BAC Information

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BAC

Clone NameB6Ng01-337M13
Chromosome16 (Build37)
Map Location 93,457,369 - 93,561,652
singlet/doubletdoublet
Overlap genenone
Upstream geneDscr1, 2410124H12Rik, Clic6, Runx1, EG666023, LOC100040747
Downstream geneSetd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2, Hlcs, LOC622832, LOC100040857, Dscr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337M13.bB6Ng01-337M13.g
ACCGA122300GA122301
length5971,126
definitionB6Ng01-337M13.b B6Ng01-337M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,457,369 - 93,457,971)(93,560,513 - 93,561,652)
sequence
tttattttaggtgctttgggaaaactgcagagtccttgagtttagggcca
aagacgcccaaaatgttgcaatcctaaacctttggccgtgacaaaaacat
gtttgcaagtggaaacttttcggtgtggggcttctcctgctgttttgttt
gggtgtgtgtttgcttgcttgcttggtgccaaaggatttcctccaaggct
tcccagaagcagggagctggggtcagcactccttggtgtgttggcctccg
gccacttgtgcccctcctcagacaaactgaacagtttgagaagggggaaa
aaaagtcagcttggggagctattgtctccctgcctccaaagtagttggga
atttttgtttgttttactgctgttgttttgcttttgttttttaagatttc
cttgttttatgtatgtgagaacattgttgctgtcttcagacacaccacaa
gagggcatcagatcccattacagatggatgtgagccaccatgtggttgct
gggaattgaactcaggacctctggaagagcagtcagtgctcttaaccact
gagccatctctccagccccttcaagtgtgtgtgtgtgtgtgtgtgtg
gaattctgtattctcagagaaatagctccttggagcagcaagggaaaagc
tttctcctttctccatgaaatactatgtcattcataggagtaatgacctc
ctgttaaagcaaatacagtactgaacaaaactaagcatataagggagact
tgattcagggtgccttagtgatggagaagggccagtggttgaggccaatg
cccacagtgttgggtcccgtgttttcaaatgattttggctgtgattaggc
tttctgatgcctgtccaaacaggctgctactttcaaagagacacttggag
aggcagcgtggtcttaatgattctatgtcaaagggatggctcctaggtcc
ttcagaaagacatttgtgagttgtcaaactagaaagagacttaaaaaatt
ttatacattttatataataatttttttcatttattgaagtaagtttttgc
tatgtagcccaggctggccttaaactcatgttcctcgtgcctctgcctcc
ccagtgcttgattacagacttgtataccaatataccaggcatacatttat
gtattttgaagtgactgagatggaaatgttgtaagaaacaaagataggca
cctagagtcaggtataagatggttttaagctgagtccagctggggaaact
gtgaagcaagcgacaggcagtttcctcaggaattcagtgagaacaccgtg
tttcctgaagttcacaggacagtgtaaagctatctctgagccagcaatag
gagaacatagttaagttcatttcatttggtaggttggccatcttggtcag
tcaccaggaaagaggatgccatggctcttgtcactcactggggtcttggt
gttggtgacaggaaatccttgagtatggtcctacctactgaagaggttag
ctgggagtgccttcccaacacaaaggctgttatctgacacacatatgtaa
aaatacaccgcgaacacacgtgtgatatctctaagacagcaagcacacct
gtagctcttcttttgtttctcctgcagctggttctttactcatgtgtctt
tgacctatactgccgatgatctgatcacagaagtaagagaaattttaaag
agggtattccatgaatgaagccacat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_93457369_93457971
seq2: B6Ng01-337M13.b_43_645

seq1  GAATTCTTTATTTTAGGTGCTTTGGGAAAACTGCAGAGTCCTTGAGTTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTTAGGTGCTTTGGGAAAACTGCAGAGTCCTTGAGTTTA  50

seq1  GGGCCAAAGACGCCCAAAATGTTGCAATCCTAAACCTTTGGCCGTGACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAAAGACGCCCAAAATGTTGCAATCCTAAACCTTTGGCCGTGACAA  100

