactgaaccatgtcctagcccaaagtctaaactgaaccacccagcct
ggcctctcacacaaaaacattgctttaaggtgctctgtacgtacaccagg
caaagctcagaaagtaaacagctaagaactgtagctttgtgagaaggatg
ctagtgcttgtttgaaacgaggattttagtattttctctctctctctctc
tctctctctctctctctctctctctctctctctctctctctctatgcatc
cctctctcaggatctaacaatatacacatataaatcagaagtaagaaggg
tgtggagcagacagaatgatcaggaactttcgcccccacttttgtctttg
gatgagtgggttctttgcactgagggggttcactcgttcaacacttccag
ttttcgggggaccagcgcagttgaaaccaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_6408566_6409657
seq2: B6Ng01-335O08.b_48_1143

seq1  GAATTCTTTTGGAGATAACGGCAAAATTCTCAGGAGAGATTGATTGGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGGAGATAACGGCAAAATTCTCAGGAGAGATTGATTGGGTT  50

seq1  ACTGGTGGCTTGTGATTAATTTTGAGCTAATCCTTAGACAGAATGGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGGCTTGTGATTAATTTTGAGCTAATCCTTAGACAGAATGGCTGG  100

seq1  GTTTTTCAGACTGGTTGGTCTTGATTCTCGTTGTCCATAAAGTAAGGCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCAGACTGGTTGGTCTTGATTCTCGTTGTCCATAAAGTAAGGCAT  150

seq1  GGGTGGAGATACAGGATCTCATATAAACTCTATAGCTGGGCATGGAATCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGAGATACAGGATCTCATATAAACTCTATAGCTGGGCATGGAATCA  200

seq1  CAGATCTCTCTTGTTAGGCCACAGAGGCATATGGAGCCCAAAGTCACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTCTTGTTAGGCCACAGAGGCATATGGAGCCCAAAGTCACATC  250

seq1  GTGAGTGTTGTTTCTCTTTCCCCATTCACAAAATTTTAAAGAGAGGATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTTGTTTCTCTTTCCCCATTCACAAAATTTTAAAGAGAGGATCT  300

seq1  ATAATAGGCCCAGAGGTCTTCAAGTAGGCTCGGCAGCTGGCCAGAGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGGCCCAGAGGTCTTCAAGTAGGCTCGGCAGCTGGCCAGAGAATT  350

seq1  CCAGAAATCTACCTGTCTCCATTAATCAGTGCTGGAATCATGTGGGTTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAATCTACCTGTCTCCATTAATCAGTGCTGGAATCATGTGGGTTCT  400

seq1  AGATAGTTAGTCCAACTCTTATGCTTTCAAAGGCAAGAATTTTACCAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTTAGTCCAACTCTTATGCTTTCAAAGGCAAGAATTTTACCAAAG  450

seq1  GAGCTAGCATCCAGCATATAAGAATGTATGCATTTTTAAATCTAAAGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGCATCCAGCATATAAGAATGTATGCATTTTTAAATCTAAAGTAT  500

seq1  ATGGAAAGTATACACACATGCAAACACATATAGTCATGTATATCATATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAGTATACACACATGCAAACACATATAGTCATGTATATCATATAT  550

seq1  CATATGTAATATACCAATATGTATAATATAACGAATATTTATTAACTTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAATATACCAATATGTATAATATAACGAATATTTATTAACTTGT  600

seq1  TTTCTTGCATGGTGCAAATATATAATAAAATACTTGGTATTGTATGGTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCATGGTGCAAATATATAATAAAATACTTGGTATTGTATGGTTT  650

seq1  ATATGTAGTCCCACCCTCTTTCATGGGTCTTTTTCCTAATTATAAATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTAGTCCCACCCTCTTTCATGGGTCTTTTTCCTAATTATAAATAAC  700

seq1  AAATTACCTTTTAAAACCACGAACACATCCAAGCATTGTGCCTCATGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACCTTTTAAAACCACGAACACATCCAAGCATTGTGCCTCATGGCT  750

seq1  GTTATCTGCCCACTCAGGAAGTGAGGTAGGGCTTGCAGTAATGAGTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCTGCCCACTCAGGAAGTGAGGTAGGGCTTGCAGTAATGAGTTCTG  800

seq1  TGCCAGCTTAGGCTACAGAGATAGGCGCTGTTGCTAAACAAATAAATAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCTTAGGCTACAGAGATAGGCGCTGTTGCTAAACAAATAAATAGC  850

seq1  ATTATCCGTCCCACAGTCCTGCAAGGGTTGGCATTTAATGCTATTTACTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCCGTCCCACAGTCCTGCAAGGGTTGGCATTTAATGCTATTTACTT  900

seq1  TGACAAATAGGTGGCAGGGACTTTGAGTCCC-AGGCAGAATTTCTGAGTG  949
      |||||||||||||||| |||||||||||||| |||||||| |||||||||
seq2  TGACAAATAGGTGGCA-GGACTTTGAGTCCCAAGGCAGAA-TTCTGAGTG  948

seq1  CATAACT-CCGGAAA-TGTCCCCAGG-TAAC-AGAATGTGCCCACGGGCC  995
      ||||||| ||||||| |||||||||| |||| ||||||||||||||||||
seq2  CATAACTCCCGGAAATTGTCCCCAGGTTAACAAGAATGTGCCCACGGGCC  998

