BAC Information

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BAC

Clone NameB6Ng01-347I03
Chromosome16 (Build37)
Map Location 51,044,786 - 51,096,976
singlet/doubletdoublet
Overlap genenone
Upstream geneEG224180, EG667802, LOC100043404, Bbx, LOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
Downstream geneLOC627543, Cblb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347I03.bB6Ng01-347I03.g
ACCGA129091GA129092
length1,2161,150
definitionB6Ng01-347I03.b B6Ng01-347I03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,095,732 - 51,096,976)(51,044,786 - 51,045,922)
sequence
gaattctgactaccttgagttgtcagtctcatgatgccaagctaaaagcc
agatcacctttccttgaatgtggtcagaaagaaatgtggtgatgtaacag
caactggtgacactttggcttcaaacatgaagagaactaccagccaatgt
gtgctgacatagggaggaaacattcctgctgctccagaaaacaccaaatg
gttaagacggtgcactttcatcctaaatgacattcatgtcagacttgtaa
ccctctaaatcaaaaccagcacatttgcatagtttgggaaggtcaattta
tggtaatttgtaaaagaggcaacatattgctatcataattccttataaag
ttgcatataaattcttgcatttgagtaaaaaagtacttctttgggggaag
taaaaaaaaagataaaatgaaaaattatgacaagtgaaagcaagattgcc
ctgttttcccattttggaagtgacatttcccagtgggatgaggaaccttg
ggtagccataactgatgaatacttttaaaatctgcatcagaaccctatgg
taaattcaaggtaaagttcaatgcctagagccagacaaagacattttaat
caaatgtccttctcagaggactacagattcatcaattttgcatgcaagca
atttcaaagtataggttggatttgaaggggtgacttttgaagggagacag
tcctaaagcaaactaatatgttacctaataaaatacacactattgatcat
gataagaatcgaaagtattagttgaatgttcctctgagatgttgcaataa
cttctagtctactacactagtcacaatatctgtccaaggtggaaaaggta
aacttcaatattgccatttagaaactatggacccaaaatgtctagactac
cattcatcacattttaacactgatgtacactgaagatgaacatccataat
gaacacaattcctcacatgaagcaagaacactcttattagtcagagtaca
acccatacatttgatatcagtaagtaaatcctgaacaatccagtgacatg
agtttacataatcctcactttggaaacactttggaaaagaatgtcgaaag
aacaaagactgttttttaaaatgatagcacatgttgttgagatgtgagca
ggcaactcatcttgcttcgggaatacaacttataaaaccatggatcatga
cgtttctcaaaaaaaa

gaattcctatttagccttttattctctgtgacttaatcaaatacagcaca
ctgaaatccagcaggaactgacctacttttttagattgccctcctcttta
ggattgagaattcttacatcctagatatattcacatcttcgatttttgtg
cgtcatttgtcttatcagggacaaaagacacagtttgcttctctgctcta
tgacagaagccaagaatctcccgggtcagacacaaaggacagcaatagcc
tgcggtatcagttttgctcggaagatgtgaacagatctgtctacatcaga
gaagacactgatgacaaactaaagacagcattccacccaacaacagatca
gagaaacaatttctccataacattttcttggggtggcgtggggtggggtg
gtgtcaccaagtccattaccccaggagtttgggtgaatagttgcaaacat
gagtgattcaaagtctacagtctcacaggaaagcccctctcctaacaaat
aatgactcacacatgctgaatcctatatgttcagtggccaacttgcaggt
agctccaccggaaagtgttttctccctagccattgttcacagctttcata
aacacaggaaagagccctgaagatcttctagctttctgagcttcataaat
gccctgggtctcaatagctccttaagtcttaggtgcctccctccaccagg
ggatgcttccatttggagcaaatagctactagatatagccaatagtcaga
gtactctaattttctggtgactatggttcagaccaaaacacccagaaaac
caacacctgccttggtgcataaaagggctttgtgtgactcaactttctga
cgccactttttgtgcttttctcaggaatttgccctgagagaacaaagtga
ccaaaacatctgttgtgttgatcatccctgtgatgtctgtgtagaaccat
cctcaatcacgagagactttatttaccttgtgcttcgtttgggataattt
gctagttgttttcttgagagcatattggtttttggcaagtaacttcattt
tagctgcaattatgggtgattccacctttgcccaatcaagaactccctgg
aactcttaagtttttggtttattcctatctctataagaatgtagggctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_51095732_51096976
seq2: B6Ng01-347I03.b_49_1264 (reverse)

