Query= MSMg01no052_p07.b1 MSMg01no052_p07.b1 CHROMAT_FILE:
MSMg01no052_p07.b1 PHD_FILE: MSMg01no052_p07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:43 2005
(589 letters)
>mm_chr16_38576871_38577859
Length = 989
Score = 990 bits (512), Expect = 0.0
Identities = 542/552 (98%), Gaps = 1/552 (0%)
Strand = Plus / Minus
Query: 6 gaattcactacatactcaggctagtcttaaccccctgatcacactggcttcacctcccaa 65
|||||||||||||| | ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 552 gaattcactacataataaggctagtcttaaacccctgatcacactggcttcacctcccaa 493
Query: 66 gtgttggtacttcaggcatgtgtcaacagatcaagttctatctactttcatctcctgaaa 125
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 492 gtgttggtacttcaggcatgtgtcaacagatcaagttctatctactttgatctcctgaaa 433
Query: 126 caaactcagtgaaaggttccccactgttgaaaagaagcaatcttactaccacagctttgc 185
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 caaactcggtgaaaggttccccactgttgaaaagaagcaatcttactaccacagctttgc 373
Query: 186 agttaagttcacaaaaatccagtgcttcagttagaactcatacacacagatgcttatgtc 245
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
Sbjct: 372 agttaagttcacaaaaatccagtgtttcagttagaactcatacacatagatgcttatgcc 313
Query: 246 tgctctagaggaaaactctggggctggaaagatggcttggcagttaagagcttgcagctc 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tgctctagaggaaaactctggggctggaaagatggcttggcagttaagagcttgcagctc 253
Query: 306 ttccaaaggagcccagtgtggtccccagcatccatgttaggttgctcacagccacttata 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ttccaaaggagcccagtgtggtccccagcatccatgttaggttgctcacagccacttata 193
Query: 366 actccagctccaagagatctgtcccctcttctgactgccatggataccagcacacatgtg 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 actccagctccaagagatctgtcccctcttctgactgccatggataccagcacacatgtg 133
Query: 426 ccatacactcacacaaatacatacacataaataaaaaaataaatcttaataaagggaaaa 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 132 ccatacactcacacaaatacatacacataaataaaaaaataaatcttaataaagggaaaa 73
Query: 486 gct-gggggctggagagatggctcagcaaatggtagtactgactgctcttccagaggacc 544
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 72 gctggggggctggagagacggctcagcaaatggtagtactgactgctcttccagaggacc 13
Query: 545 caggttcaatgc 556
||||||||||||
Sbjct: 12 caggttcaatgc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space: 566841
Effective search space used: 566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no052_p07.g1 MSMg01no052_p07.g1 CHROMAT_FILE:
MSMg01no052_p07.g1 PHD_FILE: MSMg01no052_p07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:53:43 2005
(426 letters)
>mm_chr16_38494522_38495347
Length = 826
Score = 675 bits (349), Expect = 0.0
Identities = 396/427 (92%), Gaps = 27/427 (6%)
Strand = Plus / Plus
Query: 1 tttggaaagaa-atagggacgatttgcacatttgcttgcacatcacacacacacacacac 59
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 tttggaaaggacatagggacgatttgcacatttgcttgcacatcacacacacacacacac 285
Query: 60 acacacacacacacacacacacacacacacacacacacacacactctctctctctctctc 119
|||||||||||||||||| | |||||||||||||||||||||
Sbjct: 286 acacacacacacacacac-c-----------cacacacacacactctctctc-------- 325
Query: 120 tctctcgataccttaggatagggttctaccctgttgctcagtgacaaagaatcactctgt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ------gataccttaggatagggttctaccctgttgctcagtgacaaagaatcactctgt 379
Query: 180 ggcggaggcaggcttcaagcttgcagcaatcctcctgcaccagtttcctgagtgccagac 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ggcggaggcaggcttcaagcttgcagcaatcctcctgcaccagtttcctgagtgccagac 439
Query: 240 ttccatgtgtaagctatggcacttagcagaacactagttgaatcaatgaagacactgagg 299
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 440 ttccaggtgtaagctatggcacttagcagaacactagctgaatcaatgaagacactgagg 499
Query: 300 ttccaagagggaacctgaattatgaaggtgagtcagaatccagattccctggctctacca 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 500 ttccaagagggaacctgaattatgaaggtgagtcagaatccagatttcctggctctacca 559
Query: 360 ctcttaacctgtatctgttagaccccaagctctgagctcatagacaagctaatttaaaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ctcttaacctgtatctgttagaccccaagctctgagctcatagacaagctaatttaaaat 619
Query: 420 gctttta 426
|||||||
Sbjct: 620 gctttta 626
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 21
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 826
Length adjustment: 9
Effective length of query: 417
Effective length of database: 817
Effective search space: 340689
Effective search space used: 340689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
