BAC Information

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BAC

Clone NameMSMg01-049L18
Chromosome16 (Build37)
Map Location 72,950,326 - 72,986,977
singlet/doubletdoublet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-049L18.T7 (MSMg01no049_l18.b1)MSMg01-049L18.TJ (MSMg01no049_l18.g1)
ACCAG279075AG279076
length1,2361,365
length of high quality
(start - end)
573 (125 - 697)202 (69 - 270)
definitionCHROMAT_FILE: MSMg01no049_l18.b1 PHD_FILE: MSMg01no049_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:03 2005CHROMAT_FILE: MSMg01no049_l18.g1 PHD_FILE: MSMg01no049_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:12:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,950,326 - 72,950,895)(72,986,779 - 72,986,977)
sequence
GGNGGCTCACTGGGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGAATTC
AAGCCTGCTTTTACCTGCATTATGAACTTTACCAGGGGACTGAGTCTTCC
GCACCCTCCCGTGACACCAATGCAAGATTGAACTCTCTGTAGCTGCTGAG
AAAGTTTCCATTGTATGACCAGAGCGCACAGCTTATACTGATGGCTCTTT
ATTATTAAAATTCTACACAGTTTTCACGATCACATACATGATTTTTTGTG
GAGATTGCTTCCATCCAAAGTGGTTTTACTGTCAGTTGTTTAAGGTTATC
ATCAGCCATCCTGTTCCAGGGCTTCCCGGAAATATGCTGCCTAAAGAGAG
GCATCATCATTCATTGGACATTTCTCAACACTTTACATAGCCTACAAAAA
GTGCTGAGACTTGTGAAGGGTAAACAGATAGGCCAACAGCCGAGGGAGGC
GATACAGGTCCACACTCATGAAACCACGGAGTATGAAAAGTGGGCTCATA
CATTCATAGGGAAAGCGTTTTCCCCTGGATTTGAGAGGTGTTGCAGTTTA
TCTCTAACGGGGATTTGTAACGTGGGAACACTTGCCACTTGATAAAAGCT
TGGGGATTAGATGCACTGTGATGTATGTCATATTCAAAAGGTCAGGGCAG
CAGGCAAGTGACGTAAGAAAACACCCAAGTGTCACACAGCTAATGCACCC
TAACCCGGTAACTCTCAATTTGAGAGACTTAAGACTATATTGAAGGACTT
TTAATACTAAAACATACTACTGGATGCATCTTGTTTGTGTTGTTTGCTTT
TAACCAATATGGCTTTACCTGCATATTATATTTACAACAGGTAAGATATT
AATCTCAGTTGATCATTTGGCCAGTTGAATGTTTGGCCATTTGGTTCTCT
ATGCTTATCCCCTCTTTGATTTTCGTTTACTGTTTGTTAATCCCCTCTCA
AAACCTGTTGTCTCTTTCCTGACTAATCGGTTTCATCTCCTATCCTTAAC
TCCAAATCTCTTCTTTTTTTCAATGGCTTTATTTTCATCCAATTTTCTTT
TCTACCTCTTGCATTTCTTCCTGTACTGCTCTATTTGTTTTTTTTTATGT
TCTCCTCTTCTTATTAATTATTTATCTTTACTCTCTCTCCCTTCCTTATA
TATTCTGCTTCTTACTGTTCTACACTCTTCTTTTATTCTCTTAATAATTT
CTACATATATTTTCTTCAGTATTTTTTGTCTTATTC
NNNNAAACATGTGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCTTAACTTGAATATTGCTTTTTGGATTATT
AAATGATACCGACCCTTCACGAGAGAATAGGTAGGAAACATAAGTAGCTT
TCAGTGTGGAATGAGACTGCCTTAGGAATACGGTATTTCTTTCCGAGTGC
AATGTCTAAGTTCCCCTTCATGCTCTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGCTTCCCNTCTTTTTTTCCTTCTCTCTCTCTT
CNTTCCTCTTCTTCTTCCTTTTCCTCCTCTCTTTCCCNTCTTCTTCTCTC
TTTCTTTTTTTCTCTCCTCTTCTTTTTTCTTCTCTCCCCNTTTCCTCTTT
TTTTTTTTTTTTTCTCCTCCCTCCTTTNTTTTTTTCTCTTCTTTTTCTTT
TCTTTTCTCCTCTCCTTTTTTTCTTTATCTTTTTTTTTCTCTCCTCCCTA
CCTTTCTTTTTTCTTCTTTATCTTTCTTCTTCTTTTCCTTTTCTTTCTCT
TTTACAATTATTTCTCTCTTTTCTTCATCTTTCATTTATCTTCTTAATAT
TTCTATTATACTTTATTTTTCCTATTCCTTCAATCTATATTTTTCTTAAC
CTTCCCCTTTTTTTCTTTAATTCTTTCCTAATTTATTTCTCTTTTTCATT
TTTTTTTTTATTTTATTTTACACTATTTCTTTTTTTATTTTTTATATCTT
TTTATATTTCTTCCTATTTTTCTCTTTCCATTATTTTTTTTTCTAAACTT
TCCTTTTATCTTTTATCCTTCTTTTTTTTTACTAACTACTATTCCTTTCA
TCATTTTTTTTTATTTATCTTTTTCTTCTTTTTTTTCTTTTTTTCTTTTC
TTCTTTTTCTATATTTCTTCTTTTTATTTTTTTTTTTCCTTCATCTATAC
ATTTTCTCTCTACCTCTCCTTTATTTTTATATTTTACTTCTTTCTCTCTT
TTATTTTTCTTTTCTTTATCCTCTATTTTTTACTATCATATTTTAATTTT
TCTCTTTTCTTTTTCATTTATTCTATATTTATCTATTTATTTAATTCTTC
TCTCTATCCTTTCTACCTAATTTTTCTCTTATCTTTCTATATATATTTCA
ATTACAATATTTTCATTCTAATCTTACCATTATATTATATTTTTTTATTT
CTTAATCTTCTTTTTTATTCTTCAATTCTCTTTTATATTTATACCCCCCC
CTATTATTTTAATTTACACTTCTATCTTACCTTCACTTCTTNTTAATTAT
ATATACTTTACTCTCCTCCTATTTTATTTTATTACTATTCTTTTCTATTT
TTCTTCTCTCTTATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no049_l18.b1 MSMg01no049_l18.b1 CHROMAT_FILE:
MSMg01no049_l18.b1 PHD_FILE: MSMg01no049_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:03 2005
         (573 letters)



