BAC Information

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BAC

Clone NameB6Ng01-341D08
Chromosome16 (Build37)
Map Location 12,186,783 - 12,316,856
singlet/doubletdoublet
Overlap gene2700045P11Rik
Upstream geneLOC622271, Rsl1d1, Gspt1, Tnfrsf17, 4933437K13Rik, LOC100043171, C530044N13Rik
Downstream geneEG622509, LOC622553, Ercc4, Gt4-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341D08.bB6Ng01-341D08.g
ACCGA124662GA124663
length1,1571,184
definitionB6Ng01-341D08.b B6Ng01-341D08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,315,695 - 12,316,856)(12,186,783 - 12,187,971)
sequence
gaattcattatgaacaggtctgcattgaaagacataaaaaggttaccctt
caagtcaaaaggaaatgaaacagataaaagtctagttaaaaacaaagaaa
caaaaaaccatgagcaccagaaaaagtaaaaaataaaaaaataaatagaa
agaaaaagataaaagaaaatacaatgtgatggtttctctttctcataatt
atcataaaacaacactgactaaacaaaagcagccttgtgaattgggattt
aaagcagacatagaaataaaattacacaggccagtacataaagcagaggg
aggagggagtctctgtaatgaaatcccactccctaaggtaatgtttatgg
agtatgaaatttatactctgaagcagacattagaagaaggaatgtgggaa
gtgatccagggacaaatgtgatggggtgtagggtgaggagcagacagaag
ttatccggtgtgaagaataaaagagtatattctcactgtatatacattta
tataatttcagaaggtatagtcatagacaaagaacaaccactggaaacca
agagcatcctggtttctatcccattgttgtgataaaatactctgacgtga
gcaacttaagggagaaagggtttgtttcagcttacagttcaagatgcatc
taccataacaagtcattaccaataccaaattttatgacaaagagttttag
gaaaatgaaaaagtataacaaaagtaaacttcaccacaaatataccagca
tactaaaatagtgacagaaataaagaaataaacatcttaaattatactgg
gaggtgtgaaaagcccctctcaccagctgatagaggaagtgagaaattct
taacaagggtacaaaacttcaaaacaacaatgaaaaccaatgtgacaagc
tgatgtttgcataacccaaatttttttgctcactcaaaactgagtacaca
cattcttttcacatttgagtgagttttgctcactcaaaactgaagaacac
accattctttcaaggacttatgaaacattcaccaaggtaagatttatact
ggtgtactaaagtaccaataatttcaatctggtgaacctcatttttattt
ttaaagaatatgtgactggggtggcttggggccattacttccctcctcca
ctcactt

gaattcagagcctactagaagagactgatgcgaggcgaacgaaatgcttt
aaacagagggtgataatgattttctttgaggcagagaagccagttgacca
gtgtatgaatcttcagcaggaattcatggtgtgtgctggtcaccatacac
cagttatgactgtctgttcttatagacacttcctctttgtttgattcagc
ttcagaaattgaatccaataagggtgatatgccatgaaatcttatttatt
cacaatgaagatctagctatcaagaaagcaatgttaaagcatgaaaattg
attctttctcatgagccaatctacatgggccattaaaatccaaagatcta
gctgtcttgctccacaagaatccattagagttagttctgccatagcctgc
gttcaatgactttacattgagggactgcatacttgcagttggccaggctg
tggggctggggagtatttataccatggtagttggcaggtgttgccaccat
gtcattttttatcattttgatagctagttgttaggtttatcgatatacca
ctgatctaacgcatgtgtcataaaatgtgcccagactgggtgggtggagc
attgtatgtcctggaagggacatgcctgatctgttcattcaccctcttta
ctatgtggagactaggaacgaaaccctctaagggtttagtattctatcca
aaccttggagatgaaaagtacttacctgtttccctaattccgtgacttaa
atgacctgcccctgttcaggtattcacctgtgttctggagcttctaggtt
catgtgctatctatcatgcagtaggttttaggttccatggactttggtca
tgtgcatgttaaaggggtgagagatgagacatgaagtaaatgagaagagg
ctgctctcactaactgactttagaaattgtcatttagtgtcttaaaaaaa
aaaacccaataggtttagtgaatacttgaaatttatgcccaactggcctt
cagcctgaccccaggtcctgctttggacgaataagacagcagagccaccc
acctaagtggatttgctctcttttataagcaatataagtggccaaaaata
agcttctttccattagtgaaatggaggctccctcatccaacttctaattt
accagcgaaggaaaaatacaggccacctgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_12315695_12316856
seq2: B6Ng01-341D08.b_46_1202 (reverse)

