BAC Information

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BAC

Clone NameMSMg01-049J19
Chromosome16 (Build37)
Map Location 75,236,390 - 75,426,959
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo2, LOC665042
Downstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik, LOC100039457, Nrip1, LOC100039316
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049J19.T7 (MSMg01no049_j19.b1)MSMg01-049J19.TJ (MSMg01no049_j19.g1)
ACCAG279002AG279003
length1,2541,240
length of high quality
(start - end)		653 (82 - 734)392 (79 - 470)
definitionCHROMAT_FILE: MSMg01no049_j19.b1 PHD_FILE: MSMg01no049_j19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:49 2005CHROMAT_FILE: MSMg01no049_j19.g1 PHD_FILE: MSMg01no049_j19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:11:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,426,460 - 75,426,959)(75,236,390 - 75,236,781)
sequence
NNNNAACATTGGGCGCTAAGACTCACTAAGGGAGAGGATCCGCGGAATTC
AAACTCAATTGATATCCCTTTTAGCTGTCCACCTAGATGGGGCAAATGTA
CCTTACATCATTCTATTGCCCTTCCATGAGATCCATAGCTTCCTATGGCT
CTTTTAGGCCATGTAGTTCTAATTTATCTTCTTCCTCCATCTTCTTTCTG
TCCCCAGTCTGGTCTCTCACCTCACCCTCTCCATCTTTCCCCTCTCTAAA
GCTTTCAGCTCTGACCCCTCCTTGTACAGCCCAATCACAAGTTCTAGCCT
TATCTGACTAAGATTTCACCTGACTGCACCTGAGTATAGGCACTCTTGAG
AACATACAAACAGCAGTCTACAACAATACCACATTTAATAATTCCTGGTA
TTTATTCATTTATTCACTCATTTATGCATTCATTAATCTAGTTTGTTTAA
AGTTTTTCAGATGAGTTCTCATATCCCAGGATATCTTGAGAGGCACTATG
TAGCGAAGGCTGGTATTTCTGCCTCTATCTTTGAGTACCAGGATAACTAC
CTGACATGAGCTCCTTTGGCAAACTCATGACACTTGGTTGTTAGTGGTGC
AAGTTGACATATAATATCTCACTTCACTGAACTTATACTGTCGAGGAGTT
TGTGTACTTTGGAGCTTGTGATGGTATTTGATTTAATTGTCAAAAAAAAG
TGGGTCAGCAAGATGGATCAATATATAAATGGCACCTGACATCTCATCTA
CACCGAATGAGTTCTATTCCCGAATTCACACAATAGAAGAGTACACTGAC
TTTCCTTGAGTTTTTCTCAGCTCTCCACTTGTGTAATATGGCATGCATAC
ATATATTGCCCATATTTACGCGTTCCCCCACTTACTCCCATGCTTAAAAT
AATAGTAATCCTTAATAATATTTATTTCACTTTTATGGTTACGGTAGTTC
CTCCTAATATTGGATTTTGAAACAAACTTTCTCTGGGTAACCTTGGAAGG
TCCTGTTGACCACAATGGGACTGAACTTAAAAATTTGTCTTCCAAGGGGT
TAGGAATAAAGGCCTGTTGCCCCCCCTAACCCTAGTTAGTGGGTTTACCT
TTGAAAAAAAATATTTTAAATAAATTTTTCCCCTTCAAAATTTTGTGTTC
CCCCAAAGACCTTTTTTAAAAACCCTGTGTCTCCCCCTGGGTTTGGACCC
CTTACTAACAAATATTTTTTCCATTTTGGATAACAAATAGCTTCTCTCTC
TTTT

TTTTGTCCATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTCTTAAGCACGCCAGCCAACCAAGAAGGGCCAG
CATGATGCCTCTGCAGGTAAAGGCCCTCTATGGCAAACCTGATGATTGGA
CTCAGTCCTAAGAATTCACATGCTGAAAGAAGAGACTCTTGCTAGTTTTT
CTCTAAGCTCTACAGTTACACAAGGATATGTGTCCCATATACACAAGCAG
AAGGGCACACATAAAATAAAAACACAAACAAAACTATATAAATGCTGGTG
GTAATTATATCGGGGTACCCCCAAATAGAAGATCCAAATAATCCACCTGG
GTATATACTTAAATGAATCTAAATCAGAACACCATGAGGATACATAACCA
TCAATGTTTACTGCTGGATTATTCACAGTAGCCAGTGTTCGGAACTAGCC
TTGATTTCTTCCAATAGACAGATTAAACACTGTGATATCGTTTATACACA
AAAGTATTTTGCTTGGGCATAAAGAATAACTGTAACTACATGATTTGTAA
GAAAGGGGATAGGATTGCCAATCATACATTGAGAGAAATGAATCAGATCC
TTAAAGACAATTAGCGAATGTATATGACATAGACCTACAAAGATGTTAAG
GCACCAGCTAAAGAGTAGATGAGCAATTACACCATTTATAGGAAAAGGGA
TGGAATTGGAAATCATATGTTGACACAAATAAATCAGATCACACAAGAAC
AATTAGTGCATGTATATATATCACACACACAAACACACTTATCGAAAGAA
ATGGCCTAAGAGTATATACCTGCTTGTGTGTGTGTGTACTAGGAGAGATG
CTAAGAATGAAGAAAGTTTGGGCAAATATCAGTACAGCCCATATCATGGA
CAATCTGTAACAAATCTCCATAATCCTAATTCCTATCAGATTCCTTATTT
TTCCAAGAAATGTGCATAAAGTTGCGGGGTCCTTTCCTTCTTTGACAAAT
GGGACTTTTCTTCCCCAAAAATCCTTTGTCTAGTCGAATAACACGGCAAT
TATTGGCCTCTTCCAACCCTTTATTTAAAAAAACAACATTCTTAACTTTC
CTATACCCCCTTAATGGATGGTAATTTTTTTCTATTTTTTCATTCTTTTT
TTCTCTGAAACTCTAAAAAATGGCTTTAATTTTTTAAAAAATTAAAAGGA
AATTATTCCCCCCTAATTTTTTTTAAAAAACCCCTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_j19.b1 MSMg01no049_j19.b1 CHROMAT_FILE:
MSMg01no049_j19.b1 PHD_FILE: MSMg01no049_j19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:49 2005
         (653 letters)