>mm_chr16_72950126_72951099
          Length = 974

 Score = 1025 bits (530), Expect = 0.0
 Identities = 560/570 (98%), Gaps = 1/570 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agattgaactctctgtagctgctgagaaagtttccattgtatgaccagagcgcacagctt 60
           ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 201 agattgaactctctgtagctgctgagaaagtttccattgtaagtccagagcgcacagctt 260

                                                                       
Query: 61  atactgatggctctttattattaaaattctacacagttttcacgatcacatacatgattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atactgatggctctttattattaaaattctacacagttttcacgatcacatacatgattt 320

                                                                       
Query: 121 tttgtggagattgcttccatccaaagtggttttactgtcagttgtttaaggttatcatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtggagattgcttccatccaaagtggttttactgtcagttgtttaaggttatcatca 380

                                                                       
Query: 181 gccatcctgttccagggcttcccggaaatatgctgcctaaagagaggcatcatcattcat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccatcctgttccagggcttcccggaaatatgctgcctaaagagaggcatcatcattcat 440

                                                                       
Query: 241 tggacatttctcaacactttacatagcctacaaaaagtgctgagacttgtgaagggtaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 tggacatttctcaacactttacatagcctacaaaaagtgctgagacttgcgaagggtaaa 500

                                                                       
Query: 301 cagataggccaacagccgagggaggcgatacaggtccacactcatgaaaccacggagtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagataggccaacagccgagggaggcgatacaggtccacactcatgaaaccacggagtat 560

                                                                       
Query: 361 gaaaagtgggctcatacattcatagggaaagcgttttcccctggatttgagaggtgttgc 420
           ||||||| |  ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 561 gaaaagtagattcatacattcatagggaaagcattttcccctggatttgagaggtgttgc 620

                                                                       
Query: 421 agtttatctctaacggggatttgtaacgtgggaa-cacttgccacttgataaaagcttgg 479
           |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 621 agttcatctctaacggggatttgtaacgtgggaaacacttgccacttgataaaagcttgg 680

                                                                       
Query: 480 ggattagatgcactgtgatgtatgtcatattcaaaaggtcagggcagcaggcaagtgacg 539
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggattagatgcactgtggtgtatgtcatattcaaaaggtcagggcagcaggcaagtgacg 740

                                         
Query: 540 taagaaaacacccaagtgtcacacagctaa 569
           ||||||||||||||||||||||||||||||
Sbjct: 741 taagaaaacacccaagtgtcacacagctaa 770


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 974
Length adjustment: 10
Effective length of query: 563
Effective length of database: 964
Effective search space:   542732
Effective search space used:   542732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no049_l18.g1 MSMg01no049_l18.g1 CHROMAT_FILE:
MSMg01no049_l18.g1 PHD_FILE: MSMg01no049_l18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:12:03 2005
         (202 letters)



>mm_chr16_72986623_72987223
          Length = 601

 Score =  325 bits (168), Expect = 1e-93
 Identities = 192/200 (96%), Gaps = 1/200 (0%)
 Strand = Plus / Minus

                                                                       
Query: 2   tcttaacttgaatattgctttttggattattaaatgataccgacccttcacgagagaata 61
           |||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||
Sbjct: 355 tcttaacttgaatattgc-ttttggattattaaatgatgctgacccttcacgagagaata 297

                                                                       
Query: 62  ggtaggaaacataagtagctttcagtgtggaatgagactgccttaggaatacggtatttc 121
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 296 agtaggaaacataagtagctttcagtgtggactgagactgccttaggaatacggtatttc 237

                                                                       
Query: 122 tttccgagtgcaatgtctaagttccccttcatgctctgtgtgtgtgtgtgtgtgtgtgtg 181
           | || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 236 tctctgagtgcaatgtctaagttccccttcatgctgtgtgtgtgtgtgtgtgtgtgtgtg 177

                               
Query: 182 tgtgtgtgtgtgtgtgtgtg 201
           ||||||||||||||||||||
Sbjct: 176 tgtgtgtgtgtgtgtgtgtg 157


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 601
Length adjustment: 8
Effective length of query: 194
Effective length of database: 593
Effective search space:   115042
Effective search space used:   115042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)