seq1  AAGTGATGGGAGGAGGGAAGTAAATGCCACCAAGCACACCCAGTCACATT  50
      ||||||  ||||||||||||| |||| | ||||||   |||||||||| |
seq2  AAGTGAGTGGAGGAGGGAAGT-AATGGCCCCAAGCCACCCCAGTCACA-T  48

seq1  ATTTCCTTTAAAATATAAAAATGA-GTTCACCAGATGGAAATTTATTGAT  99
      |||  |||||||| |||||||||| ||||||||||| |||| |||||| |
seq2  ATT--CTTTAAAA-ATAAAAATGAGGTTCACCAGATTGAAA-TTATTGGT  94

seq1  ACTTTAGTACA-CAGTATACATCCTACCTTGGTGAATGTTTCATAAGTCC  148
      ||||||||||| ||||||| ||| ||||||||||||||||||||||||||
seq2  ACTTTAGTACACCAGTATAAATCTTACCTTGGTGAATGTTTCATAAGTCC  144

seq1  TTGAAAAGAAT-GTGTGTTCTTCAGTTTTGAGTGAGCAAAACTCACTCAA  197
      ||| ||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTG-AAAGAATGGTGTGTTCTTCAGTTTTGAGTGAGCAAAACTCACTCAA  193

seq1  ATGTG-AAAGAATGTGTGTACTTCAGTTTTGAGTGAGCAAAAAAATTTGG  246
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  ATGTGAAAAGAATGTGTGTAC-TCAGTTTTGAGTGAGCAAAAAAATTTGG  242

seq1  GTTATGCAAACATCAGCTTGGTCACATTGGTTTTCATTGTTGTTTTGAAG  296
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTTATGCAAACATCAGCTT-GTCACATTGGTTTTCATTGTTGTTTTGAAG  291

seq1  TTTTGTACCCTTGTTAAGAATTTCTCACTTCCTCTATCAGCTGGTGAGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTACCCTTGTTAAGAATTTCTCACTTCCTCTATCAGCTGGTGAGAG  341

seq1  GGGCTTTTCACACCTCCCAGTATAATTTAAGATGTTTATTTCTTTATTTC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTTCACACCTCCCAGTATAATTTAAGATGTTTATTTCTTTATTTC  391

seq1  TGTCACTATTTTAGTATGCTGGTATATTTGTGGTGAAGTTTACTTTTGTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTATTTTAGTATGCTGGTATATTTGTGGTGAAGTTTACTTTTGTT  441

seq1  ATACTTTTTCATTTTCCTAAAACTCTTTGTCATAAAATTTGGTATTGGTA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTTCATTTTCCTAAAACTCTTTGTCATAAAATTTGGTATTGGTA  491

seq1  ATGACTTGTTATGGTAGATGCATCTTGAACTGTAAGCTGAAACAAACCCT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTTGTTATGGTAGATGCATCTTGAACTGTAAGCTGAAACAAACCCT  541

seq1  TTCTCCCTTAAGTTGCTCACGTCAGAGTATTTTATCACAACAATGGGATA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCTTAAGTTGCTCACGTCAGAGTATTTTATCACAACAATGGGATA  591

seq1  GAAACCAGGATGCTCTTGGTTTCCAGTGGTTGTTCTTTGTCTATGACTAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCAGGATGCTCTTGGTTTCCAGTGGTTGTTCTTTGTCTATGACTAT  641

seq1  ACCTTCTGAAATTATATAAATGTATATACAGTGAGAATATACTCTTTTAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTGAAATTATATAAATGTATATACAGTGAGAATATACTCTTTTAT  691