seq1  ATGG-AAGTCAGTTCTGCTAAATAC-AGAGGGTTTTTATCTGTCTGAATG  1043
      |||| |||||||||||||||||||| ||||| |||||||||||||| |||
seq2  ATGGAAAGTCAGTTCTGCTAAATACAAGAGGTTTTTTATCTGTCTG-ATG  1047

seq1  AATATTTCTGGGGCCCCAC-TCTGACTGCCTGGATTTGGGATGTG-AGCA  1091
       ||| ||||||| |||||| ||||||||||| ||||||| ||||| ||||
seq2  -ATA-TTCTGGGACCCCACTTCTGACTGCCTTGATTTGGAATGTGTAGCA  1095

seq1  G  1092
      |
seq2  G  1096


seq1: chr16_6500881_6501864
seq2: B6Ng01-335O08.g_67_1045 (reverse)

seq1  TAGTTTCAACTTGCGCTGATCACCCAAAAACTGGAAATGTAGAAACAGTG  50
      | |||||||| ||||||| || ||| |||||||||| ||| |||  ||||
seq2  TGGTTTCAAC-TGCGCTGGTCCCCCGAAAACTGGAAGTGTTGAACGAGTG  49

seq1  AACCACCTAAGTGCAAAGAACCCACTCATCCAAGGACACGAGTGTGTGCA  100
      |||| ||| |||||||||||||||||||||||| ||||  |||| | || 
seq2  AACCCCCTCAGTGCAAAGAACCCACTCATCCAAAGACAAAAGTGGGGGCG  99

seq1  AATGCTTCCTGCTCATATCTGTCAGCT-CAAACCCTTC-TGCTTCTGATT  148
      || | |||||| |||| |||||| ||| || ||||||| | |||||||||
seq2  AAAG-TTCCTGATCAT-TCTGTCTGCTCCACACCCTTCTTACTTCTGATT  147

seq1  TCTCTGTGTCAATTGTTAATTCGTGAGAGAGGGAGGGAGAGAGAGAGAGA  198
      | | |||||  |||||||  || ||||||||||| |     | |||||||
seq2  TATATGTGTATATTGTTAGATCCTGAGAGAGGGATG----CATAGAGAGA  193

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  243

seq1  GAAAATACTAAAATCCTCGTTTCAAACAAGCACTAGCATCCTTCTCACAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACTAAAATCCTCGTTTCAAACAAGCACTAGCATCCTTCTCACAA  293

seq1  AGCTACAGTTCTTAGCTGTTTACTTTCTGAGCTTTGCCTGGTGTACGTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACAGTTCTTAGCTGTTTACTTTCTGAGCTTTGCCTGGTGTACGTAC  343

seq1  AGAGCACCTTAAAGCAATGTTTTTGTGTGAGAGGCCAGGCTGGGTGGTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCTTAAAGCAATGTTTTTGTGTGAGAGGCCAGGCTGGGTGGTTC  393

seq1  AGTTTAGACTTTGGGCTAGGACATGGTTCAGTGCAATCCTTCATAGTGTT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGACTTTGGGCTAGGACATGGTTCAGTGCAATCCTTCATAGTGTT  443

seq1  CAATTAAAGACACCTTAGGAATCTGGTCTCTCTGCCCTGTGATATCCTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAAGACACCTTAGGAATCTGGTCTCTCTGCCCTGTGATATCCTCA  493

seq1  TGCATAATATGGGGCTTAAGAGAATTACCACCTTAAACATTGGTTGAGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAATATGGGGCTTAAGAGAATTACCACCTTAAACATTGGTTGAGGA  543

seq1  AAAAAAAAAAACCGGTACAGATTGCAGTTAGGGTGGAATTTCCCGTGTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACCGGTACAGATTGCAGTTAGGGTGGAATTTCCCGTGTCC  593

seq1  TCAGGGACTGATGAGACTGTAACTATGGCAACTCTTCCCCTTCGTCTCTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGACTGATGAGACTGTAACTATGGCAACTCTTCCCCTTCGTCTCTT  643

seq1  CATCTTCTTTGACCTCTTCATGGATGAGGTGGTAGGTTCTCATTTACAGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCTTTGACCTCTTCATGGATGAGGTGGTAGGTTCTCATTTACAGT  693

seq1  AACTATACATGTTGGGTTTTAGATTTGCGTTCTGCTTTTCCAGTGTGCAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATACATGTTGGGTTTTAGATTTGCGTTCTGCTTTTCCAGTGTGCAA  743

seq1  GTTAGAGTTACCAGGAAATAGGCCATGACGGCCACTATCTGATGAAAACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAGTTACCAGGAAATAGGCCATGACGGCCACTATCTGATGAAAACT  793

seq1  CCTATCATTATAATCTAAATTGTTATGTTTCTCCATGAAAGGTAGAAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATCATTATAATCTAAATTGTTATGTTTCTCCATGAAAGGTAGAAAAG  843

seq1  ACCAGCAAGTGAGCTGGACACACTGTTCAGTAAGTGTCTTCCTATTAAAA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAAGTGAGCTGGACACACTGTTCAGTAAGTGTCTTCCTATTAAAA  893

seq1  CTACATTTATATAATTATTGAAATATTTGTATATTTCTGAATGAACTGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTATATAATTATTGAAATATTTGTATATTTCTGAATGAACTGTC  943

seq1  TGAATATTCTCGACTTTTATGGTGAGGACAGAATTC  984
      ||||||||||||||||||||||||||||||||||||
seq2  TGAATATTCTCGACTTTTATGGTGAGGACAGAATTC  979


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