BAC Information

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BAC

Clone NameB6Ng01-339B02
Chromosome16 (Build37)
Map Location 11,748,869 - 11,750,012
singlet/doubletsinglet
Overlap gene4933437K13Rik
Upstream geneSocs1, Tnp2, Prm3, Prm2, Prm1, A630055G03Rik, Litaf, LOC100043147, LOC100042597, Snn, Txndc11, Zc3h7a, LOC665450, LOC622271, Rsl1d1, Gspt1, Tnfrsf17, LOC100043171
Downstream geneC530044N13Rik, 2700045P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339B02.bB6Ng01-339B02.g
ACCGA123166GA123167
length1,148396
definitionB6Ng01-339B02.b B6Ng01-339B02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctccagactagagcatcccctgcctccctgctggcgagaatggaa
gttgctaccggggaagcaggcagcccaggcacacacctgcctctgatgcg
agagtggggtctgaatggcacctcttctgcctgcccagcaaggcagccca
gagtgtctggataccggaagcgcggcatatgagacgggctggtgcaggca
gtggctctctcatcctctgtcacttctgtccactgtcttcagcctaagca
gatccccattttgatttttagggctgaacccttggcctgtgaagccagtg
gcaacatcagtgcaattaggtgttgccacaaatggaagtcttccctgggc
cattttctgcctttataactcaagatctcagaggcctcatcctaagaata
gccaactgtgggtaggggacatagacgacaaggcctggcagagtttgcac
tgtgctcaaggagcagctgctgctaagatggccctgagtgctgggcagga
gagggccaatggggcgcaggagttggggcatttctaaaggaagggcctag
ctgctctgacactcatgtgccctctctgagctctggttcctctcccctgg
acctcagacctcttcagcactgtcagtggatctgcccagggatgagccga
agagcagcatctttgttggatgcctgactgacaggcaagctgaggtgaca
atgtctgtaggtcagctggactacttaggtacccagaggttacctaagat
acaaatgaaggccactgtgttaggtgccactgcagtgacctccaagcctg
ccggttgaggaaatggcagcatgccctgaagatgtacaggtagagcaggg
aggctttgagaccaggtacctgttgcttatagacatctgtggtagtgcta
ctagttctcctttcaaatggcctgctgagacttcagaaaaacccctgagc
ctccttcttgctctcaatgttcataaagtaggggaacccaagcttctggg
ggctagatgcagtccccacctgcctgtgttgagttcttttgcatgggctt
gcatgtaaggttcattcctgtacttacagatcccaaagaataggagatgt
tacgaagtccttgtccagaacaggtgagaacagagatctgttcctggg
atcattcttaatagctgagtacattgtgaaaatgtacattttctgtatcc
attcctctgttgagggccatctgggttctttccagtttctggctattata
aataaggctgctatgaacatagtggagcatgtgtccttaactgccccacc
tggggatccatcccatatacaaccatcaaacccagacactattgcatatg
ccagaaagattttgctgacagcaccctgacatagctctctcttgtgaggc
tgtgccaatgtctggaaaatacagaagtggatgctcacagtcacctattg
gacggcacacagggcccctaatgaaggagttagagaaagtacccaaggag
ctgaaggggtctgaaaccctataggaggaactatatgaactaacca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_11748869_11750012
seq2: B6Ng01-339B02.b_48_1195

seq1  GAATTCTCCAGACTAGAGCATCCCCTGCCTCCCTGCTGGCGAGAATGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCAGACTAGAGCATCCCCTGCCTCCCTGCTGGCGAGAATGGAA  50

seq1  GTTGCTACCGGGGAAGCAGGCAGCCCAGGCACACACCTGCCTCTGATGCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTACCGGGGAAGCAGGCAGCCCAGGCACACACCTGCCTCTGATGCG  100

seq1  AGAGTGGGGTCTGAATGGCACCTCTTCTGCCTGCCCAGCAAGGCAGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGGGTCTGAATGGCACCTCTTCTGCCTGCCCAGCAAGGCAGCCCA  150

seq1  GAGTGTCTGGATACCGGAAGCGCGGCATATGAGACGGGCTGGTGCAGGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCTGGATACCGGAAGCGCGGCATATGAGACGGGCTGGTGCAGGCA  200

seq1  GTGGCTCTCTCATCCTCTGTCACTTCTGTCCACTGTCTTCAGCCTAAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCTCTCATCCTCTGTCACTTCTGTCCACTGTCTTCAGCCTAAGCA  250

seq1  GATCCCCATTTTGATTTTTAGGGCTGAACCCTTGGCCTGTGAAGCCAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCATTTTGATTTTTAGGGCTGAACCCTTGGCCTGTGAAGCCAGTG  300