>mm_chr16_75425907_75426959
          Length = 1053

 Score =  944 bits (488), Expect = 0.0
 Identities = 497/500 (99%)
 Strand = Plus / Minus

                                                                        
Query: 154  ctttcccctctctaaagctttcagctctgacccctccttgtacagcccaatcacaagttc 213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1053 ctttcccctctctaaagctttcagctctgacccctccttgtacagcccaatcacaagttc 994

                                                                        
Query: 214  tagccttatctgactaagatttcacctgactgcacctgagtataggcactcttgagaaca 273
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 993  tagccttatctgactaagatttcacctgactgcacctgagtataggcactcttgagaaca 934

                                                                        
Query: 274  tacaaacagcagtctacaacaataccacatttaataattcctggtatttattcatttatt 333
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933  tacaaacagcagtctacaacaataccacatttaataattcctggtatttattcatttatt 874

                                                                        
Query: 334  cactcatttatgcattcattaatctagtttgtttaaagtttttcagatgagttctcatat 393
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873  cactcatttatgcattcattaatctagtttgtttaaagtttttcagatgagttctcatat 814

                                                                        
Query: 394  cccaggatatcttgagaggcactatgtagcgaaggctggtatttctgcctctatctttga 453
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813  cccaggatatcttgagaggcactatgtagcgaaggctggtatttctgcctctatctttga 754

                                                                        
Query: 454  gtaccaggataactacctgacatgagctcctttggcaaactcatgacacttggttgttag 513
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753  gtaccaggataactacctgacatgagctcctttggcaaactcatgacacttggttgttag 694

                                                                        
Query: 514  tggtgcaagttgacatataatatctcacttcactgaacttatactgtcgaggagtttgtg 573
            ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct: 693  tggtgcaaggtgacatataatatcttacttcactgaacttatactgtagaggagtttgtg 634

                                                                        
Query: 574  tactttggagcttgtgatggtatttgatttaattgtcaaaaaaaagtgggtcagcaagat 633
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633  tactttggagcttgtgatggtatttgatttaattgtcaaaaaaaagtgggtcagcaagat 574

                                
Query: 634  ggatcaatatataaatggca 653
            ||||||||||||||||||||
Sbjct: 573  ggatcaatatataaatggca 554


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no049_j19.g1 MSMg01no049_j19.g1 CHROMAT_FILE:
MSMg01no049_j19.g1 PHD_FILE: MSMg01no049_j19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:11:49 2005
         (392 letters)



>mm_chr16_75236190_75236981
          Length = 792

 Score =  688 bits (356), Expect = 0.0
 Identities = 383/392 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagccaaccaagaagggccagcatgatgcctctgcaggtaaaggccctctatggcaaac 60
           ||||||||||||||||||||||||||||| ||||||||||||||||  ||||| |||| |
Sbjct: 201 ccagccaaccaagaagggccagcatgatggctctgcaggtaaaggcattctatcgcaagc 260

                                                                       
Query: 61  ctgatgattggactcagtcctaagaattcacatgctgaaagaagagactcttgctagttt 120
            ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgatgattgaactcagtcctaagaattcacatgctgaaagaagagactcttgctagttt 320

                                                                       
Query: 121 ttctctaagctctacagttacacaaggatatgtgtcccatatacacaagcagaagggcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctctaagctctacagttacacaaggatatgtgtcccatatacacaagcagaagggcac 380

                                                                       
Query: 181 acataaaataaaaacacaaacaaaactatataaatgctggtggtaattatatcggggtac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acataaaataaaaacacaaacaaaactatataaatgctggtggtaattatatcggggtac 440

                                                                       
Query: 241 ccccaaatagaagatccaaataatccacctgggtatatacttaaatgaatctaaatcaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccccaaatagaagatccaaataatccacctgggtatatacttaaatgaatctaaatcaga 500

                                                                       
Query: 301 acaccatgaggatacataaccatcaatgtttactgctggattattcacagtagccagtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acaccatgaggatacataaccatcaatgtttactgctggattattcacagtagccagtgt 560

                                           
Query: 361 tcggaactagccttgatttcttccaatagaca 392
           | |||||||||||||||||||| |||||||||
Sbjct: 561 ttggaactagccttgatttctttcaatagaca 592


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 392
Length of database: 792
Length adjustment: 9
Effective length of query: 383
Effective length of database: 783
Effective search space:   299889
Effective search space used:   299889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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