Query= MSMg01no048_n03.b1 MSMg01no048_n03.b1 CHROMAT_FILE:
MSMg01no048_n03.b1 PHD_FILE: MSMg01no048_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:10 2005
(239 letters)
>mm_chr16_73912530_73913168
Length = 639
Score = 348 bits (180), Expect = e-100
Identities = 222/246 (90%), Gaps = 20/246 (8%)
Strand = Plus / Minus
Query: 1 ataaagtgactgtaatccttgctctgacctttaa-----taatatttatatctggactta 55
||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 301 ataaagtgactgtaatccttgctctga-----aaatgactaatatttatatctggactta 247
Query: 56 tatttaatatgaaaatatgatggctgccttgttagttagcattagcctttctctctctgt 115
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 246 tatttaatatgaaaatatgatggctgctttgttagttagcattagcctttctctctctgt 187
Query: 116 ctctgtctctgactctctctctctgtgtctctgtctgtctg-c---ctttctctctctat 171
||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |
Sbjct: 186 ctctgtctctgactctctctctctgtgtctctgtctgtctgtctatctttctctctctct 127
Query: 172 atatatatatatgtatatatatatatatatagagagagagattttatgtggaatatatat 231
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 126 ctatatatatat------atatatatatagagagagagagattttatgtggaatatatat 73
Query: 232 atattc 237
||||||
Sbjct: 72 atattc 67
Score = 54.9 bits (28), Expect = 4e-12
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 185 tatatatatatatatatagagagagaga 212
||||||||||||||||||||||||||||
Sbjct: 108 tatatatatatatatatagagagagaga 135
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 92
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 2
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space: 144900
Effective search space used: 144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no048_n03.g1 MSMg01no048_n03.g1 CHROMAT_FILE:
MSMg01no048_n03.g1 PHD_FILE: MSMg01no048_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:11 2005
(709 letters)
>mm_chr16_73824475_73825583
Length = 1109
Score = 1270 bits (657), Expect = 0.0
Identities = 696/709 (98%)
Strand = Plus / Plus
Query: 1 ttatttaattatttctcttagtctcctcagtctcctatgagtttcctccctttaaaaatt 60
||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 201 ttatttaattatttctcttagtctcctcagtctaagatgagtttcctctttttaaaaatt 260
Query: 61 gctatatatctgtagacattatgggttgttccaactggtgaatgtaagtggtatatgttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctatatatctgtagacattatgggttgttccaactggtgaatgtaagtggtatatgttg 320
Query: 121 gataatggctggagagccatcaaaaatcgtatagtccaaagacagtgtcatacagaaaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gataatggctggagagccatcaaaaatcgtatagtccaaagacagtgtcatacagaaaag 380
Query: 181 aatgatttgagtgcaagtattgtgtgttaagaacctgagatcttaggatatgcacataac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgatttgagtgcaagtattgtgtgttaagaacctgagatcttaggatatgcacataac 440
Query: 241 tgtgaaaggcaggcagcaaggctaagaaaatacctgtttcccaggataagaacatgaagc 300
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 441 tgtgaaaggcaggcagcaaggctaagaaaatacttgtttcccaggataagaacatgaagc 500
Query: 301 tgacatgttgaaaaggtattcctaatcaaatagggaacttggaaatataaagacatttca 360
||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 501 tgacatgttgaaaaggtattcctaaacaaatagagaacttggaaatataaagacatttca 560
Query: 361 agaatgaatttgaatatcttcctatcaagtttaagctttctttgcataatgagttaatgg 420
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 agaatgaatttgagtatcttcctatcaagtttaaactttctttgcataatgagttaatgg 620
Query: 421 gtataataatagtaattattctgtagttgcgtggccatttttttctgcagtgccggtgaa 480
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 621 gtataataatagtaattattctgtagttgcgtggccatttttttctggagtggcggtgaa 680
Query: 481 acaccactctcctttgctatctctgtgatacgctgcatcttctcactctgtagaagctaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 acaccactctcctttgctatctctgtgatacgctgcatcttctcactctgtagaagctaa 740
Query: 541 atggaaatatccctttctcctcttgtactaatggtgccccgcagcaccaatagcaatatc 600
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 atggaaatatccctttctcctcttgtactaatggtgccctgcagcaccaatagcaatatc 800
Query: 601 ctagacaatacattcctgctaaaatacagttattgtacttgcaggaaagccttccttcct 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ctagacaatacattcctgctaaaatacagttattgtacttgcaggaaagccttccttcct 860
Query: 661 gaccttccccatgcatctttcaaatcgggtactcgagactcacattaag 709
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gaccttccccatgcatctttcaaatcgggtactcgagactcacattaag 909
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space: 768201
Effective search space used: 768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
