BAC Information

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BAC

Clone NameMSMg01-062A15
Chromosome16 (Build37)
Map Location 35,929,563 - 35,986,840
singlet/doubletdoublet
Overlap geneDtx3l, Parp9, Kpna1
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217
Downstream geneWdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062A15.T7 (MSMg01no062_a15.b1)MSMg01-062A15.TJ (MSMg01no062_a15.g1)
ACCAG288107AG288108
length1,1731,206
length of high quality
(start - end)		712 (128 - 839)803 (88 - 890)
definitionCHROMAT_FILE: MSMg01no062_a15.b1 PHD_FILE: MSMg01no062_a15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:13 2005CHROMAT_FILE: MSMg01no062_a15.g1 PHD_FILE: MSMg01no062_a15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,929,563 - 35,930,274)(35,986,263 - 35,986,840)
sequence
NCCCGGTACTTTTNNNTNCCAGTGGGCGCTNXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTTAAGAATGTGTATGACCTTTAAAGTATTGTGGCA
CAGGTACGCAACAGTCAGGTGACCCTACAGTCAGAGCTCTATGAGCCTGA
GGCCAGCCTGAGCCACATAAGGAGACTTTGCCTCAAAACAACAACAAAAA
CTGTAGGTACTACTTATATTTGAGCATCTAGTATTCTGGGTTCCAAACAT
TCTCCGGCAATCCAGACAGTGACTAATATCTAGTCACCCAAGTGCCTGGC
TGGCTGACCAGCATCTGTTTTCTAGACAGATTGCTTAAATTCTTAACTTA
TTCTAAGTACTGATGCACATAATGTTATAACTGTCATATTCTACAGAGGC
AGTAGTAGTCATACACTTATGGGCAAACACACCAGAAGAAGGCATTGGAT
CCCATTACAGATGGTTGTGAGCTACCATGTGGTTGTTGGGAATTGAACTC
TGGACCTCTGGAAGAGCAATCAGTGTTCTTAACCACTAAGCCATCTCTCC
AGCCCCTGTGGGCTTTTCAAATTGGGGGATCTGAAAAGGCTTCATGATAT
ATTTCTTTTGGATGCCAGAGGTAGAGGAATTCAGTCAGATTTCCTGGAAT
ATATCTCCCACCATCTTGGGACCCTTTATAACTAAGACTTCTGCTACCAT
ATATTAGTCTTGTGAGTTCAGTATCATTGTGGACTGATGGGAAGAGAGAG
GCGAGGAAGAGGGCGAGGACCTTANAAGGAATCAAAGCCATGCTGGAGAG
ATGACTCAATGGTTAAGAGCAGGGGCTGCTTTTACAGAAGACCTGGGTTC
AATTCCCAACACCTGCATGGCAGCTCACAACTATCTGTAACTTCAGGGCA
TCTGACACCCTTACACAAACATACATGCAGGCAAGCCACGAATGGCCCTT
AAAATAAATAAACCCTAAAAAAGAAAAACAGAAATCCAAGGGGGAAAAAC
GGTTCCCCCAAACTATTTTTTTTAAAAAACTGGGACCCCCCAAATTTATT
CCCCTTGTGGAAGGATATTTCTTGGGGTCCTTAAAACCCCCTTCTTTTGT
GGGCAGAAAAAAAAAAACCGGGGGAAAAACCTTTTTAATGGGGCGGGGTG
AAAAAATTGTGGGTGACACCCCT