seq1  TTTTTTTTGAGAAAACACTCAATTGATTTCCAAAGTGGTTTTATAAGTTT  50
      ||||||||||||||    |||  |||  ||||   |||||||||||| ||
seq2  TTTTTTTTGAGAAA--CGTCA--TGA--TCCA---TGGTTTTATAAG-TT  40

seq1  GTATTCCCAGAAGCAAAGGATGAGTGTGCCCCTTGCTCCACATCCTCAAC  100
      |||||||| |||||||  ||||||| ||||   |||| ||||| ||||||
seq2  GTATTCCC-GAAGCAA--GATGAGT-TGCC---TGCT-CACAT-CTCAAC  81

seq1  AACATGTGCTATCATTTTTTAAAAAACAGTCTTTGTCTTTTCAACCTTTC  150
      ||||||||||||||  ||||||||||||||||||||  |||| | | |||
seq2  AACATGTGCTATCA--TTTTAAAAAACAGTCTTTGTTCTTTCGA-CATTC  128

seq1  TTATCCAAAGTGGTTTCCAAAGTGAGATTTATGTAAACTCATGTCACTGG  200
      || |||||||| ||||||||||||||  ||||||||||||||||||||||
seq2  TTTTCCAAAGT-GTTTCCAAAGTGAGGATTATGTAAACTCATGTCACTGG  177

seq1  ATTGTTCAGGATTTACCTTACTGATTAATCAAATGTATGGGTTGTACTCT  250
      ||||||||||||||| |||||||||  |||||||||||||||||||||| 
seq2  ATTGTTCAGGATTTA-CTTACTGAT--ATCAAATGTATGGGTTGTACTC-  223

seq1  TGACTAATAAGAGGTGTTCTTGCTTCATGTGAGGAATTGTGTTCATTATT  300
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  TGACTAATAAGA-GTGTTCTTGCTTCATGTGAGGAATTGTGTTCATTA-T  271

seq1  GGATGTTCATCTTCAGTGTACATCAGTGTTAAAATGTGATGAATGGTAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTTCATCTTCAGTGTACATCAGTGTTAAAATGTGATGAATGGTAGT  321

seq1  CTAGACATTTTGGGTCCATAGTTTCTAAATGGCAATATTGAAGTTTACCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACATTTTGGGTCCATAGTTTCTAAATGGCAATATTGAAGTTTACCT  371

seq1  TTTCCACCTTGGACAGATATTGTGACTAGTGTAGTAGACTAGAAGTTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACCTTGGACAGATATTGTGACTAGTGTAGTAGACTAGAAGTTATT  421

seq1  GCAACATCTCAGAGGAACATTCAACTAATACTTTCGATTCTTATCATGAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCTCAGAGGAACATTCAACTAATACTTTCGATTCTTATCATGAT  471

seq1  CAATAGTGTGTATTTTATTAGGTAACATATTAGTTTGCTTTAGGACTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGTGTGTATTTTATTAGGTAACATATTAGTTTGCTTTAGGACTGTC  521

seq1  TCCCTTCAAAAGTCACCCCTTCAAATCCAACCTATACTTTGAAATTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCAAAAGTCACCCCTTCAAATCCAACCTATACTTTGAAATTGCTT  571

seq1  GCATGCAAAATTGATGAATCTGTAGTCCTCTGAGAAGGACATTTGATTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCAAAATTGATGAATCTGTAGTCCTCTGAGAAGGACATTTGATTAA  621

seq1  AATGTCTTTGTCTGGCTCTAGGCATTGAACTTTACCTTGAATTTACCATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCTTTGTCTGGCTCTAGGCATTGAACTTTACCTTGAATTTACCATA  671

seq1  GGGTTCTGATGCAGATTTTAAAAGTATTCATCAGTTATGGCTACCCAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTGATGCAGATTTTAAAAGTATTCATCAGTTATGGCTACCCAAGG  721