seq1  TCTTCACACCGGATAACTTCTGTCTGCTCCTCACCCTACACCCCATCACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACACCGGATAACTTCTGTCTGCTCCTCACCCTACACCCCATCACA  741

seq1  TTTGTCCCTGGATCACTTCCCACATTCCTTCTTCTAATGTCTGCTTCAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCTGGATCACTTCCCACATTCCTTCTTCTAATGTCTGCTTCAGA  791

seq1  GTATAAATTTCATACTCCATAAACATTACCTTAGGGAGTGGGATTTCATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATTTCATACTCCATAAACATTACCTTAGGGAGTGGGATTTCATT  841

seq1  ACAGAGACTCCCTCCTCCCTCTGCTTTATGTACTGGCCTGTGTAATTTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACTCCCTCCTCCCTCTGCTTTATGTACTGGCCTGTGTAATTTTA  891

seq1  TTTCTATGTCTGCTTTAAATCCCAATTCACAAGGCTGCTTTTGTTTAGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATGTCTGCTTTAAATCCCAATTCACAAGGCTGCTTTTGTTTAGTC  941

seq1  AGTGTTGTTTTATGATAATTATGAGAAAGAGAAACCATCACATTGTATTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTGTTTTATGATAATTATGAGAAAGAGAAACCATCACATTGTATTT  991

seq1  TCTTTTATCTTTTTCTTTCTATTTATTTTTTTATTTTTTACTTTTTCTGG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATCTTTTTCTTTCTATTTATTTTTTTATTTTTTACTTTTTCTGG  1041

seq1  TGCTCATGGTTTTTTGTTTCTTTGTTTTTAACTAGACTTTTATCTGTTTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATGGTTTTTTGTTTCTTTGTTTTTAACTAGACTTTTATCTGTTTC  1091

seq1  ATTTCCTTTTGACTTGAAGGGTAACCTTTTTATGTCTTTCAATGCAGACC  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTTTTGACTTGAAGGGTAACCTTTTTATGTCTTTCAATGCAGACC  1141

seq1  TGTTCATAATGAATTC  1162
      ||||||||||||||||
seq2  TGTTCATAATGAATTC  1157


seq1: chr16_12186783_12187971
seq2: B6Ng01-341D08.g_69_1252

seq1  GAATTCAGAGCCTACTAGAAGAGACTGATGCGAGGCGAACGAAATGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCCTACTAGAAGAGACTGATGCGAGGCGAACGAAATGCTTT  50

seq1  AAACAGAGGGTGATAATGATTTTCTTTGAGGCAGAGAAGCCAGTTGACCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGGGTGATAATGATTTTCTTTGAGGCAGAGAAGCCAGTTGACCA  100

seq1  GTGTATGAATCTTCAGCAGGAATTCATGGTGTGTGCTGGTCACCATACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGAATCTTCAGCAGGAATTCATGGTGTGTGCTGGTCACCATACAC  150

seq1  CAGTTATGACTGTCTGTTCTTATAGACACTTCCTCTTTGTTTGATTCAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATGACTGTCTGTTCTTATAGACACTTCCTCTTTGTTTGATTCAGC  200

seq1  TTCAGAAATTGAATCCAATAAGGGTGATATGCCATGAAATCTTATTTATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAAATTGAATCCAATAAGGGTGATATGCCATGAAATCTTATTTATT  250

seq1  CACAATGAAGATCTAGCTATCAAGAAAGCAATGTTAAAGCATGAAAATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGAAGATCTAGCTATCAAGAAAGCAATGTTAAAGCATGAAAATTG  300

seq1  ATTCTTTCTCATGAGCCAATCTACATGGGCCATTAAAATCCAAAGATCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCTCATGAGCCAATCTACATGGGCCATTAAAATCCAAAGATCTA  350

seq1  GCTGTCTTGCTCCACAAGAATCCATTAGAGTTAGTTCTGCCATAGCCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTTGCTCCACAAGAATCCATTAGAGTTAGTTCTGCCATAGCCTGC  400