NCCCGTTATTTTTTTTACCAAGTGAGGCTGGGGCGCCXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAATGGACAGCTGACAAT
TGCTTGTAATTCCAGCTCCATGGAATCCAACACAACCCCCCCCAGGCCAC
CTCCACAGGCAACCCCACACATGCAGCATACACTCATATGCACATAATTA
TTTTTTAAAAGAGAAAGCCAAGGCTGGGGAGATTTCTCAGTGGGTAAGAG
CTCTTGCTGGCAAAGGATGAAGATATGAGTTTCACTCCCAATATCCAAAT
TAAAAAAATAGGGGTATGGATGTACATGATGTAAACCCAGTATTGGTGAG
CAAAGATATGCAGACCTCTGCTCAACTGCCTGACAGCCAGCTTAGCTGAC
AAGCCACAAGCTTCAGATTCAAGAGGCCCTTTCTCAAAGCAAGCAGGAAA
GATTAATACAGGAAGATGCCCAAAGTCCTTCTCCAACTTCCACATTCACA
GACATGAGCACAGGAACCTAGACAGTCATATGCTTGCAACCCTCATGTAT
ATACCCCACATACACACAAAAAGAGCCTACCACTAGAAACAAAGTTTTTT
ATTTTGTTTTTGGTTTTTTGTGGTTCCCTTTGGTATGTGTCATGTCTAGT
TAAAGATGTGTAACATTTCATGACAACATCCAAAAAGCATATAATACAAG
GACTGGAGAAATAATCCTGCAACAAAGAACTAACCTAGTATGTATAAGAC
CAAGAAATGGATCCCTGGCACCACAAAAATAAAAACAGCATAATTGCCTG
GCAGAGGAGGACACACCTTTAATGCCAAAACTTGAGTTCCAAGACGGCCA
AGTCTACATAAAGAGACCCTAACAAAAAAAAAAAAAAAAAAAGTATAATC
CAAGTGTAGGTAATATCTTTATTCTCTTTACTTGACCATAAGTTTTCTAG
GTCTGAATTTGTAAAACTTTTGGGAAGTTTAACTACGGGCCTTCTGGGAG
CTATACTCCCTGCAGGTTTTGCTTTCTTGTTTTGGGAAACGGTTAAATTT
TATGTTAGTTTCCAAATACAGAATTTTTTGGCCTCTGTTTTGTGTTAGTA
TATAAGAAATTAACATAATTCTCTACAAGGGTTTTTTTAAAAAAGGTTTC
TTCTTATAAACCTGCTTGTTCGGAAACTCTTTTTTGTATTCTAATGCTCT
CTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_a15.b1 MSMg01no062_a15.b1 CHROMAT_FILE:
MSMg01no062_a15.b1 PHD_FILE: MSMg01no062_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:13 2005
         (712 letters)



>mm_chr16_35929363_35930474
          Length = 1112

 Score = 1340 bits (693), Expect = 0.0
 Identities = 707/712 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagtcagagctctatgagcctgaggccagcctgagccacataaggagactttgcctcaaa 60
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagtcagagctctatgagtttgaggccagcctgagccacataaggagactttgcctcaaa 260

                                                                       
Query: 61  acaacaacaaaaactgtaggtactacttatatttgagcatctagtattctgggttccaaa 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 acaacaacaaaaactgtaggtactacttacatttgagcatctagtattctgggttccaaa 320

                                                                       
Query: 121 cattctccggcaatccagacagtgactaatatctagtcacccaagtgcctggctggctga 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 cattctccggcaatccagacagtgactaatatctagtcatccaagtgcctggctggctga 380

                                                                       
Query: 181 ccagcatctgttttctagacagattgcttaaattcttaacttattctaagtactgatgca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccagcatctgttttctagacagattgcttaaattcttaacttattctaagtactgatgca 440

                                                                       
Query: 241 cataatgttataactgtcatattctacagaggcagtagtagtcatacacttatgggcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cataatgttataactgtcatattctacagaggcagtagtagtcatacacttatgggcaaa 500

                                                                       
Query: 301 cacaccagaagaaggcattggatcccattacagatggttgtgagctaccatgtggttgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaccagaagaaggcattggatcccattacagatggttgtgagctaccatgtggttgtt 560

                                                                       
Query: 361 gggaattgaactctggacctctggaagagcaatcagtgttcttaaccactaagccatctc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggaattgaactctggacctctggaagagcaatcagtgttcttaaccactaagccatctc 620

