Query= MSMg01no062_j13.b1 MSMg01no062_j13.b1 CHROMAT_FILE:
MSMg01no062_j13.b1 PHD_FILE: MSMg01no062_j13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:21 2005
(717 letters)
>mm_chr16_74758494_74759610
Length = 1117
Score = 1282 bits (663), Expect = 0.0
Identities = 702/715 (98%)
Strand = Plus / Minus
Query: 1 acaaaacaaaaataacactcttagtccacctgttggggcaggaggccccgaaatacagat 60
||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||
Sbjct: 743 acaaaacaaaaataacactcttagtccacttggtggggcaggaggcattgaaatacagat 684
Query: 61 ataggctttgttactttaagatacaatataattatgtggtgaaactcattttctcttttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ataggctttgttactttaagatacaatataattatgtggtgaaactcattttctcttttt 624
Query: 121 gttttattccaatttatgtttagcaaaattaccaactccacataagaaagtcctggtaat 180
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 623 gttttattccaatttatgtttagcgaaattaccaactccacataagaaagtcctggtaat 564
Query: 181 tatttgtttagaattgctgggctgtgtacgaatgtggggacagttatctttattctttct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tatttgtttagaattgctgggctgtgtacgaatgtggggacagttatctttattctttct 504
Query: 241 tagacttattatagattgaaattaggctgagctttctttgctgttatttttccagagcct 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 503 tagacttattatagattgaaattaggctgagctttctttactgttatttttccagagcct 444
Query: 301 ttgggattagagatgatggattttggtggtgttctgagtgcagttaagcccttgtcaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ttgggattagagatgatggattttggtggtgttctgagtgcagttaagcccttgtcaaca 384
Query: 361 taagtataaagttattgctctgtgtagttggtatattttcaaaggtaattaacgctaaac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taagtataaagttattgctctgtgtagttggtatattttcaaaggtaattaacgctaaac 324
Query: 421 attggaaggagcaggatgattagaagccctcaatatataggaggctgctctgtgctcaca 480
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 323 attggaaggagcaggatgattagaagccctcaatatacaggaggctgctctgtgctcaca 264
Query: 481 cacataaaatcttacacttcttacaattacatttttatttagagcagagagtatatagac 540
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 263 cacataaaatcttacacgtcttacaactacatttttatttagagcagagagtatatagac 204
Query: 541 aactggtgctgaatctccctaattctgggacccttcaatacagttgctcatgttgggctg 600
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 203 aactggtgctgaatctccctaattctaggacccttcaatacagttgctcatgttgggctg 144
Query: 601 acctgcatccaaaaaattatttttgttgctatttcataactgtaaccttgcaactgttgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 acctgcatccaaaaaattatttttgttgctatttcataactgtaaccttgcaactgttgt 84
Query: 661 gaatcataatatacacatctgttttataatggtttcatgtgactccagtgaaagg 715
|||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 aaatcgtaatatacacatctgttttataatggtttcatgtgactccagtgaaagg 29
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space: 782649
Effective search space used: 782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no062_j13.g1 MSMg01no062_j13.g1 CHROMAT_FILE:
MSMg01no062_j13.g1 PHD_FILE: MSMg01no062_j13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:06:21 2005
(605 letters)
>mm_chr16_74601464_74602468
Length = 1005
Score = 957 bits (495), Expect = 0.0
Identities = 561/605 (92%), Gaps = 35/605 (5%)
Strand = Plus / Plus
Query: 1 gtaaggatatgcttcaggtaatgttcaaaatagttaataataaaatgcttatcctttctc 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtaaggatatgctttaggtaatgttcaaaatagttaataataaaatgcttatcctttctc 260
Query: 61 ttttttctttttctctcaaaagaactagtgtctctctctctcaaaagacttagctgtttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttttctttttctctcaaaagaactagtgtctctctctctcaaaagacttagctgtttt 320
Query: 121 attttaatttttcttcttagtttgggactggagaaaagaaacaaaaagattaagaaataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 attttaatttttcttcttagtttgggactggagaaaagaaacaaaaagattaagaaataa 380
Query: 181 gtgagtatatatacaaaaaattctgaataaatttgtttaactactatagcataggaagta 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgaatatatatacaaaaaattctgaataaatttgtttaactactatagcataggaagta 440
Query: 241 taaacaactctacttctataatgcttatatttacatatatatatatatatatatatatat 300
|||||||||||||||||||||||| |||||| |||||||||||
Sbjct: 441 taaacaactctacttctataatgcaaatatttgcatatatatat---------------- 484
Query: 301 atatatatatatatatatgaagcaaagatttatataggtggttggtttatcaacaattgt 360
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ------------------gaagcaaagatttatataggtggttggtttatcaacaattgt 526
Query: 361 ctacaaatggtaagaacgttatatagaacaatttaattatgagagacaagaagtttaaat 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 ctacaaatggtaagaacattatatagaacaatttaattatgagagacaagaagtttaaat 586
Query: 421 gggaaatgagtactttaatatgcttttagttacttgaattaagtactaagtatgattttt 480
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 gg-aaataagtactttaatatgcttttagttacttgaattaagtactaagtatgattttt 645
Query: 481 attgatacaccttttgacctaaaacattaattaaagcatattaattgtactagttgtctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 attgatacaccttttgacctaaaacattaattaaagcatattaattgtactagttgtctt 705
Query: 541 tccttggtagtcaatctctactttgaagcaacatttgttttattactttaagctctactg 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 706 tccttggtagtcaatctctactttgaagcaacatttgttttattattttaagctctactg 765
Query: 601 agaga 605
|||||
Sbjct: 766 agaga 770
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space: 592025
Effective search space used: 592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
