BAC Information

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BAC

Clone NameMSMg01-049C02
Chromosome16 (Build37)
Map Location 74,758,814 - 74,759,270
singlet/doubletsinglet
Overlap genenone
Upstream geneRobo2
Downstream geneLOC665042, D930038D03Rik, Rbm11, Stch
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049C02.T7 (MSMg01no049_c02.b1)MSMg01-049C02.TJ (MSMg01no049_c02.g1)
ACCAG278696AG278697
length1,3051,251
length of high quality
(start - end)		467 (36 - 502)721 (71 - 791)
definitionCHROMAT_FILE: MSMg01no049_c02.b1 PHD_FILE: MSMg01no049_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:49 2005CHROMAT_FILE: MSMg01no049_c02.g1 PHD_FILE: MSMg01no049_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:10:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNTTACATTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CTTCATTTAAAAGCAGTTACCTTAACAGAACAAAACAAAAATAACACTCT
TAGTCCACTTGCTGGGGCAGGAGGCATTGAAATACAGATATAGGCTTTGT
TACTTTAAGATACAATATAATTATGTGGTGAAACTCATTTTCTCTTTTTG
TTTTATTCCAATTTATGTTTAGCAAAATTACCAACTCCACATAAGAAAGT
CCTGGTAATTATTTGTTTAGAATTGCTGGGCTGTGTACGAATGTGGGGAC
AGTTATCTTTATTCTTTCTTAGACTTATTATAGATTGAAATTAGGCTGAG
CTTTCTTTGCTGTTATTTTTCCAGAGCCTTTGGGATTAGAGATGATGGAT
TTTGGTGGTGTTCTGAGTGCAGTTAAGCCCTTGTCCACATAAGTATAAAG
TTATTGCTCTGTGTAGCTGGTATATTTTCAAAGGTAATTAACGCTACACA
TTGGAAGGAGCAGCATGATTAGAAGCCCTCCATCTCTAGGAGGCTGCTCT
GTGCTCACACTCCTATAATCTTACACTTCTTACAATTACATTTTTATTTA
AAGCAGATAGTATATAGACAACTTGGTGTTGCTTCTTCCCCACTTCTTGA
ACACTTTCTATACAGTTGCTCATGTTGGATTGACTTGTATCCATAAAATT
ATTTTTTGTTGTCATTTTATATTCTGTTATTCCTGAAAACTCTCTAGTAA
TCTAAAAATACATCTCCTGTTCTTCTATAGTTTTCACCCTCTTTTTTTTC
ATATATTCTATATTTTCCCCCTTCAATAATTTCTTTTCTTTCTTTTTATA
TTCTTCTCTATCTACTTTCATTTCTTTTTTCATTTTTTTCCTTCTTTTAA
ATTATATTCTTATAATTAAATATCAACCTTATAATTATCGTTAATTCTTA
CTTCTCTTAATCATTTTACACCATATCAAATCATTTACTGTCATATCTCA
TATCTACCTCTAATTANTTATATATTTTTTATTTACTAACTTTTATCAAT
TCATTTTCTCTTCTATATCTCATTTATATTCTTCTCTATATCTCTTTATT
TCTATATTACCCCTTTCTATTTATATACCATATCTCTTATAATTATTACT
TTATTACTTTCTATCTTCACTTATCATTTATTATTCTTTATCTTACCATA
ACTTTTATATCATCATTTTATTTTAAATTACTACTCTACTTTTATTCCTA
CTTTCTTACACCTTCTCTATATCTCTCTTTTCTTACTCTTGATACATTTT
CTTAC

TTTTTTTTCCATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCCTTACCTGAGGAATACCGAATGGCAGAG
AAGCACCTGAAACCATGTTCAACATCCTTAATCATCAGGGAAATACAAAT
CAAAACAACCCTGAGATTCCACCTCACACCAGTGAGAATGGCTAAGATCA
AAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACA
CTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATC
AGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAG
CAATACCTCTCCTGGGCATATATCCAGAAGAAGCCCCAACTGGTAAGAAG
GACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAA
CTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGT
GGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTT
ATGAAATTCCTAGCCAAATGGATGGACCTGGAGAGCATCATCCTGAGTGA
GGCAACACAATCACAAAGGAACTCACACAATATGTACTCACTGATAAGTG
GATACTAGCCCAAAACCTAGGATACCCACGATATAAGATACAATTTCCTA
AACACATGGAACTCAAGAAAAATGAAGACTGAAGTGTGGACACTATGCCC
CTCCTTAGAAGTGGGAACAAAACACCCATGGAAGGAGTTACAGAAACAAA
GTATGGAGCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAG
TGATCCACCCCATAATCAGCTTCCAAATGCTGACACCATTGCATACACTA
GCACGATTTCACTGAAAGGACCCAGATGTAGCTGCCTCTTGTGAAACTAT
GCCGGGGCCTTACAAACACAGAAGTGAATGCTCACAGTCAGCTAAGGGAT
GAATACAAGGGTTTCCAATGGAGGAAGCTAAAAAAAGTACCCAAGAGCCT
AAAGGGATTTTCCCCCCTATAGGGGGGAAAAAATTTATTAAATTTACCGT
TACCCCGGAACTTCTGTACTCTGTTGGGATATGTTCTAAAAAAAGGCCCA
ACCGCCCATCCCTGGAAAAAAAAGGCCCCTTGGACACCCCAAATTTTTGG
TCCCCCCGCTACGGGTAAACCCCTGCTTAAAAAGGGGTATATGTTTTTTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_c02.b1 MSMg01no049_c02.b1 CHROMAT_FILE:
MSMg01no049_c02.b1 PHD_FILE: MSMg01no049_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:10:49 2005
         (467 letters)



>mm_chr16_74758604_74759470
          Length = 867

 Score =  814 bits (421), Expect = 0.0
 Identities = 448/457 (98%)
 Strand = Plus / Minus

                                                                       
Query: 11  gaattcttcatttaaaagcagttaccttaacagaacaaaacaaaaataacactcttagtc 70
           |||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||
Sbjct: 667 gaattcttcatttaaaagcagttaacaaaacagaacaaaacaaaaataacactcttagtc 608

                                                                       
Query: 71  cacttgctggggcaggaggcattgaaatacagatataggctttgttactttaagatacaa 130
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 cacttggtggggcaggaggcattgaaatacagatataggctttgttactttaagatacaa 548

                                                                       
Query: 131 tataattatgtggtgaaactcattttctctttttgttttattccaatttatgtttagcaa 190
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 547 tataattatgtggtgaaactcattttctctttttgttttattccaatttatgtttagcga 488

                                                                       
Query: 191 aattaccaactccacataagaaagtcctggtaattatttgtttagaattgctgggctgtg 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aattaccaactccacataagaaagtcctggtaattatttgtttagaattgctgggctgtg 428

                                                                       
Query: 251 tacgaatgtggggacagttatctttattctttcttagacttattatagattgaaattagg 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tacgaatgtggggacagttatctttattctttcttagacttattatagattgaaattagg 368

                                                                       
Query: 311 ctgagctttctttgctgttatttttccagagcctttgggattagagatgatggattttgg 370
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ctgagctttctttactgttatttttccagagcctttgggattagagatgatggattttgg 308

                                                                       
Query: 371 tggtgttctgagtgcagttaagcccttgtccacataagtataaagttattgctctgtgta 430
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 307 tggtgttctgagtgcagttaagcccttgtcaacataagtataaagttattgctctgtgta 248

                                                
Query: 431 gctggtatattttcaaaggtaattaacgctacacatt 467
           | ||||||||||||||||||||||||||||| |||||
Sbjct: 247 gttggtatattttcaaaggtaattaacgctaaacatt 211


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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