BAC Information

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BAC

Clone NameMSMg01-056I10
Chromosome16 (Build37)
Map Location 53,743,295 - 53,743,574
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043430, LOC667895
Downstream geneLOC433027, LOC100043442
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-056I10.T7 (MSMg01no056_i10.b1)MSMg01-056I10.TJ (MSMg01no056_i10.g1)
ACCAG283916AG283917
length733711
length of high quality
(start - end)
281 (62 - 342)113 (326 - 438)
definitionCHROMAT_FILE: MSMg01no056_i10.b1 PHD_FILE: MSMg01no056_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:13 2005CHROMAT_FILE: MSMg01no056_i10.g1 PHD_FILE: MSMg01no056_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 16:58:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGGCCGCTATACGACTCACATCAGAACGAGGATCCGCGGAATTCACTTTT
TCGAAAAAACAGTTGAAAGCACATCTTTACTTAAAAATTCATGATTTATT
AAAGTGTCATTGTAGAAATGACAAGTATATTTATTCCAATCAAAATCAAA
ATAGATCCACCTTCTTAGTCAAAAAGTCCATGTCCACATGACATGCTTCA
CAGTGTGTGAGTTAAGATGAAAACTCCAGATAATAAATGGTGTCAGGTGT
GTGTCAATGCTTAATTATCATTCAAGACTATTTTATTTTAACTGCCAAGA
TATTTTTTTTTTGTGGTTTGATTCAAGTTCTAAGACTGTCTGTGTTATTT
TTCATCCCCACCATACTTTGCATTCCCAGTATCCCGACCTGATAGAGAAG
CATCTGCCTACACTTGCAGATACTACTGCCTAACCATTTATTTCATGACC
TTTTCTCCCTTGTTATCACATACTAGCTTATATATCACACATAGGTACTA
AACCCAGTGTTTGATTACAGGTTATTTGGACTCTCTCAGTCATCTGTGTC
CTACGGGTATAAATCCCCTTCTATACGCTCCTAATACTAGAAACATTTTT
ATTCATTTCGACTGGCACAACAGGAGAATTTGTTGATCATTTATTTCCTA
TTCATAATATTATTCCAATCTAGAGCACTATTTCAATAGTCAGAATTCGT
ACTAGTTCCACATAAGCCCACACTTATAACTAN
TCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTTTCTCCGCGGAATTCATTGTTTTTATTAGCTGAGTAGTA
CTCCATTTTGTGAATGTACTACATTTTCTGTTTCCATTTCTTTGTTGAAA
AACATCTGGATTCTTTTCAACTTCTGGCTATTATAAATAAGGCTGCTAAG
AACATAGTGGGGCACATGTCTTTGGGTATATGCCCAGGAGTGGTATAGGT
GGGTCCACAGGTAGTACTATGGCCAATTTTCTGAGGAACTGCCAAACTGA
TTTCCAGCGTGGTTGTACTTTCTTGCAATCCCACCAGCAATAAAGGAGTG
TTCCTCTTTCTCCACATCCTTGCCAGCATCTGCTGTCACCTGAGTTTTTG
ATCTTAGCCCTTCTTACTGGAGTGACGTGGCATCTCAGGGTTGTTCTGAT
TTGTATTTCCCTAATGACTAATTATGTTGAGCATTTCTTTAGGTGCTTCT
CAGTCATTCTGTATTCCTCATTTGACAATTTTTTGTTTAGCTCTTTACCC
CGCTCCTAATAGGGTTATTGGGTTCTCTGGGGTCTAATGAACCCGTTTTT
ACAAACTCTGATTTCATTTCCCATGATAATGCCCCCACTTGTCACCTTTG
ATTTTACCGTGCCACTCGCCATGACGGTACAAAGTTGAACTTAAGTTCTC
GCTTCTCAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no056_i10.b1 MSMg01no056_i10.b1 CHROMAT_FILE:
MSMg01no056_i10.b1 PHD_FILE: MSMg01no056_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 16:58:13 2005
         (281 letters)



>mm_chr16_53743095_53743775
          Length = 681

 Score =  503 bits (260), Expect = e-147
 Identities = 275/280 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gttgaaagcacatctttacttaaaaattcatgatttattaaagtgtcattgtagaaatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gttgaaagcacatctttacttaaaaattcatgatttattaaagtgtcattgtagaaatga 260

                                                                       
Query: 61  caagtatatttattccaatcaaaatcaaaatagatccaccttcttagtcaaaaagtccat 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagtatatttatcccaatcaaaatcaaaatagatccaccttcttagtcaaaaagtccat 320

                                                                       
Query: 121 gtccacatgacatgcttcacagtgtgtgagttaagatgaaaactccagataataaatggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtccacatgacatgcttcacagtgtgtgagttaagatgaaaactccagataataaatggt 380

                                                                       
Query: 181 gtcaggtgtgtgtcaatgcttaattatcattcaagactattttattttaactgccaagat 240
           | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gccagatgtgtgtcaatgcttaattatcattcaagactattttattttaactgccaagat 440

                                                   
Query: 241 attttttttttgtggtttgattcaagttctaagactgtct 280
           |||||| ||||| |||||||||||||||||||||||||||
Sbjct: 441 atttttcttttggggtttgattcaagttctaagactgtct 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)