seq1  AAACATGTTTGCAAGTGGAAACTTTTCGGTGTGGGGCTTCTCCTGCTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGTTTGCAAGTGGAAACTTTTCGGTGTGGGGCTTCTCCTGCTGTT  150

seq1  TTGTTTGGGTGTGTGTTTGCTTGCTTGCTTGGTGCCAAAGGATTTCCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGGTGTGTGTTTGCTTGCTTGCTTGGTGCCAAAGGATTTCCTCC  200

seq1  AAGGCTTCCCAGAAGCAGGGAGCTGGGGTCAGCACTCCTTGGTGTGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTCCCAGAAGCAGGGAGCTGGGGTCAGCACTCCTTGGTGTGTTGG  250

seq1  CCTCCGGCCACTTGTGCCCCTCCTCAGACAAACTGAACAGTTTGAGAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGGCCACTTGTGCCCCTCCTCAGACAAACTGAACAGTTTGAGAAGG  300

seq1  GGGAAAAAAAGTCAGCTTGGGGAGCTATTGTCTCCCTGCCTCCAAAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAAAGTCAGCTTGGGGAGCTATTGTCTCCCTGCCTCCAAAGTAG  350

seq1  TTGGGAATTTTTGTTTGTTTTACTGCTGTTGTTTTGCTTTTGTTTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAATTTTTGTTTGTTTTACTGCTGTTGTTTTGCTTTTGTTTTTTAA  400

seq1  GATTTCCTTGTTTTATGTATGTGAGAACATTGTTGCTGTCTTCAGACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCTTGTTTTATGTATGTGAGAACATTGTTGCTGTCTTCAGACACA  450

seq1  CCACAAGAGGGCATCAGATCCCATTACAGATGGATGTGAGCCACCATGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGAGGGCATCAGATCCCATTACAGATGGATGTGAGCCACCATGTG  500

seq1  GTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTA  550

seq1  ACCACTGAGCCATCTCTCCAGCCCCTTCAAGTGTGTGTGTGTGTGTGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGAGCCATCTCTCCAGCCCCTTCAAGTGTGTGTGTGTGTGTGTGT  600

seq1  GTG  603
      |||
seq2  GTG  603

seq1: chr16_93560513_93561652
seq2: B6Ng01-337M13.g_66_1191 (reverse)

seq1  ATGTGTGCTTCCATTCCATGGAAATACCCTCTTTAAAA-TTCTCTTACCT  49
      ||||| |||| |||| ||||| |||||||||||||||| ||||||||| |
seq2  ATGTG-GCTT-CATT-CATGG-AATACCCTCTTTAAAATTTCTCTTACTT  46

seq1  CCTGGTGATCAGATCCACCCGCAGTTATAGGGCCAAAGACACAATGGAGG  99
      |   |||||||||| || | |||| |||| || ||||||||| |||   |
seq2  C--TGTGATCAGAT-CATCGGCAG-TATA-GGTCAAAGACAC-ATG--AG  88

seq1  TAAAGAAACAGCTGCAGGAGAATACAAAAAGAAGAGGCTACAGGTGTGCT  149
      ||||||| |||||||||||||| || ||||||||| ||||||||||||||
seq2  TAAAGAACCAGCTGCAGGAGAA-AC-AAAAGAAGA-GCTACAGGTGTGCT  135

seq1  TGCTGTCTTTAGAGATATCACACGTGTGTTCGCGGTGTA-TTTTACATAT  198
      ||||||| ||||||||||||||||||||||||||||||| ||||||||||
seq2  TGCTGTC-TTAGAGATATCACACGTGTGTTCGCGGTGTATTTTTACATAT  184

seq1  GTGTGTCAGATAACAGCCTTTGTGTTGGGAAGGCACTCCCAGCTAACCTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAGATAACAGCCTTTGTGTTGGGAAGGCACTCCCAGCTAACCTC  234

