BAC Information

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BAC

Clone NameB6Ng01-339B23
Chromosome16 (Build37)
Map Location 37,784,813 - 37,785,756
singlet/doubletsinglet
Overlap geneFstl1
Upstream geneSlc15a2, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40, LOC100043252, Polq, Stxbp5l, Gtf2e1, Rabl3, Hgd, Ndufb4, LOC100043709
Downstream geneLOC100043264, Lrrc58, Gpr156, LOC100043271, LOC100043713, Gsk3b, Nr1i2, 4932425I24Rik, Cox17, LOC100043715, Popdc2, Pla1a, Adprh, Cd80, LOC667353, Ck-ps3, 4930455C21Rik, 9630046K23Rik, Tmem39a, Cdgap, B4galt4, LOC100043289, Upk1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339B23.bB6Ng01-339B23.g
ACCGA123204GA123205
length999945
definitionB6Ng01-339B23.b B6Ng01-339B23.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tggatatacaattgtcatatggttcatgaactcattatgtgcaactgtag
ctatagtctattttaggaaaacttaatcctagctcctgagaatgtaaaat
ggcacagtgtggtgcttccccaaacgaacatagagttgccgtattgccat
atgatttatcagttctatcttggatgttgtgatggtttgtatatgctctg
ctcagggagtggcattattagaaggtgcagcccttttggagtaagtgtag
ccttgttggagtaggtgtgtcattgtgggtgttggctttaagaccctcat
cctagctgactggaagccagtattctgctagcagccttcagatgaagatg
tagaacactcaactctgtccataccatgcctgcctagacattgccatgat
cctgcattgatgataatggactgaacctctgaacctgtaagccagtctca
attaaatattatcctttgtaagagttgtattggtcatggtgtctgttcac
agcagtaaaaccctaactaagacagatatataaccaaaagaactgacagc
tggggcttaaagaacattattctcaagaggaaaggtttgtaaccaatgta
agtgagtagcaatggatttctggataaatacattataatatgtatctgcc
atgcaatatgattcagccttaaaaatggttctgacacacactattacaac
atgtatgagctttgaagacatggtgctaagtaaaataagctagttcctga
aggcttaatactgtgtaatctcatgtggtatgcctagaatagtcaaaatc
acagagacagacgggagaatgggggctgtcacaggttgtgggaggaaagt
gtaatagtgggggattaaaagattcaagacgtccttggaggcaggaacac
aaactgctgggaatggagaagagcaatggttgaacataatgtgattgtac
tcatacatacactgggcatttaaatggttcaaatatactccatggtaag
gaattctttcctacagaattcagaggaggtttgaaaatctcattcaacaa
cactccttgtagccattagcaatcagtcagagtccctgtgtgagatgaaa
gctatttgtcatttctgctggaatactcaattcagtttggcaagcaccga
caatttttaactgaaattaggataattagatgggagacttcaggattgta
tgactgacatagacaacagagagaagaagagctgctggaactgatgttga
aagtctcaggagaagccatatacaagtttcaggcccaagtaactaagtaa
aacaaaccctttcatgctggccatcagtgaggatgcagcagtgagccgtt
tcttggctgctctaacgaaatgcacccttgccctagctaagactggaaga
gctgctgctatcgcagaaagcatcttctgcattagcagagtctggcagta
acttgctaatagaacactctctaggtagttggagtacaaaatatagccta
taaatttgcattttctgctttggttgaaagatttccgtgtaatctcctca
cagactttttatgtcctcatttggaagtaataactattacactagctcca
ggattaattttaaatttatgatgcctggtatgttctttaaatagtgtgcc
aggcactatttgtgaccaatcaggccattgccagatgaactatgtgacat
atgacaaaagctatgttgtactgcaggcacatgtgtgtgttcttgtgtgt
gtgtgcgcacgtgtgcatgtgcatgtgtgtgtctgtgtatgtctttctgt
gtgaatgtgtgtgtatgtgcatgtgtgtacatgtctatgtacattgcatg
catgcgtgtgtgtttatgtgtgtcccatgtatgtgtgtctgtgtgtgtct
ttggtgtgtgtgtgtgtctgagtgtgtgtgatgggatatttgaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_37784813_37785756
seq2: B6Ng01-339B23.g_65_1009

