BAC Information

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BAC

Clone NameB6Ng01-347F19
Chromosome16 (Build37)
Map Location 72,089,582 - 72,090,687
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneRobo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347F19.bB6Ng01-347F19.g
ACCGA128988GA128989
length1,2121,091
definitionB6Ng01-347F19.b B6Ng01-347F19.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctccttgcctatcagtcaaaaaatgcctaaggtgaggatgtatag
acagaagcactagtgggattgcccactgctacaaccactctggaaatcaa
tctggaggttcctcagaaaattgcagatagatctacctaaagacccagca
ataccactcttgggaatataaaaaaacaaacaaacaaacaaacaaacaaa
caaacaaacaaacaaacaaactgccctaccatgccacaggggaacgtgtt
ccatcatgccttatttgttatagccagaagatggaaataacccagatgtc
ccacgacagaagacgacagaagaatggatacagagactgtggttcattta
cacaatggaatactactcgctattaagaacgaggacctcctgagttttgc
agacaaatggatggaactagaaaataccatcctgagtgaggttactcaga
ccccaaagggcatggtggtatgtactcactaataaatggatattagcaaa
aaaaaaaaagtgccaaatacccaagatacaacccacagaactcaaaaagg
acaacaagctgagtccaaataagaacacctcagtcccacttgggtgagag
aagaaagggagtgtcctgcgagggaaagtggacagagggtaggggatgga
gaagggaacctgatctggtattggttgagggaaaaggaccgaagccctaa
ggtctagcagaaagaatggaaacaggcaacttcaggaggtagaagcttcg
ggggaccctccagaatgcaccagagactgggaggtgagagactctcagga
ctcaaaggatgggaccgtagatgaaatgccagacactagggagagggaac
ttatagaacccacctccagcagaaagacaggacatcaatagaaggaggaa
gttgcagtctgatagtcaaaacttcttaacaagacccatgattattcctg
tctgaaagactgcaaggatggaaatggagaggagactgagaaaagaatgc
ccagtgacatccccaaagtggatcagctcagagaggtccctagcctgaca
cttattactgagctatggagcgctcatcaaagaagctattcatgactgct
cttctggaagacacaacagagctgaaagagtcggaatgccaaattttgca
tcattcaatggacagagctgctgaaccctgtgtgatgtattaaggaaaag
ggctgtgtcagc
ttttgagtaatacaggcattaattttatttttttctgaacactcaattat
actaattggcatctgttagggtttaccatgtatatttatctaggaaaatt
gagaacaaataaaaaattgcacccatgattttaaatactactagctatgt
aagttttagatctggtcacatcatttttgactttggctattaggtctatt
ttataaagcttaatcatactagtattttatccccattaaattcaagctac
tctttaaatctctaaaaatgtgttagttgctcaggaagaaattatatttc
tagtggaaatgtagttattttctagagcaactaaacacatcaagattaga
atacacattactttttcgtaatgtctgaggtagaatccagagatttgtga
atgctgggtaggtataatacaatatcacaaagcttcatctctagtccatt
taagatatttgttaagaatgagcaacgtgaatctttcaggatgggtgact
ttgcagttttacaagctactatatttctagatgctcattgtagagtttat
gaaaagcagcacgctttgaattccatcaggcatttaatcagcatagctgt
gtgttttgaagaaacccttttggcttcaccttgtctcaaagctagcactc
tttttgactcttttcccttcttatactgtgcattcagagccatgaaaagc
ccagagccactgaatatagaccttttcctctaaaataaaataatgtatgc
aattagttactgctgagagcatgcagcacaactaaaaagtgttaaacact
agcatctcatctgtatccttcaataagtatacatatatcttaccgtattt
ttgcttccccactttctcatatcatctatagcagctttgaacatttattc
accacccagcagcctctcacacaaatcagcactgaaagcaaatatattgc
ttcaccatcttgaataaacgtttagcacagttaacaatttctttgcatgc
tgatcagccattttcataatcaggctctaaatatgtgctatgcctttaaa
ctttgccgaattactgcattaacgattggagcatgactagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72089582_72090687
seq2: B6Ng01-347F19.g_147_1237

seq1  TTTTGAGTAATACAGGCATTAATTTTATTTTTTTCTGAACACTCAATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGTAATACAGGCATTAATTTTATTTTTTTCTGAACACTCAATTAT  50

seq1  ACTAATTGGCATCTGTTAGGGTTTACCATGTATATTTATCTAGGAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATTGGCATCTGTTAGGGTTTACCATGTATATTTATCTAGGAAAATT  100

seq1  GAGAACAAATAAAAAATTGCACCCATGATTTTAAATACTACTAGCTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAATAAAAAATTGCACCCATGATTTTAAATACTACTAGCTATGT  150