seq1  TTCAGTAGGTAGGACCATACTCAAGGATTTCCTGTCACCAACACCAAGAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGGTAGGACCATACTCAAGGATTTCCTGTCACCAACACCAAGAC  284

seq1  CCCAGTGAGTGACAAGAGCCATGGCATCCTCTTTCCTGGTGACTGACCAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGAGTGACAAGAGCCATGGCATCCTCTTTCCTGGTGACTGACCAA  334

seq1  GATGGCCAACCTACCAAATGAAATGAACTTAACTATGTTCTCCTATTGCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCAACCTACCAAATGAAATGAACTTAACTATGTTCTCCTATTGCT  384

seq1  GGCTCAGAGATAGCTTTACACTGTCCTGTGAACTTCAGGAAACACGGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGATAGCTTTACACTGTCCTGTGAACTTCAGGAAACACGGTGT  434

seq1  TCTCACTGAATTCCTGAGGAAACTGCCTGTCGCTTGCTTCACAGTTTCCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTGAATTCCTGAGGAAACTGCCTGTCGCTTGCTTCACAGTTTCCC  484

seq1  CAGCTGGACTCAGCTTAAAACCATCTTATACCTGACTCTAGGTGCCTATC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGACTCAGCTTAAAACCATCTTATACCTGACTCTAGGTGCCTATC  534

seq1  TTTGTTTCTTACAACATTTCCATCTCAGTCACTTCAAAATACATAAATGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCTTACAACATTTCCATCTCAGTCACTTCAAAATACATAAATGT  584

seq1  ATGCCTGGTATATTGGTATACAAGTCTGTAATCAAGCACTGGGGAGGCAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTGGTATATTGGTATACAAGTCTGTAATCAAGCACTGGGGAGGCAG  634

seq1  AGGCACGAGGAACATGAGTTTAAGGCCAGCCTGGGCTACATAGCAAAAAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACGAGGAACATGAGTTTAAGGCCAGCCTGGGCTACATAGCAAAAAC  684

seq1  TTACTTCAATAAATGAAAAAAATTATTATATAAAATGTATAAAATTTTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTCAATAAATGAAAAAAATTATTATATAAAATGTATAAAATTTTTT  734

seq1  AAGTCTCTTTCTAGTTTGACAACTCACAAATGTCTTTCTGAAGGACCTAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCTTTCTAGTTTGACAACTCACAAATGTCTTTCTGAAGGACCTAG  784

seq1  GAGCCATCCCTTTGACATAGAATCATTAAGACCACGCTGCCTCTCCAAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCATCCCTTTGACATAGAATCATTAAGACCACGCTGCCTCTCCAAGT  834

seq1  GTCTCTTTGAAAGTAGCAGCCTGTTTGGACAGGCATCAGAAAGCCTAATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTTGAAAGTAGCAGCCTGTTTGGACAGGCATCAGAAAGCCTAATC  884

seq1  ACAGCCAAAATCATTTGAAAACACGGGACCCAACACTGTGGGCATTGGCC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCAAAATCATTTGAAAACACGGGACCCAACACTGTGGGCATTGGCC  934

seq1  TCAACCACTGGCCCTTCTCCATCACTAAGGCACCCTGAATCAAGTCTCCC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCACTGGCCCTTCTCCATCACTAAGGCACCCTGAATCAAGTCTCCC  984

seq1  TTATATGCTTAGTTTTGTTCAGTACTGTATTTGCTTTAACAGGAGGTCAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCTTAGTTTTGTTCAGTACTGTATTTGCTTTAACAGGAGGTCAT  1034

seq1  TACTCCTATGAATGACATAGTATTTCATGGAGAAAGGAGAAAGCTTTTCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCCTATGAATGACATAGTATTTCATGGAGAAAGGAGAAAGCTTTTCC  1084

seq1  CTTGCTGCTCCAAGGAGCTATTTCTCTGAGAATACAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGCTCCAAGGAGCTATTTCTCTGAGAATACAGAATTC  1126