Query= MSMg01no048_n13.b1 MSMg01no048_n13.b1 CHROMAT_FILE:
MSMg01no048_n13.b1 PHD_FILE: MSMg01no048_n13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:14 2005
(693 letters)
>mm_chr16_67349921_67351014
Length = 1094
Score = 1274 bits (659), Expect = 0.0
Identities = 686/695 (98%), Gaps = 3/695 (0%)
Strand = Plus / Plus
Query: 1 aaaaataaaaacaaaacaaaacaacaacaaccaatagacaacataatacggagagacaat 60
||||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct: 201 aaaaataaaaacaaaacaaaacaacaacaacaaaaagacaacataatatggagagacaat 260
Query: 61 gatttaactgaatattaggaaagggttctgaaaataaagtctgaagtaggcagagcctcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatttaactgaatattaggaaagggttctgaaaataaagtctgaagtaggcagagcctcg 320
Query: 121 gacatataagtggcatcctaaagatgacattaccagttttaacatatcattgagtgttct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gacatataagtggcatcctaaagatgacattaccagttttaacatatcattgagtgttct 380
Query: 181 aacaaaagtgtcataatcaaattataagatactcagttattgtcaatagcatatgttatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacaaaagtgtcataatcaaattataagatactcagttattgtcaatagcatatgttatt 440
Query: 241 gtagaggtagtaagagctcagtgagagttttatcaaattatacacttagattgacataat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagaggtagtaagagctcagtgagagttttatcaaattatacacttagattgacataat 500
Query: 301 tatgatatctcgttctggatagcatgttggcttcttccttttcttcattccaagtttata 360
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 501 tatgatatctcgttctggatagcatgttggtttcttccttttcttcattccaagtttata 560
Query: 361 cctctggaaacattggaatgctgatgttattagtttaatcatatgtgtaaggtagagcaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctctggaaacattggaatgctgatgttattagtttaatcatatgtgtaaggtagagcaa 620
Query: 421 aaaaaaaaaaaa-ggaaacagcaagcatttgggacatagagagttctgcagaagagttat 479
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaaaaaaaaaaaggaaacagcaagcatttgggacatagagagttctgcagaagagttat 680
Query: 480 agaaaaactagaatcacatcaactcgatacagatgaaaggcataatagagaagatgccac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agaaaaactagaatcacatcaactcgatacagatgaaaggcataatagagaagatgccac 740
Query: 540 tggaggaagcgacagacaataaaagataaagcaaagcgaagagccgagaaatggatccat 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 741 tggaggaagcgacagacaataaaagataaagcaaagcgaggagccgagaaatggatccat 800
Query: 600 tctgccagct-aaagtcttaaaatcaagaatagtgaaaagggaacatggaaagacaatta 658
||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tctgcca-cttaaagtcttagaatcaagaatagtgaaaagggaacatggaaagacaatta 859
Query: 659 gatgtaaaggcaagattggggagaatatatccatc 693
|||||||||||||||||||||||||||||||||||
Sbjct: 860 gatgtaaaggcaagattggggagaatatatccatc 894
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1094
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1084
Effective search space: 740372
Effective search space used: 740372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no048_n13.g1 MSMg01no048_n13.g1 CHROMAT_FILE:
MSMg01no048_n13.g1 PHD_FILE: MSMg01no048_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:14 2005
(706 letters)
>mm_chr16_67442245_67443350
Length = 1106
Score = 899 bits (465), Expect = 0.0
Identities = 515/538 (95%), Gaps = 11/538 (2%)
Strand = Plus / Minus
Query: 179 aaggaaagaagagaagagaaaagaaaagaagagaagagaagagaagagaagagaagagaa 238
|||||||||| ||||||||||||||||||| |||| |||||||||||||| |||| ||||
Sbjct: 1102 aaggaaagaaaagaagagaaaagaaaagaaaagaaaagaagagaagagaaaagaaaagaa 1043
Query: 239 aagaaaagaag----------agaaaagaaaagaaaagaaaaagtaggacagcaaaaaaa 288
||||||||||| |||||||||||||||||||||| |||||||| ||||||
Sbjct: 1042 aagaaaagaagagaagagaaaagaaaagaaaagaaaagaaaaaacaggacagc-aaaaaa 984
Query: 289 attcaataataaaagaacttctgggggaatcaccatttctgaactcaagctgtactacag 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 983 tttcaataataaaagaacttctgggggaatcaccatttctgaactcaagctgtactacag 924
Query: 349 agcaatactgataaaaagaatatacatctctattcatgacacttggtctatgaagaagca 408
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 923 agtaatactgataaaaagaatatacatctctattcatgacacttggtctatgaagaagca 864
Query: 409 gcagctagggagcataaagaaagtaaaaaatcacaccagtatattattagagtacacaat 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 gcagctagggagcataaagaaagtaaaaaatcacaccagtatattattagagtacacaat 804
Query: 469 tttatcaagtcaaattagcattgtaaacaaaactattcacattttatcaaactagtgatt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tttatcaagtcaaattagcattgtaaacaaaactattcacattttatcaaactagtgatt 744
Query: 529 ncttttttatgtcaccaccttttgctacttgtatgaaatctttgcacttgcagtggttgg 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tattttttatgtcaccaccttttgctacttgtatgaaatctttgcacttgcagtggttgg 684
Query: 589 catgacattaaatataatgttttacatgtagtttagataaaacatatacaaatatactta 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 catgacattaaatataatgttttacatgtagtttagataaaacatatacaaatatactta 624
Query: 649 aactagtttattttaaatagttaaatatttttctcaagttttatcattttcatatctt 706
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 623 aactagtttattttaaatagttaaatatttttctcaagttttatcattttcgtatctt 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 69
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space: 762816
Effective search space used: 762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
