BAC Information

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BAC

Clone NameB6Ng01-336E02
Chromosome16 (Build37)
Map Location 52,443,703 - 52,444,850
singlet/doubletsinglet
Overlap geneAlcam
Upstream geneCblb
Downstream geneLOC100043430, LOC667895
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336E02.bB6Ng01-336E02.g
ACCGA121231GA121232
length1,2181,141
definitionB6Ng01-336E02.b B6Ng01-336E02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaaagcaatatagagcaaaccagtagccaac
atcaaactgaatgaagagaaactcaaagcaatcccactaaaatcagggac
tagacaaggctacccactcaccttctctattcaatatagtacttgaagtc
cttgccagagcaattacacaataaaaggaggtcaaagtaagtggaagaaa
cttgaagcaatcctactaaaatcagggatgagacaaggctgtccacagtt
tccgtatctattcagtatagtacttgatgtcctagccacagcaaaaagag
gtcaaagggatacaaattgggaaggaagaagtaaatatatcactatttgc
agatgatatgatagtatacttaagtgaccgcaaaaattccaccagagaac
tcctacagctgttaaacaacttcagcaaagtggctggatataaaattaac
tcaaacaaatcggtggccttcctctacacaaaggataaacaggctgagaa
agaaattagggaagcaacacacttcacaatagttacaaacaatataaaat
accctggagtgactctacctaaccaagtaaaagatctgtatgatgaaaac
ttcaagttcctgaagaaagaattcaaagaagttctcagaagatggaaaga
tctcccatgctcatggattggcagacttaatatagtaaaaatggccatct
tgctgaaatctacaaattcaatgaagtccccatcaaattttaactcaatt
cttcatatctcaaattcatttacaataacaagaagaaacaacaacaacaa
aaccctcaggatagcaaaaactattctcaacaataaaagaacttctggag
gaatcaccatccctgacctcaaactgtactgcagaggaatagtgattaaa
aactgcatggtattaatacaggcaggtaggtagacaatgggaatagaatt
gaagacccagaaaggaaaacaagccaaatggagatgtttaaaactgaact
ataaaggctaaggttgagggaacagtgtcattgtcaatgtaaatacagga
tatgaaaaatgaatttcagaataaaagtgaaacagtgatcttagaaagat
gtgccattacataatcatgccatctttagaatagaatcccacgaatatca
agtagcttaacttaatccataaaggtgttcagaaaaatttaaggcttaga
tagagaaatgtaacacag

gaattccttatttttgctaaaaaaaaatggcaacaacacaattatagaag
gagcatgatctttttaagtatgattttaaaatatctcttcaaataataaa
tttattatttaactcagcaattccagttctaacatacttgctcatatgga
aaacagcatctggtaggatggtcataacataactaaatgcatattgtttc
agtttcaggtgaggtggagcaaacgtgcagacccaagcacagactcttaa
tctttagactgtgttgataaagaaaagagaaatgtgcaaatgtttagata
taaggagtcctcgctactcctaaaggaggggggtgtatacacaaatctct
gccactatgtgagtactcaaaatttctgagcctcacacagcagacttcct
gagcctcacacaggcaagcaaattagcaggttttgggggacgtattaaac
aaccccaagaacccctcagtgtccaagttgactctgagagcttgtttagc
tttactgaaaagaggcagatatcacttccctcggggagtgagagctgcct
gcctccccctctccaagtctcctagttccagctactctcttactctgctg
gttttgcttggttcctcctcagcactgcttcagatacctctttagaatct
ttttccgagtttatcctgaccccaagcagacccagctgttgttatgtaaa
ctgctctgtaccgtttttgaatgtttgtagcacctagcaactcctctagc
tccggttacaagcatttctcaagcttctgtttgcaggcatgtggcctctt
gagtagttagtttacttcttcaatgccaaagcattgctgcttcgctctgc
acactgaaattattggataatatacctgttcggtagtcacatgaatttta
agttaggattgaccaacagtgtgaactttgaccaacaacagattctttat
ttccagattccaaactaacctatgccagtcctttgccatgacatccttga
tctctgtctcttctgtctacccacaggaaatattcttatctcagattata
atattcatatagatattcaggattcttattttcagattaggagttttaaa
ataaggagaattattttatggaaaaacactgggtatctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_52443703_52444850
seq2: B6Ng01-336E02.g_63_1203

seq1  GAATTCCTTATTTTTGCTAAAAAAAAATGGCAACAACACAATTATAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTATTTTTGCTAAAAAAAAATGGCAACAACACAATTATAGAAG  50

seq1  GAGCATGATCTTTTTAAGTATGATTTTAAAATATCTCTTCAAATAATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATGATCTTTTTAAGTATGATTTTAAAATATCTCTTCAAATAATAAA  100

seq1  TTTATTATTTAACTCAGCAATTCCAGTTCTAACATACTTGCTCATATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATTTAACTCAGCAATTCCAGTTCTAACATACTTGCTCATATGGA  150