seq1  GCAACATCAGTGCAATTAGGTGTTGCCACAAATGGAAGTCTTCCCTGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCAGTGCAATTAGGTGTTGCCACAAATGGAAGTCTTCCCTGGGC  350

seq1  CATTTTCTGCCTTTATAACTCAAGATCTCAGAGGCCTCATCCTAAGAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTGCCTTTATAACTCAAGATCTCAGAGGCCTCATCCTAAGAATA  400

seq1  GCCAACTGTGGGTAGGGGACATAGACGACAAGGCCTGGCAGAGTTTGCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTGTGGGTAGGGGACATAGACGACAAGGCCTGGCAGAGTTTGCAC  450

seq1  TGTGCTCAAGGAGCAGCTGCTGCTAAGATGGCCCTGAGTGCTGGGCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTCAAGGAGCAGCTGCTGCTAAGATGGCCCTGAGTGCTGGGCAGGA  500

seq1  GAGGGCCAATGGGGCGCAGGAGTTGGGGCATTTCTAAAGGAAGGGCCTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCCAATGGGGCGCAGGAGTTGGGGCATTTCTAAAGGAAGGGCCTAG  550

seq1  CTGCTCTGACACTCATGTGCCCTCTCTGAGCTCTGGTTCCTCTCCCCTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTGACACTCATGTGCCCTCTCTGAGCTCTGGTTCCTCTCCCCTGG  600

seq1  ACCTCAGACCTCTTCAGCACTGTCAGTGGATCTGCCCAGGGATGAGCCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGACCTCTTCAGCACTGTCAGTGGATCTGCCCAGGGATGAGCCGA  650

seq1  AGAGCAGCATCTTTGTTGGATGCCTGACTGACAGGCAAGCTGAGGTGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGCATCTTTGTTGGATGCCTGACTGACAGGCAAGCTGAGGTGACA  700

seq1  ATGTCTGTAGGTCAGCTGGACTACTTAGGTACCCAGAGGTTACCTAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGTAGGTCAGCTGGACTACTTAGGTACCCAGAGGTTACCTAAGAT  750

seq1  ACAAATGAAGGCCACTGTGTTAGGTGCCACTGCAGTGACCTCCAAGCCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGAAGGCCACTGTGTTAGGTGCCACTGCAGTGACCTCCAAGCCTG  800

seq1  CCGGTTGAGGAAATGGCAGCATGCCCTGAAGATGTACAGGTAGAGCAGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGTTGAGGAAATGGCAGCATGCCCTGAAGATGTACAGGTAGAGCAGGG  850

seq1  AGGCTTTGAGACCAGGTACCTGTTGCTTATAGACATCTGTGGTAGTGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTGAGACCAGGTACCTGTTGCTTATAGACATCTGTGGTAGTGCTA  900

seq1  CTAGTTCTCCTTTCAAATGGCCTGCTGAGACTTCAG-AAAACCCCTGAGC  949
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTAGTTCTCCTTTCAAATGGCCTGCTGAGACTTCAGAAAAACCCCTGAGC  950

seq1  CTCCT--CTGCTCTCAATG-TCATAAAGTAGGGGAA-CCAAGC-TCT-GG  993
      |||||   ||||||||||| |||||||||||||||| |||||| ||| ||
seq2  CTCCTTCTTGCTCTCAATGTTCATAAAGTAGGGGAACCCAAGCTTCTGGG  1000

seq1  GGCTAGATGCAGT-CCCACCTGCCCTGTG-TGAG-TCCTTTGCATGGGGC  1040
      ||||||||||||| |||||||| |||||| |||| || ||||||||||  
seq2  GGCTAGATGCAGTCCCCACCTG-CCTGTGTTGAGTTCTTTTGCATGGG--  1047

seq1  CTTGCATGTAGGGTTTCATCCTGTAC-TACAGACCCCATAG-ATAGGAGA  1088
      |||||||||| ||||   |||||||| |||||| |||| || ||||||||
seq2  CTTGCATGTAAGGTTCATTCCTGTACTTACAGATCCCAAAGAATAGGAGA  1097

seq1  TGGTGACAGAAAGCCCCTGTCCCAGACCAGTGAAGAACAGAGAATCTGTG  1138
      || |   |  ||| || ||| ||||| |||   ||||||||| |||||| 
seq2  TGTT---ACGAAGTCCTTGT-CCAGAACAGGTGAGAACAGAG-ATCTGTT  1142

seq1  CCTGGG  1144
      ||||||
seq2  CCTGGG  1148