seq1  GAATTCTTTCCTACAGAATTCAGAGGAGGTTTGAAAATCTCATTCAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCTACAGAATTCAGAGGAGGTTTGAAAATCTCATTCAACAA  50

seq1  CACTCCTTGTAGCCATTAGCAATCAGTCAGAGTCCCTGTGTGAGATGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCTTGTAGCCATTAGCAATCAGTCAGAGTCCCTGTGTGAGATGAAA  100

seq1  GCTATTTGTCATTTCTGCTGGAATACTCAATTCAGTTTGGCAAGCACCGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGTCATTTCTGCTGGAATACTCAATTCAGTTTGGCAAGCACCGA  150

seq1  CAATTTTTAACTGAAATTAGGATAATTAGATGGGAGACTTCAGGATTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTAACTGAAATTAGGATAATTAGATGGGAGACTTCAGGATTGTA  200

seq1  TGACTGACATAGACAACAGAGAGAAGAAGAGCTGCTGGAACTGATGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGACATAGACAACAGAGAGAAGAAGAGCTGCTGGAACTGATGTTGA  250

seq1  AAGTCTCAGGAGAAGCCATATACAAGTTTCAGGCCCAAGTAACTAAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTCAGGAGAAGCCATATACAAGTTTCAGGCCCAAGTAACTAAGTAA  300

seq1  AACAAACCCTTTCATGCTGGCCATCAGTGAGGATGCAGCAGTGAGCCGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACCCTTTCATGCTGGCCATCAGTGAGGATGCAGCAGTGAGCCGTT  350

seq1  TCTTGGCTGCTCTAACGAAATGCACCCTTGCCCTAGCTAAGACTGGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTGCTCTAACGAAATGCACCCTTGCCCTAGCTAAGACTGGAAGA  400

seq1  GCTGCTGCTATCGCAGAAAGCATCTTCTGCATTAGCAGAGTCTGGCAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGCTATCGCAGAAAGCATCTTCTGCATTAGCAGAGTCTGGCAGTA  450

seq1  ACTTGCTAATAGAACACTCTCTAGGTAGTTGGAGTACAAAATATAGCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTAATAGAACACTCTCTAGGTAGTTGGAGTACAAAATATAGCCTA  500

seq1  TAAATTTGCATTTTCTGCTTTGGTTGAAAGATTTCCGTGTAATCTCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTGCATTTTCTGCTTTGGTTGAAAGATTTCCGTGTAATCTCCTCA  550

seq1  CAGACTTTTTATGTCCTCATTTGGAAGTAATAACTATTACACTAGCTCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTTTTATGTCCTCATTTGGAAGTAATAACTATTACACTAGCTCCA  600

seq1  GGATTAATTTTAAATTTATGATGCCTGGTATGTTCTTTAAATAGTGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAATTTTAAATTTATGATGCCTGGTATGTTCTTTAAATAGTGTGCC  650

seq1  AGGCACTATTTGTGACCAATCAGGCCATTGCCAGATGAACTATGTGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTATTTGTGACCAATCAGGCCATTGCCAGATGAACTATGTGACAT  700

seq1  ATGACAAAAGCTATGTTGTACTGCAGGCACATGTGTGTGTTCTTGTGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAAGCTATGTTGTACTGCAGGCACATGTGTGTGTTCTTGTGTGT  750

seq1  GTGTGCGCACGTGTGCATGTGCATGTGTGTGTCTGTGTATGTCTTTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGCGCACGTGTGCATGTGCATGTGTGTGTCTGTGTATGTCTTTCTGT  800

seq1  GTGAATGTGTGTGTATGTGCATGTGTGTACATGTCTATGTACATTGCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTGTGTGTATGTGCATGTGTGTACATGTCTATGTACATTGCATG  850

seq1  CATGCGTGTGTGTTTATGTGTGTCCCATGTATGTGTGTCTGTGTGTGTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGTGTGTGTTTATGTGTGTCCCATGTATGTGTGTCTGTGTGTGTCT  900

seq1  TT-GTGTGTGTGTGTGTCTGTGTGTGTGTGATGGGATATTTGAAT  944
      || ||||||||||||||||| ||||||||||||||||||||||||
seq2  TTGGTGTGTGTGTGTGTCTGAGTGTGTGTGATGGGATATTTGAAT  945