BAC Information

Click to search

BAC

Clone NameMSMg01-062B19
Chromosome16 (Build37)
Map Location 66,372,502 - 66,373,289
singlet/doubletsinglet
Overlap genenone
Upstream genePou1f1, Chmp2b, EG383186, Vgll3, LOC664846, LOC100039035
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-062B19.T7 (MSMg01no062_b19.b1)MSMg01-062B19.TJ (MSMg01no062_b19.g1)
ACCAG288163AG288164
length1,1561,173
length of high quality
(start - end)		794 (87 - 880)781 (89 - 869)
definitionCHROMAT_FILE: MSMg01no062_b19.b1 PHD_FILE: MSMg01no062_b19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:21 2005CHROMAT_FILE: MSMg01no062_b19.g1 PHD_FILE: MSMg01no062_b19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:05:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGTCTTTNNNNNAATCAGTGGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCCTTCAGGTCTCCAGACCCTTAATCCTTAAGGCTTACTG
GAAATGGCAGGATCCACCGTTGAAAACACAGAGGCCTTCCAGGTTGTCTA
AAGATGAACTTCAATTCATAATTTAAAAGCATATACCTCTGAGTAGAGAT
TGAAGATGCTAATGAGACATGAGTTGCAAAATATTGGTAGAACTACATAT
AACAGAGAAAGCTTAGATGAGAAAGCCTATGCTGTACAAAGGACCCTATT
CATCCACAAATTATAACCCGGAAGCCTCATCTTATTTTTCTTGTTAAACT
GTTAAATGATTTTCCTCCTTCAACCTGCTTCATTTCTTGGGGATATGTTT
GTTGAAAAATTCTCTCACTTTGTTTTCTACTTTCCACATTTCTGTTCAGT
TCTATAGGAGTTAAACAGTAAAACAAAATGGCCACCAGACTGTAAATCCT
GGCATCTACCAAGAGGAGAGAAAGAGAGAGAGAGAGAAATAAAGAAAAAG
TCATACCTTTTGAATTATGATAACCAAAGGAGGTCTGCAATCAGCTTTAC
GGAAAAAAAAATGATCAAATTTTCTTGGAAGTAGTGAGAAAAACTAAGGT
GTCAGATGAAGCAGGATGAAGATTATATCCAGTACCCAAAAGGGAGAGTC
AAAGAAGAAAAGGAAAAAGTTCACAATTTTGGATTTAAAATTCAGAAAAA
TCATCAGACTTTAATATCTTCAAGCAATTGTATGGAAGCATATAATCCAG
GGATATATAAGGATACTGTCAGAGAGGATAGCTATTCCTCCCATCTTCTT
AGCATGTCATTGAGTGAATAGGCTTTTCTTGGAGTTTGTTTCATTGCTGG
GTGATTGATAATCCCATTTGGATTANGACTTGGAGAGTGAACATTGCCAT
ATAGTGTTTTGGACACCAAGTTTCCCACCAGGGTCAGAGGAGAACACTGA
ATATCCTCTTCTGAAACAAAAAAATGAGTTTCACCACGTTCAGGGAATCA
AAATACTTTTCCAACCCTTAATTTTTAAATTTTAAAAAGCCTTTTTTCTT
GTTTCCCCGGAAAAAAAATGGGTTGCTTTAAAACCGATCTTGTAGGAGGG
GAAAGA

NCCGTTCTTTNNNNAACGACGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAGCCGCCGAGATACTAGCT
CGGGGAAGAAGTGGCCCTAAGAAACCCAGGAATCTATCATCACCAGTCGC
TGATAGGAGACCCCCGTTTCACGGGGAGGGTTCAGAACTACGGGACTTTA
CAGCTTTACAAGGTATGTCTGGCCTTGAACTTTCTCCAGCATTAGAAGCC
TTTCTGTTCCTTTTCACAGGGCTCTTTCCTTTTCTTTTTGATTGCATACT
GTTTCCACCAATACTGTGGAATTGCTAACTGGTGTTCAGTCGAGGTCAGG
CACTGTTAGAAAAGGGATCAGATTGTGCTTAAAAGACGAGGAATGTCAGC
AAGTGGTTAAGGCAGGGCAGAAAATTCTAGATGAAATTCAAGACAGTCTA
TCAGAGGTACACCAGGGAGAGAGATTGGGAGCAAAGAGGACACATGGTGC
ATCAATTAAGCATACAGGCCTTTCCACGGACCTTGAGCCCAAGGAAAAGA
TAACGTCGGGGAAGAATACCTGGGGTGAGTTTGGAAGGAAGGAGAAGAAA
AAAGAGAAGAAGAAAGATCAATCCGCTGAGGTCCCTAGGAGAAGGAACCT
ATACCCGCCACTAGATGTGTTTAAGGACCTAGCTCTTAGTAGCTCAGAAT
CAGATGAAGGACTTAGCTCCTCTGAGGAAATGGACTTGGAGGAGGAAGCA
GCTTGTTATGAGGGAGAAAGGTACCAGCAAGATAAAATGCAAGCTAATCA
GTCCAGAAAAAGGCCAAAAGCGCCTGGCAAAAGCCAGCTTGCTGTTCGGC
CTCCAGACTGTCGGCTTCAGGGTCCTAATGCACATCTGCCTTATGTGCAG
AGGCATTATTCAGATTCCTTCATTCCAGAAGAGGAACAGAGGAAAATGCC
ACAGGCTTTTTCCGTTTTTGGAAGGAGCCAGGGAGGGGTGAGTTTCTTGC
TCCGCGTAGAAGTATTTTCCGAATTAGGGAGCTTCCCTGGAGCCGCCCCC
TAATTATTGGAGGTCCGGGGCAAATTTCCCCTGTAGACACAAGTTTGAAA
AGGCCTTGGGAACCTCCCCCTATTAACCCCCTGGGGGGATTTGGGTAAAA
CTGTATATTAATATCTTGCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no062_b19.b1 MSMg01no062_b19.b1 CHROMAT_FILE:
MSMg01no062_b19.b1 PHD_FILE: MSMg01no062_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:21 2005
         (794 letters)



