Query= MSMg01no059_l17.b1 MSMg01no059_l17.b1 CHROMAT_FILE:
MSMg01no059_l17.b1 PHD_FILE: MSMg01no059_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:18 2005
(545 letters)
>mm_chr16_3255853_3256792
Length = 940
Score = 810 bits (419), Expect = 0.0
Identities = 510/545 (93%), Gaps = 13/545 (2%)
Strand = Plus / Minus
Query: 5 ttaaggtattttcatt---tcctagagagcttgcaagctactcaagagtagggtgttttt 61
||||||||||| || ||||||||||||||||||||||||||||| ||||||| |||
Sbjct: 756 ttaaggtattt---ttgcctcctagagagcttgcaagctactcaagagcagggtgtcttt 700
Query: 62 gtcattatgtcttgttgagcagagagaagaaattaaaatttatcaagaa-cacttgttca 120
||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 699 gtcgttatggcttgttgagcagagagaagaaattaaaatttatcaagaagcacttgttca 640
Query: 121 ggaaaacaaacaagagcagattctgccattgtgaatgctataatattcttagtgttaatt 180
||| |||||||||||||||||| |||||| || |||||||||||||||||||||||
Sbjct: 639 gga----aaacaagagcagattctggcattgtaaacactataatattcttagtgttaatt 584
Query: 181 tgcaataatgaacaaagttggctgagctatatgattgtatattgtagtgatttgatacaa 240
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 583 tgcaataatgaacaaagttggctgagctatctgattatatattgtagtgatttgatacaa 524
Query: 241 aagtcctcattttattatatgtagagaattatgcatgactcatttatatggaatagtttt 300
||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 523 aagccctcatttta-aatatgtagagaataatgcatgactcatttatatggaatagtttt 465
Query: 301 ctatcatccacagctgatccagtcagaatgattactctctagtttaataaaattggaaaa 360
| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 464 caatcatccacagctgatccagtcagaatgattactctcttgtttaatcaaattggaaaa 405
Query: 361 acagatggtttccaattttcttcattaataacccatttcaaactattgacacatacttgt 420
|||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||||||
Sbjct: 404 acagatggtttctaattttcttcattcataacccatttcaaactgttgactcatacttgt 345
Query: 421 ggaatgtttttctatcttttgttcaagtcacttctaaaattgccacccatgtttgttaaa 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggaatgtctttctatcttttgttcaagtcacttctaaaattgccacccatgtttgttaaa 285
Query: 481 tttttaatggattttagtgagactagaaaaaaacaaaagtattagcattgttttcaatgt 540
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 284 tgtttaatggattttagtgagactagaaaaaa-caaaagtattagcattgttttcaatgt 226
Query: 541 caagt 545
|||||
Sbjct: 225 caagt 221
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 940
Length adjustment: 10
Effective length of query: 535
Effective length of database: 930
Effective search space: 497550
Effective search space used: 497550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_l17.g1 MSMg01no059_l17.g1 CHROMAT_FILE:
MSMg01no059_l17.g1 PHD_FILE: MSMg01no059_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:18 2005
(531 letters)
>mm_chr14_20117024_20117955
Length = 932
Score = 1013 bits (524), Expect = 0.0
Identities = 530/532 (99%), Gaps = 1/532 (0%)
Strand = Plus / Plus
Query: 1 tctgggagatctatgtggggaatgttagttgctgtgctccctactgagacaaattacagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgggagatctatgtggggaatgttagttgctgtgctccctactgagacaaattacagg 260
Query: 61 attggcagcacttgatcatgtcaactagaaggcttaaattctgccctggaacttcatgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attggcagcacttgatcatgtcaactagaaggcttaaattctgccctggaacttcatgtt 320
Query: 121 ttccctgtcccctcctattctgtccctggaggcagggctctggatttctgaggcaaagag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttccctgtcccctcctattctgtccctggaggcagggctctggatttctgaggcaaagag 380
Query: 181 gataatgtggcccatgcttccaagccattgaggcccagcctggtctacctggagcttcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gataatgtggcccatgcttccaagccattgaggcccagcctggtctacctggagcttcag 440
Query: 241 agtctttaattttttaaaatttcttcaggagctccttggtctctggggccatggctctag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtctttaattttttaaaatttcttcaggagctccttggtctctggggccatggctctag 500
Query: 301 atttttgaggctgagataatgctgtggccatggcattctagcatggccctgtctgactac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 atttttgaggctgagataatgctgtggccatggcattctagcatggccctgtctgactac 560
Query: 361 atctaatcatggccataatgtcaactgacttccttagaggtctgttcttctgtttatgga 420
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 561 atctaatcatggccataatgtcaactgacttccttagaggtctgttctcctgtttatgga 620
Query: 421 gacattgggggtggagggagtactgtaccggacggacatgacttctgggtataccatgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacattgggggtggagggagtactgtaccggacggacatgacttctgggtataccatgtg 680
Query: 481 gcctgtgattttt-cccccatacctgttattgtttttatttttgcaatctgt 531
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gcctgtgattttttcccccatacctgttattgtttttatttttgcaatctgt 732
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 932
Length adjustment: 10
Effective length of query: 521
Effective length of database: 922
Effective search space: 480362
Effective search space used: 480362
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
