BAC Information

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BAC

Clone NameB6Ng01-345G21
Chromosome16 (Build37)
Map Location 30,047,917 - 30,048,864
singlet/doubletsinglet
Overlap genenone
Upstream geneHrasls, Atp13a5, Atp13a4, Opa1, Gm1968, LOC100043102, 9030404E10Rik
Downstream geneHes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-345G21.g
ACCGA127628
length952
definitionB6Ng01-345G21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaaggcactattagggtcttagggttggatttgaggtgacatct
ccctccaccagggcagtgttggagaaatgtgggggcatcaggaaagggta
gttggtctggttgacaggggagagttgggagcattgaaatccatgttttt
ttttaaaataattttaaaaatttaatgtgttttgtatatctcttcaccca
tatccccacccacctgcctatctatccatccatccatccgtccatccatc
catctccccatctacacgttcatctctctccatccatctctctctctcta
atttgtgtagcgcgcgtgtgtgtgtgtgatacccaaggaagctagaaaag
ggtgtcagatcccttgacactgcagtcacagatggttgtgagctcctatg
tggatgctgggaactgaaccctggggctctgaaatagcaacaaatcgtct
gcacttctgagccatctctctatccctgcataaacaaaattacattttgt
gtacgtgtgtttgtatgtgtgtacaacttgaaaatgtcagtctccctttt
tactgcgtggattctggggatggaccttggattgttaggtttgtctgcca
ctatctgacgctgtatatctgctgagctatcttgctgcccaccttttctg
tgttacacccagaacctgatggtgagtctaattctagaaatgaagtgata
taggatctgggttccagagccatctctgcacactctgtcgctgggcactc
ctctgatgaacctacaccgccaggagaggtataaactggtagacagtcaa
attgacttgaatgagaaacactcatgaaggtggtataagtcaatctctct
gagtgcttcgaaacacaacttgagagggtgtgtgtgatgtagttgcatat
acatatcagtagagattctagattaatgcatggattacatgatgtagatg
at
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30047917_30048864
seq2: B6Ng01-345G21.g_62_1013 (reverse)

seq1  ATCAT-GACATCATGTTAATCCATTCATTAGGTCTGGAA-CCCTCTTGAT  48
      |||||  |||||||| |||||||| |||||  ||| ||| | ||  ||||
seq2  ATCATCTACATCATG-TAATCCATGCATTA-ATCTAGAATCTCTACTGAT  48

seq1  CTGTCTCTGGAAACAAATCACAGACACCCTC-AGAGTTGTGCTCCG-AGC  96
       ||| | || ||  | |||||| ||||||||   ||||||| | || |||
seq2  ATGTATATGCAACTACATCACACACACCCTCTCAAGTTGTGTTTCGAAGC  98

seq1  ACACAGAGAGATGTGCTTATCCAACCTTC-TGGGTGTTTCTCAATCCTGT  145
      || |||||||||   ||||| | |||||| || |||||||||| ||  ||
seq2  ACTCAGAGAGATTGACTTATACCACCTTCATGAGTGTTTCTCATTCAAGT  148

seq1  CAAGTTGACAGTCTACCAGTTTCTACCTCTCCTGGCGGTGTCTGCTCATC  195
      ||| ||||| |||||||||||| ||||||||||||||||||  | |||||
seq2  CAATTTGACTGTCTACCAGTTTATACCTCTCCTGGCGGTGTAGGTTCATC  198

seq1  AGAGGAGTACACAGTGACAGAGTGTGCAGAGATGGCTCTGGAACCCAGAT  245
      |||||||| | ||| |||||||||||||||||||||||||||||||||||
seq2  AGAGGAGTGCCCAGCGACAGAGTGTGCAGAGATGGCTCTGGAACCCAGAT  248

seq1  CCTCTCTCATTTCCTTTCTAAAACTTACCACACTTACAGATTCTTGGGGT  295
      ||| | ||| ||| |||||| || |   | |||   ||| |||| || ||
seq2  CCTATATCACTTCATTTCTAGAATTAGACTCACCATCAGGTTCTGGGTGT  298

seq1  AACACAGAAAAGGTGGGCAGCAAGATAGCTCAGCAGATATAAAGCCTCAG  345
      ||||||||||||||||||||||||||||||||||||||||| ||| ||||
seq2  AACACAGAAAAGGTGGGCAGCAAGATAGCTCAGCAGATATACAGCGTCAG  348

seq1  ATACTTGCCGACAAACCTAACAACCCAAGGTCCATCCCCAGAATCCACGC  395
      ||| | || |||||||||||||| ||||||||||||||||||||||||||
seq2  ATAGTGGCAGACAAACCTAACAATCCAAGGTCCATCCCCAGAATCCACGC  398

seq1  AGTAAAAAGGGAGACTGACATTTTCAAGTTGTACACACATACAAACACAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGGGAGACTGACATTTTCAAGTTGTACACACATACAAACACAC  448

seq1  GTACACAAAATGTAATTTTGTTTATGCAGGGATAGAGAGATGGCTCAGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAAAATGTAATTTTGTTTATGCAGGGATAGAGAGATGGCTCAGAA  498

seq1  GTGCAGATGACTTGCTGCTCTTCCAGAGCACCAGGGTTCAGTTCCCAGCA  545
      ||||||| || ||| |||| || |||||| ||||||||||||||||||||
seq2  GTGCAGACGATTTGTTGCTATTTCAGAGCCCCAGGGTTCAGTTCCCAGCA  548

seq1  TCCACATAGGAGCTCACAACCATCTGTGACTGCAGTGTCAAGGGATCTGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATAGGAGCTCACAACCATCTGTGACTGCAGTGTCAAGGGATCTGA  598

seq1  CACCCTTTTCTAGCTTCCTTGGGTATCACACACACACACGCGCGCTACAC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTTCTAGCTTCCTTGGGTATCACACACACACACGCGCGCTACAC  648

seq1  AAATTAGAGAGAGAGAGATGGATGGAGAGAGATGAATGGGTAGATGGGGA  695
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  AAATTAGAGAGAGAGAGATGGATGGAGAGAGATGAACGTGTAGATGGGGA  698

seq1  GATGGATGGATGGATGGATGGATGGATGGATAGATAGGCAGGTGGGTGGG  745
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATGGATGGATGGACGGATGGATGGATGGATAGATAGGCAGGTGGGTGGG  748

seq1  GATATGGGTGAAGAGATATACAAAACACATTAAATTTTTAAAATTATTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGGTGAAGAGATATACAAAACACATTAAATTTTTAAAATTATTTT  798

seq1  AAAAAAATACATGGATACCAATGCTCCCAACTCTCCCCTGTCAACCAGAC  845
      ||||||| ||||||||  ||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACATGGATTTCAATGCTCCCAACTCTCCCCTGTCAACCAGAC  848

seq1  CAACTACCCTTTCCTGATGCCCCCACATTTCTCCAACACTGCCCTGGTGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTACCCTTTCCTGATGCCCCCACATTTCTCCAACACTGCCCTGGTGG  898

seq1  AGGGAGATGTCACC-CAAATCCAACCCTAAGACCCTAATCGTGCCTTGGA  944
      |||||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  AGGGAGATGTCACCTCAAATCCAACCCTAAGACCCTAATAGTGCCTTGGA  948

seq1  ATTC  948
      ||||
seq2  ATTC  952