>mm_chr16_66372299_66373494
          Length = 1196

 Score = 1286 bits (665), Expect = 0.0
 Identities = 760/795 (95%), Gaps = 11/795 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   aaggcttactggaaatggcaggatccaccgttgaaaacacagaggccttccaggttgtct 63
           |||||||||||||||||||||||||||| | || |||||||||||| |||||||||||||
Sbjct: 204 aaggcttactggaaatggcaggatccactggtgcaaacacagaggcattccaggttgtct 263

                                                                       
Query: 64  aaagatgaacttcaattcataatttaaaagcatatacctctgagtagagattgaagatgc 123
           |||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct: 264 aaagttgaacttcaattcatcatttaaaagcatatacctctgggtagagattgaagatgc 323

                                                                       
Query: 124 taatgagacatgagttgcaaaatatt--ggtagaactacatataacagagaaagcttaga 181
           |||||||||||||||||| |||||||  ||||||||||||| ||||||| ||||||||||
Sbjct: 324 taatgagacatgagttgcgaaatattttggtagaactacatgtaacagataaagcttaga 383

                                                                       
Query: 182 tgagaaagcctatgctgtacaaaggaccctattcatccacaaattataacccggaagcct 241
           ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct: 384 tgagaaagcctatgctgtacaaaggacccaattcatccacaaattataacctggaagcct 443

                                                                       
Query: 242 catcttatttttcttgttaaactgttaaatgattttcctccttcaacctgcttcatttct 301
           ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct: 444 catcttatttttcttgttaaattgttaaatgattttcctctttcaacctgcttcatttct 503

                                                                       
Query: 302 tggggatatgtttgttgaaaaattctctcactttgttttctactttccacatttctgttc 361
           ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 504 tggggatatgtttgttggaaaattctctcactttgttttctactatccacatttctgttc 563

                                                                       
Query: 362 agttctataggagttaaacagtaaaacaaaatggccaccagactgtaaatcctggcatct 421
           ||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 564 agttctataggagtttaacagtaaaacaaaatggtcaccaaactgtaaatcctggcatct 623

                                                                       
Query: 422 accaagaggagagaaagagagagagagagaaataaagaaaaagtcataccttttgaatta 481
           ||||||||||||||||||||||||||    ||||||||||  ||||| |||||  |||||
Sbjct: 624 accaagaggagagaaagagagagaga----aataaagaaa--gtcatgcctttcaaatta 677

                                                                       
Query: 482 tgataaccaaaggaggtctgcaatcagctttac-ggaaaaaaaaatgatcaaattttctt 540
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 678 tgataaccaaaggaggtctgcaatcagctttacaggaaaaaaaaatgatcaaattttctt 737

                                                                       
Query: 541 ggaagtagtgagaaaaactaaggtgtcagatgaagcaggatgaagattatatccagtacc 600
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ggaagcagtgagaaaaactaaggtgtcagatgaagcaggatgaagattatatccagtacc 797

                                                                       
Query: 601 caaaagggagagtcaaagaagaaaaggaaaaagttcacaattttggatttaaaattcaga 660
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 798 caaaagggagagtcaaagaagaaaaggaaaaagttcacaattttggatttaaaattca-a 856

                                                                       
Query: 661 aaa-atcatcagactttaatatcttcaagcaattgtatggaagcatataatccagggata 719
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aaatatcatcagactttaatatcttcaagcaattgtatggaagcatataatccagggata 916

                                                                       
Query: 720 tataaggatactgtcagagaggatagctattcctcccatcttcttagcatgtcattgagt 779
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 917 tataaggatactgtcagagaggacagctattcctcccatcttcttagcatgtcattgagt 976

                          
Query: 780 gaataggcttttctt 794
           |||||||||||||||
Sbjct: 977 gaataggcttttctt 991


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 794
Length of database: 1196
Length adjustment: 10
Effective length of query: 784
Effective length of database: 1186
Effective search space:   929824
Effective search space used:   929824
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


| Home | SequenceCutter | Blast | Download |