seq1  AAGTTTTAGATCTGGTCACATCATTTTTGACTTTGGCTATTAGGTCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAGATCTGGTCACATCATTTTTGACTTTGGCTATTAGGTCTATT  200

seq1  TTATAAAGCTTAATCATACTAGTATTTTATCCCCATTAAATTCAAGCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAAGCTTAATCATACTAGTATTTTATCCCCATTAAATTCAAGCTAC  250

seq1  TCTTTAAATCTCTAAAAATGTGTTAGTTGCTCAGGAAGAAATTATATTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAATCTCTAAAAATGTGTTAGTTGCTCAGGAAGAAATTATATTTC  300

seq1  TAGTGGAAATGTAGTTATTTTCTAGAGCAACTAAACACATCAAGATTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGAAATGTAGTTATTTTCTAGAGCAACTAAACACATCAAGATTAGA  350

seq1  ATACACATTACTTTTTCGTAATGTCTGAGGTAGAATCCAGAGATTTGTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACATTACTTTTTCGTAATGTCTGAGGTAGAATCCAGAGATTTGTGA  400

seq1  ATGCTGGGTAGGTATAATACAATATCACAAAGCTTCATCTCTAGTCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGGTAGGTATAATACAATATCACAAAGCTTCATCTCTAGTCCATT  450

seq1  TAAGATATTTGTTAAGAATGAGCAACGTGAATCTTTCAGGATGGGTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATTTGTTAAGAATGAGCAACGTGAATCTTTCAGGATGGGTGACT  500

seq1  TTGCAGTTTTACAAGCTACTATATTTCTAGATGCTCATTGTAGAGTTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTTTTACAAGCTACTATATTTCTAGATGCTCATTGTAGAGTTTAT  550

seq1  GAAAAGCAGCACGCTTTGAATTCCATCAGGCATTTAATCAGCATAGCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGCAGCACGCTTTGAATTCCATCAGGCATTTAATCAGCATAGCTGT  600

seq1  GTGTTTTGAAGAAACCCTTTTGGCTTCACCTTGTCTCAAAGCTAGCACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTGAAGAAACCCTTTTGGCTTCACCTTGTCTCAAAGCTAGCACTC  650

seq1  TTTTTGACTCTTTTCCCTTCTTATACTGTGCATTCAGAGCCATGAAAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGACTCTTTTCCCTTCTTATACTGTGCATTCAGAGCCATGAAAAGC  700

seq1  CCAGAGCCACTGAATATAGACCTTTTCCTCTAAAATAAAATAATGTATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCCACTGAATATAGACCTTTTCCTCTAAAATAAAATAATGTATGC  750

seq1  AATTAGTTACTGCTGAGAGCATGCAGCACAACTAAAAAGTGTTAAACACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTACTGCTGAGAGCATGCAGCACAACTAAAAAGTGTTAAACACT  800

seq1  AGCATCTCATCTGTATCCTTCAATAAGTATACATATATCTTACCGTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCTCATCTGTATCCTTCAATAAGTATACATATATCTTACCGTATTT  850

seq1  TTGCTTCCCCACTTTCTCATATCATCTATAGCAGCTTTGAACATTTATTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTCCCCACTTTCTCATATCATCTATAGCAGCTTTGAACATTTATTC  900

seq1  ACCAACCCAGCAGCCTCTCAACACAAAATCAGCCACTGAAAGCAAATATA  950
      ||| ||||||||||||||| |||| ||||||| |||||||||||||||||
seq2  ACC-ACCCAGCAGCCTCTC-ACAC-AAATCAG-CACTGAAAGCAAATATA  946

seq1  TTGCTTCACCATCTTGAATAAACGTTTAGCACAAGTTAACAAATTTCTTT  1000
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TTGCTTCACCATCTTGAATAAACGTTTAGCAC-AGTTAAC-AATTTCTTT  994

seq1  GCATTGCTGATCAAGCCCATTTTCATAAATCAGGCTCTAAATATGTTGCT  1050
      ||| |||||||||   |||||||||| |||||||||||||||||| ||||
seq2  GCA-TGCTGATCA--GCCATTTTCAT-AATCAGGCTCTAAATATG-TGCT  1039

seq1  ATTGCTTTAAACTTTG-CGAATTACCTGCATTTACCGGAATGGAAGCATG  1099
      ||  |||||||||||| ||||||| ||||||| ||  || ||| ||||||
seq2  ATGCCTTTAAACTTTGCCGAATTA-CTGCATTAAC--GATTGG-AGCATG  1085

seq1  ACCTAGG  1106
      | |||||
seq2  A-CTAGG  1091