Query= MSMg01no062_d08.b1 MSMg01no062_d08.b1 CHROMAT_FILE:
MSMg01no062_d08.b1 PHD_FILE: MSMg01no062_d08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:33 2005
(739 letters)
>mm_chr16_39576336_39577474
Length = 1139
Score = 1375 bits (711), Expect = 0.0
Identities = 732/743 (98%), Gaps = 8/743 (1%)
Strand = Plus / Plus
Query: 1 gcatatagaaagcctagagggtcttgtccttaa----tcttttgcaaggcaaaaatttag 56
|||||||||||||||||||||||||| ||| |||||||||||| ||||||||||
Sbjct: 201 gcatatagaaagcctagagggtcttg----taatcactcttttgcaaggtaaaaatttag 256
Query: 57 taagagtacacacgagagccggggttttcttttacctatttttgctttactgagatgttt 116
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 taagagtacacacgagagccggggttttcttttacctatttttgctttactgagatgttt 316
Query: 117 aaaaataaaccttctgcttccagctcatgcctattgttttgccaaagtttaagggatcgg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaaaataaaccttctgcttccagctcatgcctattgttttgccaaagtttaagggatcgg 376
Query: 177 aatacatgaattataaaatttatatcttaatgttatagacgaccaactaacatcctggga 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 aatacatgaattataaaatttatatcttaatgttatagacgaccaactaacatcctggga 436
Query: 237 gtgctcggaagtattaattttataaactattgtaaatacacttggcacggcttctagact 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gtgctcggaagtattaattttataaactattgtaaatacacttggcacggcttctagact 496
Query: 297 gaaatttttttcctggatgaatttgcatatcaatggccttggagacacaaggaaacaaaa 356
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gaaatttttttcctggaagaatttgcatatcaatggccttggagacacaaggaaacaaaa 556
Query: 357 taagattcagtgttgctcaaaataaaagccacattatcatttctcgctgtgcttagtctc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 taagattcagtgttgctcaaaataaaagccacattatcatttctcgctgtgcttagtctc 616
Query: 417 tgaagcagcgctccctgttccacgtggtccaattgccattaaatgaggactgatcacctt 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tgaagcagcgctccctgttccacgtggtccaattgccattaaatgaggactgatcacctt 676
Query: 477 ataatgtggtaaattggttcatttacatggaagattagttttataattttattgaaaatc 536
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ataatgtggtaaattgattcatttacatggaagattagttttataattttattgaaaatc 736
Query: 537 ttagcttaaaatcaattgctttagtgtctggtcagcactggtgaaatatggatattgaaa 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 ttagcttaaaatcaattgctttagtgtctggtcagcactggtgaaatatggatattgaaa 796
Query: 597 aataatcatcttcagccttgctttatctcaacctgtactatcaaaaactaatatgatata 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 aataatcatcttcagccttgctttatctcaacctgtactatcaaaaactaatatgatata 856
Query: 657 aatgtcatccttacttaatgacattgtatttgtctcttcaatatttgttaactaaaattt 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 aatgtcatccttacttaatgacattgtatttgtctcttcaatatttgttaactaaaattt 916
Query: 717 cttacgttaaaattatctaacag 739
|||||||||||||||||||||||
Sbjct: 917 cttacgttaaaattatctaacag 939
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 739
Length of database: 1139
Length adjustment: 10
Effective length of query: 729
Effective length of database: 1129
Effective search space: 823041
Effective search space used: 823041
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_d08.g1 MSMg01no062_d08.g1 CHROMAT_FILE:
MSMg01no062_d08.g1 PHD_FILE: MSMg01no062_d08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:05:34 2005
(774 letters)
>mm_chr16_39720180_39721353
Length = 1174
Score = 1381 bits (714), Expect = 0.0
Identities = 762/784 (97%), Gaps = 10/784 (1%)
Strand = Plus / Minus
Query: 1 ataggctacatagcagctatctccaaccctacaaaacaccttgcacgatcaagatcctaa 60
||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||
Sbjct: 842 ataggctacatagcagctatctccaacaaaacaaaacaccttgtaagatcaagatcctaa 783
Query: 61 gatgtgaagacatgaagatggagaccttccaatgattctatcctctaccatgcttttgaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gatgtgaagacatgaagatggagaccttccaatgattctatcctctaccatgcttttgaa 723
Query: 121 cttcattgtcttaagaatggggctttgtttgaagagaaagaagtggaagataaataaata 180
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 722 cttcattgtcttaagaatggggctttgtttgaagagaaagaagtgggagataaataaata 663
Query: 181 aacatggtaggatgaaggtgagttgttcaatgaggaaaggagcagagtcacatgaaggat 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 aacatggcaggatgaaggtgagttgttcaatgaggaaaggagcagagtcacatgaaggat 603
Query: 241 atactcactcataagtgtgttcaaacactgggaaactaaagagagacagccacttatcct 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 gtactcactcataagtgtgttcaaacactgggaaactaaagagagacagccacttatcct 543
Query: 301 atgtatttatttactaaaccatcgaatgacagaatatatgcaatttctacttgatatcaa 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 atgtatttatttacaaaaccatcgaatgacagaatatatgcaatttctacttgatatcaa 483
Query: 361 tggggaaatatggggcatctgcaatcaagccctggtttctcagctaagcccttggatata 420
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 482 tggggaaatatggggcatctgcaagcaagccctggtttctcagataagcccttggatata 423
Query: 421 gggacaatatggcaaggttaaaacatcacagagcctgttgatactgaagcagactcaaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 gggacaatatggcaaggttaaaacatcacagagcctgttgatactgaagcagactcaaac 363
Query: 481 attaagaagacttttaagcaaagggaggaaaatagtttgttagacatagaaagcaagagg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 attaagaagacttttaagcaaagggaggaaaatagtttgttagacatagaaagcaagagg 303
Query: 541 taaaccaaaggtaaacataaaccagacattgtccttgcaggagatgtgacaagcaaataa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 taaaccaaaggtaaacataaaccagacattgtccttgcaggagatgtgacaagcaaataa 243
Query: 601 agtattaaagtgaagtgggtgactgacctaacaactctttaagaaaatatcatacatgta 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agtattaaagtgaagtgggtgactgacctaacaactctttaagaaaatatcatacatgta 183
Query: 661 tacactatatcttggacatatccatcccccactccaggggcctccagtttcat------- 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tacactatatcttggacatatccatcccccactccaggggcctccagtttcatacacaca 123
Query: 714 ---acacacacacacacacacacacacacacacacactttctttcccaacttcattttgt 770
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 122 cacacacacacacacacacacacacacacacacacactttctttcccaacttcattctgt 63
Query: 771 gtgt 774
||||
Sbjct: 62 gtgt 59
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 48
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 774
Length of database: 1174
Length adjustment: 10
Effective length of query: 764
Effective length of database: 1164
Effective search space: 889296
Effective search space used: 889296
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
