Query= MSMg01no059_o10.b1 MSMg01no059_o10.b1 CHROMAT_FILE:
MSMg01no059_o10.b1 PHD_FILE: MSMg01no059_o10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:31 2005
(654 letters)
>mm_chr16_95875467_95876520
Length = 1054
Score = 1011 bits (523), Expect = 0.0
Identities = 549/559 (98%), Gaps = 3/559 (0%)
Strand = Plus / Minus
Query: 96 caaatatctcgccgtcatattcacaactgtctttatttcttaccacataacagcacacgg 155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1049 caaatatctcgccgtcatattcacaactgtctttatttcttaccacataacagcacaagg 990
Query: 156 attttcctgttcatatcccgaaatgtatatttttattcttttattccccaaggcttatgc 215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 989 attttcctgttcatatcccgaaatgtatatttttattcttttattccccaaggcttatgc 930
Query: 216 aaattccaataaatgttgtgagaatctcacccccccacacacacacacaaaattaaatta 275
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 929 aaattccaataaacgttgtgagaatctcaccccc---cacacacacacaaaattaaatta 873
Query: 276 aattaaaaaaaataatttcccgatcttatcaccacaaaagtgtgggaataacctgcttcc 335
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 872 aattaaaaaaaataatttcccgatcttatcaccacaaaagggtgggaataacctgcttcc 813
Query: 336 ctgataatttccgggtaatttctgactaaatttcttcccacactactttgagctgtgaat 395
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 812 ctgataatttccgggtaatttctgactaaatttcttcccagactactttgagctgtgaat 753
Query: 396 atctctcctggggaatcacgcattctgccttctaatttgatctggaggaaggaagcggca 455
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 752 atctctcctggggaatcacgcattctgccttctaatttgatctggaggaaggaagcggta 693
Query: 456 ctgctctgcttcatatacggagcaggcgccgggtactcagggaggagcccggctatgtga 515
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct: 692 ctgctctgcttcatatacggagcaggcgcccggtactcagggaggagcccggttatgtga 633
Query: 516 ggaggtgttttaataagctagctccataattgtgtttcctctccactaaataagaaaagt 575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ggaggtgttttaataagctagctccataattgtgtttcctctccactaaataagaaaagt 573
Query: 576 cccaccctagtgggactccgtccctctaaattattttctggctttaattgtgccatttcc 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cccaccctagtgggactccgtccctctaaattattttctggctttaattgtgccatttcc 513
Query: 636 cacaagcgcctaatttaat 654
|||||||||||||||||||
Sbjct: 512 cacaagcgcctaatttaat 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no059_o10.g1 MSMg01no059_o10.g1 CHROMAT_FILE:
MSMg01no059_o10.g1 PHD_FILE: MSMg01no059_o10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:02:31 2005
(525 letters)
>mm_chr16_95712710_95713634
Length = 925
Score = 928 bits (480), Expect = 0.0
Identities = 513/532 (96%), Gaps = 14/532 (2%)
Strand = Plus / Plus
Query: 1 tttaaagaagaaaaaaaaaacagagcacaggaacatagcaggaatgaacagagattcgga 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tttaaagaagaaaaaaaaaacagagcacagggacatagcaggaatgaacagagattcgga 260
Query: 61 aatgtttgtgcagctctacagctaagagacctcgggacagcccatgtttccaattaccca 120
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgtttgtgcagctctacagctgagagacctcgggacagcccatgtttccaattaccca 320
Query: 121 ctgagactctgtgctcctcgagagacacgcagacagcacccagcatgctaaccagagcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagactctgtgctcctcgagagacacgcagacagcacccagcatgctaaccagagcct 380
Query: 181 ggggagagagcagtacaaagcctgtctttccacaaaaacaactatctgataattcagttc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggggagagagcagtacaaagcctgtctttccacaaaaacaactatctgataattcagttc 440
Query: 241 acctcattttttt-------gaacctagataaataagaattgttattatcaggtgacctc 293
|||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 acctca-------aaaaaaggaacctagataaataagaattgttattatcaagtgacctc 493
Query: 294 gctcttgctcttcacacaaagcctcactgtgctggtgtaagtgttcacactcacctggtt 353
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 494 gctcttgctcttcacacaaagcctcactgtgctggtgtaagtgttcacacttagctggtt 553
Query: 354 gtgctggtgtgtaagtgctcacactcagcattttcctcgtagctctccaggaggtcagaa 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 gtgctggtgtgtaagtgctcacactcagcattttcctcgtagctctccaggaggtcagaa 613
Query: 414 gttgaccaggagatctacaatatgtcagcttcccattattcacaggctcagacggacaag 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 gttgaccaggagatctacaatatgtcagcttcccattattcacaggctcagacggacaag 673
Query: 474 cagtgataatcgggcacagggagtgtttgacatgataaatggcgttgagatt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 cagtgataatcgggcacagggagtgtttgacatgataaatggcgttgagatt 725
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 525
Length of database: 925
Length adjustment: 10
Effective length of query: 515
Effective length of database: 915
Effective search space: 471225
Effective search space used: 471225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
