Query= MSMg01no059_b20.b1 MSMg01no059_b20.b1 CHROMAT_FILE:
MSMg01no059_b20.b1 PHD_FILE: MSMg01no059_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:32 2005
(528 letters)
>mm_chr16_48049527_48050454
Length = 928
Score = 998 bits (516), Expect = 0.0
Identities = 526/530 (99%), Gaps = 2/530 (0%)
Strand = Plus / Plus
Query: 1 aaatactgggacataatttcatatatcaaaagaccataatgttgttcccagatcaaccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaatactgggacataatttcatatatcaaaagaccataatgttgttcccagatcaaccaa 260
Query: 61 tctaaaaagctagtttctagttaattctcaggcagcattaactggagggcacatgacaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctaaaaagctagtttctagttaattctcaggcagcattaactggagggcacatgacaag 320
Query: 121 ggactaagacctctttcccatggccatgtgagtacaacagaccttctaagcttaccaagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggactaagacctctttcccatggccatgtgagtacaacagaccttctaagcttaccaagc 380
Query: 181 cttcaggtgaatgcaaacatggctgacatcctgactcaacctcataagatgttaagccaa 240
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttcaggtgaatgcaaacatgtctgacatcctgactcaacctcataagatgttaagccaa 440
Query: 241 ctaaatttctctcaaatttctaatccacagcaatgatggagtaataaatgtgtattcttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaaatttctctcaaatttctaatccacagcaatgatggagtaataaatgtgtattcttt 500
Query: 301 gacactgataatttggggagtaattttgtatgtagcaacaaacaggtactactaatagat 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 gacactgataatttggggagtaatttcgtatgtagcaacaaacaggtactactaatagat 560
Query: 361 aagaatgtagcacaactcacaaccagacattccattataaatagcactgagccatggagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaatgtagcacaactcacaaccagacattccattataaatagcactgagccatggagc 620
Query: 421 ctcaaagcaaactcatacatagatctccttgatgatctgtcacctagaacttttagattc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcaaagcaaactcatacatagatctccttgatgatctgtcacctagaacttttagattc 680
Query: 481 tccaacacccatttcccccaaactcatccagaactttgctt--atgtatc 528
||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 681 tccaacacccatttcccccaaactcatccagaactttgctttgatgtatc 730
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 928
Length adjustment: 10
Effective length of query: 518
Effective length of database: 918
Effective search space: 475524
Effective search space used: 475524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_b20.g1 MSMg01no059_b20.g1 CHROMAT_FILE:
MSMg01no059_b20.g1 PHD_FILE: MSMg01no059_b20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:01:32 2005
(602 letters)
>mm_chr16_48180254_48181253
Length = 1000
Score = 1125 bits (582), Expect = 0.0
Identities = 599/606 (98%), Gaps = 6/606 (0%)
Strand = Plus / Minus
Query: 1 agttgctgtgtt--aaaaaactgtacttgtcttttttttgt-aaaatcaaggggctaagg 57
|||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 660 agttgctgtgttaaaaaaaactgtacttgtcttttttttgtaaaaatcaaggggctaagg 601
Query: 58 ttatcaaatgctgatttgtgggataatcaaatggaaccttggtaaatgattgaactgata 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ttatcaaatgctgatttgtgggataatcaaatggaaccttggtaaatgattgaactgata 541
Query: 118 tgtaaataaaagactgggctttgtatataagagatgagctgtctggagatctattatttt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tgtaaataaaagactgggctttgtatataagagatgagctgtctggagatctattatttt 481
Query: 178 tctttttttagaatttgtctaacaggttttctgaccaaagcaaactagatttccaataca 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tctttttttagaatttgtctaacaggttttctgaccaaagcaaactagatttccaataca 421
Query: 238 gctcttttagacttttctctagcaggttttctttctttc-ttttttttttcaatttttta 296
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 420 gctcttttagac--ttctctagcaggttttctttctttctttttttttttcaatttttta 363
Query: 297 ttagatattttcttcatttacatttcaaatgctaacccgaaagtcccgtataccctcccc 356
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 362 ttagatattttcttcatttacatttaaaatgctaacccgaaagtcccgtataccctcccc 303
Query: 357 ctgccctgctcccttccccacccactcccacttcttggccctggtgttcccctgtactgg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctgccctgctcccttccccacccactcccacttcttggccctggtgttcccctgtactgg 243
Query: 417 ggcatataaactttgcaagactaaggggcctctcttcccaataatggccgactaggccat 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 ggcatataaactttgcaagactaaggggcctctcttcccaataatggccgactaggccat 183
Query: 477 cttctgctacatatgcagctagagacacaagctctgggggtactggttagttcatattgt 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 cttctgctacatatgcagctagagacacaagctctgggggtactggttagttcatattgt 123
Query: 537 tgttccatctatagggttgcaaaccccttcagctcctcgggtactttctctagctccttc 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tgttccatctatagggttgcaaaccccttcagctcctcgggtactttctctagctccttc 63
Query: 597 atttag 602
||||||
Sbjct: 62 atttag 57
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 602
Length of database: 1000
Length adjustment: 10
Effective length of query: 592
Effective length of database: 990
Effective search space: 586080
Effective search space used: 586080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