seq1  TTCCTCATCCCACTGGGAAATGTCACTTCCAAAATGGGAAAACAGGGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATCCCACTGGGAAATGTCACTTCCAAAATGGGAAAACAGGGCAA  771

seq1  TCTTGCTTTCACTTGTCATAATTTTTCATTTTATCTTTTTTTTTACTTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTCACTTGTCATAATTTTTCATTTTATCTTTTTTTTTACTTCC  821

seq1  CCCAAAGAAGTACTTTTTTACTCAAATGCAAGAATTTATATGCAACTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGAAGTACTTTTTTACTCAAATGCAAGAATTTATATGCAACTTTA  871

seq1  TAAGGAATTATGATAGCAATATGTTGCCTCTTTTACAAATTACCATAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAATTATGATAGCAATATGTTGCCTCTTTTACAAATTACCATAAAT  921

seq1  TGACCTTCCCAAACTATGCAAATGTGCTGGTTTTGATTTAGAGGGTTACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCCCAAACTATGCAAATGTGCTGGTTTTGATTTAGAGGGTTACA  971

seq1  AGTCTGACATGAATGTCATTTAGGATGAAAGTGCACCGTCTTAACCATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGACATGAATGTCATTTAGGATGAAAGTGCACCGTCTTAACCATTT  1021

seq1  GGTGTTTTCTGGAGCAGCAGGAATGTTTCCTCCCTATGTCAGCACACATT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTCTGGAGCAGCAGGAATGTTTCCTCCCTATGTCAGCACACATT  1071

seq1  GGCTGGTAGTTCTCTTCATGTTTGAAGCCAAAGTGTCACCAGTTGCTGTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTAGTTCTCTTCATGTTTGAAGCCAAAGTGTCACCAGTTGCTGTT  1121

seq1  ACATCACCACATTTCTTTCTGACCACATTCAAGGAAAGGTGATCTGGCTT  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACCACATTTCTTTCTGACCACATTCAAGGAAAGGTGATCTGGCTT  1171

seq1  TTAGCTTGGCATCATGAGACTGACAACTCAAGGTAGTCAGAATTC  1245
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTGGCATCATGAGACTGACAACTCAAGGTAGTCAGAATTC  1216


seq1: chr16_51044786_51045922
seq2: B6Ng01-347I03.g_67_1216

seq1  GAATTCCTATTTAGCCTTTTATTCTCTGTGACTTAATCAAATACAGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATTTAGCCTTTTATTCTCTGTGACTTAATCAAATACAGCACA  50

seq1  CTGAAATCCAGCAGGAACTGACCTACTTTTTTAGATTGCCCTCCTCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATCCAGCAGGAACTGACCTACTTTTTTAGATTGCCCTCCTCTTTA  100

seq1  GGATTGAGAATTCTTACATCCTAGATATATTCACATCTTCGATTTTTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGAGAATTCTTACATCCTAGATATATTCACATCTTCGATTTTTGTG  150

seq1  CGTCATTTGTCTTATCAGGGACAAAAGACACAGTTTGCTTCTCTGCTCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCATTTGTCTTATCAGGGACAAAAGACACAGTTTGCTTCTCTGCTCTA  200

seq1  TGACAGAAGCCAAGAATCTCCCGGGTCAGACACAAAGGACAGCAATAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAAGCCAAGAATCTCCCGGGTCAGACACAAAGGACAGCAATAGCC  250

seq1  TGCGGTATCAGTTTTGCTCGGAAGATGTGAACAGATCTGTCTACATCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGGTATCAGTTTTGCTCGGAAGATGTGAACAGATCTGTCTACATCAGA  300

seq1  GAAGACACTGATGACAAACTAAAGACAGCATTCCACCCAACAACAGATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACTGATGACAAACTAAAGACAGCATTCCACCCAACAACAGATCA  350

seq1  GAGAAACAATTTCTCCATAACATTTTCTTGGGGTGGCGTGGGGTGGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACAATTTCTCCATAACATTTTCTTGGGGTGGCGTGGGGTGGGGTG  400