                                                                       
Query: 421 tccagcccctgtgggcttttcaaattgggggatctgaaaaggcttcatgatatatttctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tccagcccctgtgggcttttcaaattgggggatctgaaaaggcttcatgatatatttctt 680

                                                                       
Query: 481 ttggatgccagaggtagaggaattcagtcagatttcctggaatatatctcccaccatctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttggatgccagaggtagaggaattcagtcagatttcctggaatatatctcccaccatctt 740

                                                                       
Query: 541 gggaccctttataactaagacttctgctaccatatattagtcttgtgagttcagtatcat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gggaccctttataactaagacttctgctaccatatattagtcttgtgagttcagtatcat 800

                                                                       
Query: 601 tgtggactgatgggaagagagaggcgaggaagagggcgaggaccttanaaggaatcaaag 660
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 801 tgtggactgatgggaagagagaggcgaggaagagggcgaggaccttaaaaggaatcaaag 860

                                                               
Query: 661 ccatgctggagagatgactcaatggttaagagcaggggctgcttttacagaa 712
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ccatgctggagagatgactcaatggttaagagcaggggctgcttttacagaa 912


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no062_a15.g1 MSMg01no062_a15.g1 CHROMAT_FILE:
MSMg01no062_a15.g1 PHD_FILE: MSMg01no062_a15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:13 2005
         (803 letters)



>mm_chr16_35985638_35986840
          Length = 1203

 Score = 1110 bits (574), Expect = 0.0
 Identities = 577/578 (99%)
 Strand = Plus / Minus

                                                                        
Query: 226  ggtatggatgtacatgatgtaaacccagtattggtgagcaaagatatgcagacctctgct 285
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1203 ggtatggatgtacatgatgtaaacccagtattggtgagcaaagatatgcagacctctgct 1144

                                                                        
Query: 286  caactgcctgacagccagcttagctgacaagccacaagcttcagattcaagaggcccttt 345
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1143 caactgcctgacagccagcttagctgacaagccacaagcttcagattcaagaggcccttt 1084

                                                                        
Query: 346  ctcaaagcaagcaggaaagattaatacaggaagatgcccaaagtccttctccaacttcca 405
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1083 ctcaaagcaagcaggaaagattaatacaggaagatgcccaaagtccttctccaacttcca 1024

                                                                        
Query: 406  cattcacagacatgagcacaggaacctagacagtcatatgcttgcaaccctcatgtatat 465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1023 cattcacagacatgagcacaggaacctagacagtcatatgcttgcaaccctcatgtatat 964

                                                                        
Query: 466  accccacatacacacaaaaagagcctaccactagaaacaaagttttttattttgtttttg 525
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 963  accccacatacacacaaaaagagcctaccactagaaacaaagttttttattttgtttttg 904

                                                                        
Query: 526  gttttttgtggttccctttggtatgtgtcatgtctagttaaagatgtgtaacatttcatg 585
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 903  gttttttgtggttccctttggtatgtgtcatgtctagttaaagatgtgtaacatttcatg 844

                                                                        
Query: 586  acaacatccaaaaagcatataatacaaggactggagaaataatcctgcaacaaagaacta 645
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 843  acaacatccaaaaagcatataatgcaaggactggagaaataatcctgcaacaaagaacta 784

                                                                        
Query: 646  acctagtatgtataagaccaagaaatggatccctggcaccacaaaaataaaaacagcata 705
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783  acctagtatgtataagaccaagaaatggatccctggcaccacaaaaataaaaacagcata 724

                                                                        
Query: 706  attgcctggcagaggaggacacacctttaatgccaaaacttgagttccaagacggccaag 765
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723  attgcctggcagaggaggacacacctttaatgccaaaacttgagttccaagacggccaag 664

                                                  
Query: 766  tctacataaagagaccctaacaaaaaaaaaaaaaaaaa 803
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 663  tctacataaagagaccctaacaaaaaaaaaaaaaaaaa 626


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 803
Length of database: 1203
Length adjustment: 10
Effective length of query: 793
Effective length of database: 1193
Effective search space:   946049
Effective search space used:   946049
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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