BAC Information

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BAC

Clone NameMSMg01-058I11
Chromosome16 (Build37)
Map Location 13,734,443 - 13,734,760
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622509, LOC622553, Ercc4, Gt4-1, Mkl2, Parn, LOC100043196, 3110001I22Rik, Pla2g10
Downstream geneA930007A09Rik, LOC622757, Rrn3, Ntan1, Pdxdc1, Mpv17l, Ifitm7, 2900011O08Rik, 4921513D23Rik, Nde1, Myh11, 0610037P05Rik, Abcc1, Gm1758, Snai2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-058I11.T7 (MSMg01no058_i11.b1)MSMg01-058I11.TJ (MSMg01no058_i11.g1)
ACCAG285423AG285424
length692700
length of high quality
(start - end)
378 (66 - 443)326 (83 - 408)
definitionCHROMAT_FILE: MSMg01no058_i11.b1 PHD_FILE: MSMg01no058_i11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:48 2005CHROMAT_FILE: MSMg01no058_i11.g1 PHD_FILE: MSMg01no058_i11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:00:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATTTGCGGCGCTATACGACTCCTATTTCAAGAGGATCCGCGGAATTCCA
AAAGTTCCCCATAAGACTCATCAAGTTAAAGGTCAATATGAACTGTTATG
GCTTGAGTTAGAGGTGACCACCAGGCAGAAGCTCCTGCGCCTGTATATGA
GCTCACTGTGGTTTTGTGGGTGACACTGAAGAATGCTACTAATAAGCCAA
AGAGTTATGATTATAACACCCATGCTCTGTTATCTCAATGTTCAAAACTT
CCCCCGTTCACCACCTCTCTTACCTCACTCAGGACCAATCAGCTTTTTTT
TTTTTTAAAGATTTATTTATTTGTTATATGTAAGTACACTGTAGCTATCT
TCAGACACACCAGAAGAGGAAGTTAGATCTCATTACGGATGGCTGTGAGC
CACCATGTGGTTGCTGGGATTTGAACTCAGAACCTTTGGAAGAGAAGTCG
GGTGCTCTTACCTGCTGAGCCATCTCACCAGCCCCCCCAATCATCTTTTA
AAGGTCAGTTGATAATACTCTGTCTAGTAAGCTAAAATGTAATACTGCTC
CCCCTTGCCTTTAAATGTTTGAACCTGGTTTTTCCTATAAAAAGTCTGCT
TGTAGGACACATGGGTACCACAATTAACTTATTCTTTTTGTGGTTCTGGT
CTGATCAGCATCTGGGTGTGCAAACAATATACTATTCCTGTG
CCCCCCCCGATGAAGAGGGAGGCCTGGCGGCCGCCTGGTTCAAAAATGGG
GGTGACCTATAGAATGTTCCCCGGAATTCAAAGGCAGCCTTGTCTATAGA
GTGAGTTCCAGGACTACACAAAGAAATACTGTGTTGAAAAACAAACAGGA
AAGATTTCTTTCCAATACCTTATAACTACAACAGACTAAGTGCTTAGCCT
TCACTGGGACCAGCAGTTCTGAGACTGAAGGAATGATAGACACCGACACT
TGCTACCTCTAAAAGCTTCTGCTAAAGAGATACCTAGGTCCCTTTCACCA
CATTTCATTGGTCAAGTGACCCAATTTCCAGCCTGCAAGGTGAAATGATC
AGTGTTATTAATGATAAGGCATACAAGCTACCCAAACACTGGGGGGCAGG
GTGGGGGTTGGTGTCTCTCTCCTCCCTCATCCCCCTTTCCTCTTTCCTTT
CCTCTTCCCTCTTCCCTTCCCCCTTCTTTCTCCCCTCTGTCCTCATGCCC
TTCCCATCTTCCCGATTATCCTTTTTCCCTCTTATTTTTCACCTCATCCT
TTTTCCCTTTTACCCTTTTTCTCCTCCTCCATCCTCCCCTCAACATATCC
ACTAATCACCCACCCTTTTCCCTCTTTCCTCTACCGTTCTCCGTCTGTCC
TCCTTTTCCTTCCCCCCCTCCCCATCTCCTTTCTCTCTTCTTTCCCCCCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no058_i11.g1 MSMg01no058_i11.g1 CHROMAT_FILE:
MSMg01no058_i11.g1 PHD_FILE: MSMg01no058_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:00:48 2005
         (326 letters)



>mm_chr16_13734330_13735055
          Length = 726

 Score =  584 bits (302), Expect = e-171
 Identities = 315/320 (98%), Gaps = 2/320 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   cttgtctatagagtgagttccaggactacacaaagaaatactgtgttgaaaaacaaacag 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cttgtctatagagtgagttccaggactacacaaagaaatactgtgttgaaaaacaaacag 372

                                                                       
Query: 67  gaaagatttctttccaataccttataactacaacagactaagtgcttagccttcactggg 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 gaaagatttctttccaataccttataactacaacagactaagtgcttagccttcactggg 312

                                                                       
Query: 127 accagcagttctgagactgaaggaatgatagacaccgacacttgctacctctaaaagctt 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 accagcagttctgagactgaaggaatgatagacaccgacacttgctacctctaaaagctt 252

                                                                       
Query: 187 ctgctaaagagatacctaggtccctttcaccacatttcattggtcaagtgacccaatttc 246
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 251 ctgctaaagagatacctaggtccctttcaccacatttcattggtcaagtgacccaacttc 192

                                                                       
Query: 247 cagcctgcaaggtgaaatgatcagtgttattaatgataaggcatacaagctacccaaaca 306
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 cagcctgctaggtgaaatgatcagtgttattaatgataaggcatacaagctacccaaaca 132

                               
Query: 307 ctggggggcagggtgggggt 326
           ||||||||  ||| ||||||
Sbjct: 131 ctgggggg--gggggggggt 114


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 326
Length of database: 726
Length adjustment: 9
Effective length of query: 317
Effective length of database: 717
Effective search space:   227289
Effective search space used:   227289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)