seq1  AAACAGCATCTGGTAGGATGGTCATAACATAACTAAATGCATATTGTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCATCTGGTAGGATGGTCATAACATAACTAAATGCATATTGTTTC  200

seq1  AGTTTCAGGTGAGGTGGAGCAAACGTGCAGACCCAAGCACAGACTCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCAGGTGAGGTGGAGCAAACGTGCAGACCCAAGCACAGACTCTTAA  250

seq1  TCTTTAGACTGTGTTGATAAAGAAAAGAGAAATGTGCAAATGTTTAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAGACTGTGTTGATAAAGAAAAGAGAAATGTGCAAATGTTTAGATA  300

seq1  TAAGGAGTCCTCGCTACTCCTAAAGGAGGGGGGTGTATACACAAATCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAGTCCTCGCTACTCCTAAAGGAGGGGGGTGTATACACAAATCTCT  350

seq1  GCCACTATGTGAGTACTCAAAATTTCTGAGCCTCACACAGCAGACTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACTATGTGAGTACTCAAAATTTCTGAGCCTCACACAGCAGACTTCCT  400

seq1  GAGCCTCACACAGGCAAGCAAATTAGCAGGTTTTGGGGGACGTATTAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTCACACAGGCAAGCAAATTAGCAGGTTTTGGGGGACGTATTAAAC  450

seq1  AACCCCAAGAACCCCTCAGTGTCCAAGTTGACTCTGAGAGCTTGTTTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAAGAACCCCTCAGTGTCCAAGTTGACTCTGAGAGCTTGTTTAGC  500

seq1  TTTACTGAAAAGAGGCAGATATCACTTCCCTCGGGGAGTGAGAGCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGAAAAGAGGCAGATATCACTTCCCTCGGGGAGTGAGAGCTGCCT  550

seq1  GCCTCCCCCTCTCCAAGTCTCCTAGTTCCAGCTACTCTCTTACTCTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCCCTCTCCAAGTCTCCTAGTTCCAGCTACTCTCTTACTCTGCTG  600

seq1  GTTTTGCTTGGTTCCTCCTCAGCACTGCTTCAGATACCTCTTTAGAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTTGGTTCCTCCTCAGCACTGCTTCAGATACCTCTTTAGAATCT  650

seq1  TTTTCCGAGTTTATCCTGACCCCAAGCAGACCCAGCTGTTGTTATGTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGAGTTTATCCTGACCCCAAGCAGACCCAGCTGTTGTTATGTAAA  700

seq1  CTGCTCTGTACCGTTTTTGAATGTTTGTAGCACCTAGCAACTCCTCTAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGTACCGTTTTTGAATGTTTGTAGCACCTAGCAACTCCTCTAGC  750

seq1  TCCGGTTACAAGCATTTCTCAAGCTTCTGTTTGCAGGCATGTGGCCTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGTTACAAGCATTTCTCAAGCTTCTGTTTGCAGGCATGTGGCCTCTT  800

seq1  GAGTAGTTAGTTTACTTCTTCAATGCCAAAGCATTGCTGCTTCGCTCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAGTTAGTTTACTTCTTCAATGCCAAAGCATTGCTGCTTCGCTCTGC  850

seq1  ACACTGAAATTATTGGATAATATACCTGTTCGGTAGTCACATGAATTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAATTATTGGATAATATACCTGTTCGGTAGTCACATGAATTTTA  900

seq1  AGTTAGGATTGACCAACAGTGTGAACTTTGACCAACAACAGATTCTTTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGATTGACCAACAGTGTGAACTTTGACCAACAACAGATTCTTTAT  950

seq1  TTCCAGATTCCAAACTAACCTATGCCAGTCCTTTGCCATGACATCCTTGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATTCCAAACTAACCTATGCCAGTCCTTTGCCATGACATCCTTGA  1000

seq1  TCTCTGTCTCTTCCTGTCTACCCACAGGAAATATTCTTATTCTTCAGATT  1050
      |||||||||||| |||||||||||||||||||||||||||   |||||||
seq2  TCTCTGTCTCTT-CTGTCTACCCACAGGAAATATTCTTAT--CTCAGATT  1047

seq1  AATAATATTCAATATAAGAATATTCAAGATTCTTATTTTCAGATTAAGAG  1100
       ||||||||| |||||   ||||||| ||||||||||||||||||| |||
seq2  -ATAATATTC-ATATA--GATATTCAGGATTCTTATTTTCAGATTAGGAG  1093

seq1  TTTTAAAATAA-GAGATTATTTTTAATGAAAAACACTGGTAAATCTCTG  1148
      ||||||||||| |||| |  |||||  ||||||||||||   |||||||
seq2  TTTTAAAATAAGGAGAATTATTTTATGGAAAAACACTGG-GTATCTCTG  1141


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