BAC Information

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BAC

Clone NameMSMg01-053N21
Chromosome16 (Build37)
Map Location 65,513,413 - 65,513,659
singlet/doubletsinglet
Overlap genenone
Upstream gene4930453N24Rik, Zfp654, LOC433036, Cggbp1, LOC668242, LOC100043815, LOC677448, Htr1f, LOC668247, LOC672931
Downstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-053N21.T7 (MSMg01no053_n21.b1)MSMg01-053N21.TJ (MSMg01no053_n21.g1)
ACCAG281962AG281963
length734707
length of high quality
(start - end)
246 (66 - 311)248 (65 - 312)
definitionCHROMAT_FILE: MSMg01no053_n21.b1 PHD_FILE: MSMg01no053_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:54 2005CHROMAT_FILE: MSMg01no053_n21.g1 PHD_FILE: MSMg01no053_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:54:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATTTGCGGCGCTAAACGACTACTATATCCAAAAAATGCGCGGAATTCTG
ATTTATTCCATTAAGAAACTCTTACTCTCTTCAATATTTCACTTATCTTC
TGTAATGAGTGTACAACTAAGTGATGGTTAGGTTTTTTCAACTCAAGTTA
ATTTCATTTATTTACTTTTTGAGAATATCATTTACAAGTATATTGTTTAC
ATTATTCTACTTCTCCTTTTCCTTTCTCCAGTTCATTCCATGACCACTCC
TTCACAAACACATAGCTACTTATTCCTTAATTATAATTATTACAAACACA
CACACACACACACTTTTTTTTATACATACTCACCTTTAAGGATGTGCTAA
CCTATCAGGTAGCTCGTTTCTTGGGATGACTGACTTTTCCCCCTCCCTGT
TATCCTTCTTTATTTTTTCTAGCAGATTTTACTCCTGCCAATCTCTCTTT
CTTGTTGGCACATTTTCCGTTGTCCCCATTCTTCATGCTTTATTTTGGCA
ACCATACATTTTGATTTTTGCTTTCCACCGCCGATTATGTTTTAGCATGT
CTAGCCCCTGTTAAGCCCATATGTTTTTTCCCCTTTTAGTCTCAATTTTT
TCCCAACTACCTCTCCATGACCCTCTCACCACCTACTCATCTTTGTTGTA
TGCCCTTTGTCGTTGCTTTTTGTTCTTTTCACCTTTTATTCCATTCGCCT
CTTTTTTTTCCTTTATTCTTCCTACTTTACCACN
ATGAAGTGGGAGGCCTGGCGGCCGCTGTTTTCTAAATATAGGTGAACTAT
AGAAGTTCCCCGAAATTCTTTGCAATTTCATTTTAGAGAAACACACAGAT
GGCTACGATAGAACCTTCTGGTTCAATTTTGCAGTAATAAAATTTCAGTG
GTAAGTTTAATTCAATTCAGTTCTGGGAATAATTATTGAGTGTCCAGCCT
GTGCCTGGCACTGTGCTACAATATGGGGTTTAAGCAATACACAACTTCCC
ATGGCCTGGGATCTTGCAGATTTTCTGGTGGACACAGAGTTGAAGTGCTG
AGACCTTTCATGATTTTTTTTTATAAAATTAAATGGAAAGCTTTTCAAAG
CAATTCCCATACACACAACTCTTTTAAGGGTTAATTTTTCCCCTAATGAT
GAGAAGATATACTATTGGTGAGCATTTGTAATAATATGCAACATTCTAGA
ATTTTGGAAACAAGTTCATATTTATTTATTTATTTATTGTACAACGGTAA
AAATATACTATTAATAAGACTCAACAAATTGGACTAAATATGATTTAATG
ATGTTCACCTACGAGATCCATTCTAAGTACTTATCTGTTATTGGACAAAT
ACTGAATACTGTTTTACGGCTAATTACTTTCATTTACCACTATGAGATGT
GTTTGCCGTCATATTTGCATTCTCTTTCTCCAGAAATAGAAATGTCTTAT
TATCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no053_n21.b1 MSMg01no053_n21.b1 CHROMAT_FILE:
MSMg01no053_n21.b1 PHD_FILE: MSMg01no053_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:54:54 2005
         (246 letters)



>mm_chr16_65513213_65513859
          Length = 647

 Score =  462 bits (239), Expect = e-135
 Identities = 245/247 (99%), Gaps = 1/247 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaactcttactctcttc-aatatttcacttatcttctgtaatgagtgtacaactaagtga 59
           ||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 447 aaactcttactctcttcaaatatttcacttatcttctgtaatgagtgtacaagtaagtga 388

                                                                       
Query: 60  tggttaggttttttcaactcaagttaatttcatttatttactttttgagaatatcattta 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tggttaggttttttcaactcaagttaatttcatttatttactttttgagaatatcattta 328

                                                                       
Query: 120 caagtatattgtttacattattctacttctccttttcctttctccagttcattccatgac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caagtatattgtttacattattctacttctccttttcctttctccagttcattccatgac 268

                                                                       
Query: 180 cactccttcacaaacacatagctacttattccttaattataattattacaaacacacaca 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 cactccttcacaaacacatagctacttattccttaattataattattacaaacacacaca 208

                  
Query: 240 cacacac 246
           |||||||
Sbjct: 207 cacacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 647
Length adjustment: 9
Effective length of query: 237
Effective length of database: 638
Effective search space:   151206
Effective search space used:   151206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)