seq1  GTTCAATGACTTTACATTGAGGGACTGCATACTTGCAGTTGGCCAGGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATGACTTTACATTGAGGGACTGCATACTTGCAGTTGGCCAGGCTG  450

seq1  TGGGGCTGGGGAGTATTTATACCATGGTAGTTGGCAGGTGTTGCCACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGGGGAGTATTTATACCATGGTAGTTGGCAGGTGTTGCCACCAT  500

seq1  GTCATTTTTTATCATTTTGATAGCTAGTTGTTAGGTTTATCGATATACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTTTTATCATTTTGATAGCTAGTTGTTAGGTTTATCGATATACCA  550

seq1  CTGATCTAACGCATGTGTCATAAAATGTGCCCAGACTGGGTGGGTGGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCTAACGCATGTGTCATAAAATGTGCCCAGACTGGGTGGGTGGAGC  600

seq1  ATTGTATGTCCTGGAAGGGACATGCCTGATCTGTTCATTCACCCTCTTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATGTCCTGGAAGGGACATGCCTGATCTGTTCATTCACCCTCTTTA  650

seq1  CTATGTGGAGACTAGGAACGAAACCCTCTAAGGGTTTAGTATTCTATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTGGAGACTAGGAACGAAACCCTCTAAGGGTTTAGTATTCTATCCA  700

seq1  AACCTTGGAGATGAAAAGTACTTACCTGTTTCCCTAATTCCGTGACTTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTGGAGATGAAAAGTACTTACCTGTTTCCCTAATTCCGTGACTTAA  750

seq1  ATGACCTGCCCCTGTTCAGGTATTCACCTGTGTTCTGGAGCTTCTAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTGCCCCTGTTCAGGTATTCACCTGTGTTCTGGAGCTTCTAGGTT  800

seq1  CATGTGCTATCTATCATGCAGTAGGTTTTAGGTTCCATGGACTTTGGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCTATCTATCATGCAGTAGGTTTTAGGTTCCATGGACTTTGGTCA  850

seq1  TGTGCATGTTAAAGGGGTGAGAGATGAGACATGAAGTAAATGAGAAGAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGTTAAAGGGGTGAGAGATGAGACATGAAGTAAATGAGAAGAGG  900

seq1  CTGCTCTCACTAACTGACTTTAGAAATTGTCATTTAGTGTCTTTAAAAAA  950
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  CTGCTCTCACTAACTGACTTTAGAAATTGTCATTTAGTGTCTT--AAAAA  948

seq1  AAAAAACCCAATAGGTTTAGTG-ATACTTGAAATTTATGCCCAAACTGGC  999
      |||||||||||||||||||||| ||||||||||||||||||| |||||||
seq2  AAAAAACCCAATAGGTTTAGTGAATACTTGAAATTTATGCCC-AACTGGC  997

seq1  CTTCAG-CTGACCCCAGGTCTTGCTTTGGACAGATAAGGACAGCAGAAGC  1048
      |||||| ||||||||||||| ||||||||||  |||| |||||||| |||
seq2  CTTCAGCCTGACCCCAGGTCCTGCTTTGGACGAATAA-GACAGCAG-AGC  1045

seq1  CACC--ACTAAGTGGATTTTGCTCTTTTTAATTAGGCATAT-AGT-GCCA  1094
      ||||   ||||||||| |||||||| ||| || ||  |||| ||| ||||
seq2  CACCCACCTAAGTGGA-TTTGCTCTCTTTTATAAGCAATATAAGTGGCCA  1094

seq1  AAAATAAGTTTCTTT-CATTAGTGAAAATGAGGCTCCTTCATCAACTTTC  1143
      |||||||| |||||| |||||||||||  |||||||| ||||| |  |||
seq2  AAAATAAGCTTCTTTCCATTAGTGAAATGGAGGCTCCCTCATCCAACTTC  1144

seq1  ATATTATACAAAGGAAGAAGGGAAAAAAATACAGG-CAACTGTGTGT  1189
       || | ||| |  ||||       ||||||||||| || ||||||||
seq2  -TAATTTACCAGCGAAG------GAAAAATACAGGCCACCTGTGTGT  1184


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