seq1  GTGTCACCAAGTCCATTACCCCAGGAGTTTGGGTGAATAGTTGCAAACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACCAAGTCCATTACCCCAGGAGTTTGGGTGAATAGTTGCAAACAT  450

seq1  GAGTGATTCAAAGTCTACAGTCTCACAGGAAAGCCCCTCTCCTAACAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATTCAAAGTCTACAGTCTCACAGGAAAGCCCCTCTCCTAACAAAT  500

seq1  AATGACTCACACATGCTGAATCCTATATGTTCAGTGGCCAACTTGCAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTCACACATGCTGAATCCTATATGTTCAGTGGCCAACTTGCAGGT  550

seq1  AGCTCCACCGGAAAGTGTTTTCTCCCTAGCCATTGTTCACAGCTTTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCACCGGAAAGTGTTTTCTCCCTAGCCATTGTTCACAGCTTTCATA  600

seq1  AACACAGGAAAGAGCCCTGAAGATCTTCTAGCTTTCTGAGCTTCATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGGAAAGAGCCCTGAAGATCTTCTAGCTTTCTGAGCTTCATAAAT  650

seq1  GCCCTGGGTCTCAATAGCTCCTTAAGTCTTAGGTGCCTCCCTCCACCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGGTCTCAATAGCTCCTTAAGTCTTAGGTGCCTCCCTCCACCAGG  700

seq1  GGATGCTTCCATTTGGAGCAAATAGCTACTAGATATAGCCAATAGTCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCTTCCATTTGGAGCAAATAGCTACTAGATATAGCCAATAGTCAGA  750

seq1  GTACTCTAATTTTCTGGTGACTATGGTTCAGACCAAAACACCCAGAAAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTAATTTTCTGGTGACTATGGTTCAGACCAAAACACCCAGAAAAC  800

seq1  CAACACCTGCCTTGGTGCAT-AAAGGGC-TTGTGTGACTC-ACTTTCTGA  847
      |||||||||||||||||||| ||||||| ||||||||||| |||||||||
seq2  CAACACCTGCCTTGGTGCATAAAAGGGCTTTGTGTGACTCAACTTTCTGA  850

seq1  CGCCAC-TTTTGTGCTTTTCTCAGGAA-TTGCCCTGAGAGAAC-AAGTGA  894
      |||||| |||||||||||||||||||| ||||||||||||||| ||||||
seq2  CGCCACTTTTTGTGCTTTTCTCAGGAATTTGCCCTGAGAGAACAAAGTGA  900

seq1  CCAAAACATCTG-TGTG-TGATCATCCCTGTGATGTCTGTGTAGAACCAT  942
      |||||||||||| |||| ||||||||||||||||||||||||||||||||
seq2  CCAAAACATCTGTTGTGTTGATCATCCCTGTGATGTCTGTGTAGAACCAT  950

seq1  CCTCAAATCACGAGAGACTTTATTTACCTTGTGCTTCGTTT-GGATTATT  991
      |||| |||||||||||||||||||||||||||||||||||| |||| |||
seq2  CCTC-AATCACGAGAGACTTTATTTACCTTGTGCTTCGTTTGGGATAATT  999

seq1  TGCTAGTTG-TTTCTTGAGAGCATTATTGGTTTTT-GCAAGTAACTTCAT  1039
      ||||||||| ||||||||||||| ||||||||||| ||||||||||||||
seq2  TGCTAGTTGTTTTCTTGAGAGCA-TATTGGTTTTTGGCAAGTAACTTCAT  1048

seq1  TTTAGCTGCATTTAT-GGTGA-TCCA-CTTTGCCCCATCTAGAACTACAC  1086
      |||||||||| |||| ||||| |||| |||||||| ||| |||||| |  
seq2  TTTAGCTGCAATTATGGGTGATTCCACCTTTGCCCAATCAAGAACTCCCT  1098

seq1  TGAAC-CTTTAGTTTTTGTTTTATTTCTATCTCCTATAAGAATGTA-GGC  1134
       |||| ||| |||||||| |||||| |||||| ||||||||||||| |||
seq2  GGAACTCTTAAGTTTTTGGTTTATTCCTATCT-CTATAAGAATGTAGGGC  1147

seq1  TGA  1137
      |||
seq2  TGA  1150


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